Wall clock time and date at job start Tue Mar 31 2020 06:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46764 * 2 1 4 4 C 1.52999 * 109.47406 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47532 * 180.02562 * 4 3 2 6 6 C 1.37095 * 119.99566 * 264.33422 * 5 4 3 7 7 H 1.07997 * 120.00091 * 143.84452 * 6 5 4 8 8 C 1.38949 * 119.99854 * 323.83004 * 6 5 4 9 9 N 1.31404 * 120.00377 * 339.53501 * 8 6 5 10 10 Si 1.86811 * 119.99665 * 159.53040 * 8 6 5 11 11 H 1.48501 * 109.46629 * 60.00445 * 10 8 6 12 12 H 1.48501 * 109.46837 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47151 * 300.00333 * 10 8 6 14 14 C 1.34770 * 120.00186 * 84.32781 * 5 4 3 15 15 O 1.21303 * 119.99898 * 0.02562 * 14 5 4 16 16 C 1.50698 * 120.00315 * 180.02562 * 14 5 4 17 17 H 1.08993 * 110.64437 * 61.69311 * 16 14 5 18 18 C 1.54597 * 110.71963 * 298.54526 * 16 14 5 19 19 C 1.53997 * 105.14039 * 219.68094 * 18 16 14 20 20 N 1.47903 * 107.05525 * 358.77884 * 19 18 16 21 21 C 1.46903 * 110.99752 * 145.84492 * 20 19 18 22 22 C 1.52999 * 109.47158 * 65.06256 * 21 20 19 23 23 C 1.52999 * 109.47012 * 185.06654 * 21 20 19 24 24 C 1.48532 * 105.82228 * 25.32787 * 20 19 18 25 25 H 1.08996 * 109.47620 * 60.00130 * 1 2 3 26 26 H 1.09008 * 109.46606 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47262 * 299.99240 * 1 2 3 28 28 H 1.09001 * 109.47262 * 240.00760 * 2 1 3 29 29 H 1.08996 * 109.47620 * 119.99870 * 2 1 3 30 30 H 1.09003 * 109.46808 * 59.99858 * 3 2 1 31 31 H 1.08995 * 109.47676 * 300.00147 * 3 2 1 32 32 H 1.08999 * 109.46908 * 59.99779 * 4 3 2 33 33 H 1.09007 * 109.46994 * 300.00375 * 4 3 2 34 34 H 0.97000 * 120.00191 * 179.97438 * 9 8 6 35 35 H 1.09001 * 110.31505 * 338.60031 * 18 16 14 36 36 H 1.09007 * 110.30752 * 100.67112 * 18 16 14 37 37 H 1.08996 * 109.91495 * 118.13330 * 19 18 16 38 38 H 1.08997 * 109.91607 * 239.22566 * 19 18 16 39 39 H 1.09006 * 109.46630 * 305.06662 * 21 20 19 40 40 H 1.09003 * 109.46645 * 185.34005 * 22 21 20 41 41 H 1.08997 * 109.47523 * 305.34374 * 22 21 20 42 42 H 1.09004 * 109.46832 * 65.35105 * 22 21 20 43 43 H 1.09008 * 109.46860 * 59.99779 * 23 21 20 44 44 H 1.08993 * 109.46917 * 179.97438 * 23 21 20 45 45 H 1.08995 * 109.47108 * 299.99846 * 23 21 20 46 46 H 1.08990 * 110.66635 * 202.35529 * 24 20 19 47 47 H 1.09000 * 110.66825 * 79.22508 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 7 4.0582 2.8240 0.0000 6 6 4.3966 3.4318 -1.1813 7 1 4.1952 4.4831 -1.3248 8 6 4.9991 2.6953 -2.1939 9 7 5.6052 1.5640 -1.9121 10 14 4.9472 3.3135 -3.9560 11 1 5.6095 4.6404 -4.0347 12 1 5.6563 2.3527 -4.8387 13 1 3.5343 3.4387 -4.3953 14 6 4.1745 3.4971 1.1617 15 8 3.8753 2.9591 2.2070 16 6 4.6762 4.9181 1.1623 17 1 4.0063 5.5624 0.5932 18 6 6.1142 4.9907 0.5994 19 6 6.8415 6.0192 1.4853 20 7 5.8563 6.5177 2.4694 21 6 6.5000 6.8090 3.7573 22 6 7.4889 7.9635 3.5837 23 6 5.4344 7.2001 4.7832 24 6 4.8447 5.4395 2.6116 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6765 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9329 0.9290 -0.8908 33 1 3.9336 0.9287 0.8891 34 1 6.0254 1.0497 -2.6191 35 1 6.5992 4.0173 0.6737 36 1 6.0981 5.3265 -0.4375 37 1 7.6737 5.5414 2.0022 38 1 7.2086 6.8428 0.8730 39 1 7.0324 5.9239 4.1058 40 1 8.0348 8.1173 4.5146 41 1 8.1915 7.7233 2.7858 42 1 6.9447 8.8725 3.3273 43 1 4.7299 6.3775 4.9068 44 1 5.9119 7.4157 5.7389 45 1 4.9020 8.0851 4.4347 46 1 3.9041 5.8416 2.9876 47 1 5.2145 4.6487 3.2643 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181977193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:25 Heat of formation + Delta-G solvation = -50.090643 kcal Electronic energy + Delta-G solvation = -23666.198387 eV Core-core repulsion = 20462.192179 eV Total energy + Delta-G solvation = -3204.006208 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.45060 -37.89315 -35.32897 -34.12290 -33.74964 -31.48067 -29.50080 -28.84021 -27.93755 -26.62606 -24.90447 -23.37478 -21.68479 -20.83219 -20.19918 -19.71174 -18.87041 -16.87016 -16.10913 -15.83360 -14.91133 -14.72339 -14.57654 -14.29213 -13.91084 -13.75185 -13.52478 -12.97220 -12.72832 -12.66530 -12.22632 -12.17879 -12.07221 -11.94288 -11.84843 -11.43187 -11.24617 -11.21185 -11.01748 -10.84530 -10.70152 -10.61688 -10.56460 -10.50992 -10.36265 -10.31130 -10.13497 -9.98315 -9.70322 -9.03959 -8.34604 -8.06028 -7.49574 -6.37839 -4.05561 3.11218 3.19986 3.22199 3.90637 4.09659 4.23211 4.78176 4.97673 5.07509 5.10272 5.22805 5.47881 5.49472 5.50008 5.60889 5.64195 5.67927 5.70569 5.86825 5.91396 5.95295 5.98899 6.07527 6.10996 6.19913 6.25424 6.29804 6.32209 6.33289 6.41330 6.46771 6.47956 6.54929 6.63541 6.75340 6.85905 6.86419 6.91180 7.14289 7.30887 7.37316 7.42925 7.50109 7.95151 8.38194 9.07741 9.53604 9.96999 10.63841 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014994 B = 0.005481 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.924661 B = 5107.629754 C = 6590.385925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.117 3.883 5 N -0.435 5.435 6 C -0.334 4.334 7 H 0.089 0.911 8 C 0.045 3.955 9 N -0.859 5.859 10 Si 0.909 3.091 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.476 3.524 15 O -0.608 6.608 16 C -0.088 4.088 17 H 0.090 0.910 18 C -0.100 4.100 19 C 0.035 3.965 20 N -0.517 5.517 21 C 0.067 3.933 22 C -0.141 4.141 23 C -0.145 4.145 24 C 0.059 3.941 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.049 0.951 34 H 0.269 0.731 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.039 0.961 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.076 0.924 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.253 5.772 4.317 7.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.167 4.167 4 C -0.007 4.007 5 N -0.152 5.152 6 C -0.462 4.462 7 H 0.106 0.894 8 C -0.161 4.161 9 N -0.496 5.496 10 Si 0.736 3.264 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.264 3.736 15 O -0.495 6.495 16 C -0.110 4.110 17 H 0.108 0.892 18 C -0.138 4.138 19 C -0.092 4.092 20 N -0.242 5.242 21 C -0.042 4.042 22 C -0.199 4.199 23 C -0.203 4.203 24 C -0.069 4.069 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.056 0.944 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.506 5.824 4.533 7.397 hybrid contribution 0.444 -0.512 -0.797 1.046 sum -0.062 5.312 3.735 6.494 Atomic orbital electron populations 1.21757 0.96671 1.00642 1.01471 1.21424 0.94946 0.97801 1.01535 1.21911 0.98026 0.95443 1.01304 1.21382 0.90958 0.85039 1.03279 1.43425 1.54981 1.11843 1.04980 1.19342 1.39410 0.96197 0.91215 0.89351 1.25298 0.94270 0.96355 1.00166 1.69923 1.30856 1.15298 1.33491 0.86283 0.78670 0.78810 0.82668 1.19670 1.20975 1.19854 1.20259 0.81242 0.88428 0.83674 1.90514 1.56075 1.70884 1.32002 1.21786 0.98034 0.95231 0.95908 0.89170 1.22177 0.93570 0.98618 0.99443 1.22921 0.94271 0.97495 0.94555 1.64814 1.12476 1.39275 1.07622 1.21777 0.94869 0.97364 0.90197 1.21812 0.98449 0.98476 1.01119 1.21860 0.98745 1.02161 0.97510 1.22968 0.95606 0.91833 0.96480 0.93058 0.93453 0.93083 0.92307 0.92455 0.92859 0.92427 0.87797 0.93267 0.92046 0.91066 0.90102 0.94426 0.90873 0.94353 0.92792 0.92657 0.92045 0.92350 0.92690 0.91952 0.90542 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -2.03 5.93 -26.73 -0.16 -2.18 16 3 C -0.13 -2.63 5.50 -26.73 -0.15 -2.77 16 4 C 0.12 2.78 4.88 -4.04 -0.02 2.76 16 5 N -0.44 -10.73 2.54 -114.81 -0.29 -11.02 16 6 C -0.33 -8.12 7.25 -14.93 -0.11 -8.23 16 7 H 0.09 2.08 6.79 -52.49 -0.36 1.73 16 8 C 0.05 1.09 4.94 -17.47 -0.09 1.01 16 9 N -0.86 -22.03 11.39 55.50 0.63 -21.40 16 10 Si 0.91 18.99 29.60 -169.99 -5.03 13.96 16 11 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 14 C 0.48 11.49 6.89 -10.99 -0.08 11.42 16 15 O -0.61 -16.03 15.46 5.54 0.09 -15.94 16 16 C -0.09 -1.79 2.58 -89.91 -0.23 -2.02 16 17 H 0.09 1.80 7.77 -51.93 -0.40 1.40 16 18 C -0.10 -1.92 5.19 -25.37 -0.13 -2.05 16 19 C 0.04 0.58 5.49 -2.75 -0.02 0.56 16 20 N -0.52 -8.34 5.11 -222.50 -1.14 -9.48 16 21 C 0.07 0.92 2.38 -67.71 -0.16 0.76 16 22 C -0.14 -1.63 9.26 37.16 0.34 -1.29 16 23 C -0.15 -1.79 8.99 37.16 0.33 -1.46 16 24 C 0.06 1.08 4.34 -1.90 -0.01 1.07 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.10 2.60 5.46 -51.93 -0.28 2.32 16 33 H 0.05 1.23 7.60 -51.92 -0.39 0.84 16 34 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 35 H 0.07 1.55 7.84 -51.93 -0.41 1.15 16 36 H 0.08 1.56 7.46 -51.92 -0.39 1.17 16 37 H 0.04 0.60 7.65 -51.93 -0.40 0.20 16 38 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 39 H 0.04 0.56 7.96 -51.93 -0.41 0.15 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.65 7.15 -51.93 -0.37 0.27 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.78 6.88 -51.92 -0.36 0.42 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.08 1.36 7.65 -51.93 -0.40 0.96 16 47 H 0.05 1.09 7.40 -51.93 -0.38 0.70 16 LS Contribution 362.53 15.07 5.46 5.46 Total: -1.00 -27.10 362.53 -9.14 -36.24 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -8.76 Total: 6.35 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.10 Total: -4.17 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: -0.80 Total: -41.89 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.09 Total: -15.94 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.10 -9.14 -36.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181977193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.854 kcal (2) G-P(sol) polarization free energy of solvation -27.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds