Wall clock time and date at job start Tue Mar 31 2020 06:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47121 * 2 1 4 4 C 1.53000 * 109.46805 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46482 * 180.02562 * 4 3 2 6 6 C 1.37098 * 119.99729 * 263.37342 * 5 4 3 7 7 H 1.07998 * 119.99961 * 142.76912 * 6 5 4 8 8 C 1.38954 * 120.00207 * 322.75719 * 6 5 4 9 9 N 1.31412 * 119.99751 * 348.61156 * 8 6 5 10 10 Si 1.86789 * 120.00022 * 168.61097 * 8 6 5 11 11 H 1.48504 * 109.47674 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47286 * 120.00337 * 10 8 6 13 13 H 1.48497 * 109.47309 * 240.00165 * 10 8 6 14 14 C 1.34773 * 120.00073 * 83.37644 * 5 4 3 15 15 O 1.21286 * 120.00194 * 5.26136 * 14 5 4 16 16 C 1.50702 * 119.99871 * 185.25420 * 14 5 4 17 17 C 1.52993 * 109.57733 * 307.02959 * 16 14 5 18 18 C 1.53125 * 109.52336 * 186.86527 * 16 14 5 19 19 C 1.53032 * 109.27925 * 297.75603 * 18 16 14 20 20 N 1.46843 * 109.52483 * 300.81633 * 19 18 16 21 21 C 1.46905 * 111.00373 * 185.84055 * 20 19 18 22 22 C 1.46850 * 111.19612 * 61.74543 * 20 19 18 23 23 C 1.53036 * 109.52479 * 298.25439 * 22 20 19 24 24 H 1.09001 * 109.47253 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47369 * 299.99628 * 1 2 3 26 26 H 1.09006 * 109.47492 * 59.99670 * 1 2 3 27 27 H 1.08998 * 109.46988 * 240.00109 * 2 1 3 28 28 H 1.09000 * 109.46878 * 120.00026 * 2 1 3 29 29 H 1.09003 * 109.46695 * 59.99960 * 3 2 1 30 30 H 1.08998 * 109.46994 * 300.00251 * 3 2 1 31 31 H 1.08998 * 109.47048 * 60.00266 * 4 3 2 32 32 H 1.09000 * 109.47134 * 299.99989 * 4 3 2 33 33 H 0.96998 * 119.99847 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.47259 * 313.96139 * 17 16 14 35 35 H 1.09003 * 109.47532 * 73.96439 * 17 16 14 36 36 H 1.09000 * 109.47103 * 193.95945 * 17 16 14 37 37 H 1.09000 * 109.50312 * 177.80934 * 18 16 14 38 38 H 1.09001 * 109.52793 * 57.71785 * 18 16 14 39 39 H 1.09005 * 109.46307 * 180.80511 * 19 18 16 40 40 H 1.08994 * 109.45780 * 60.83000 * 19 18 16 41 41 H 1.08997 * 109.46982 * 60.00140 * 21 20 19 42 42 H 1.09001 * 109.47273 * 180.02562 * 21 20 19 43 43 H 1.08998 * 109.47087 * 300.00253 * 21 20 19 44 44 H 1.08995 * 109.46698 * 58.27495 * 22 20 19 45 45 H 1.09005 * 109.46194 * 178.24472 * 22 20 19 46 46 H 1.08999 * 109.50798 * 299.24436 * 23 22 20 47 47 H 1.08998 * 109.53894 * 179.14002 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0582 2.8237 0.0013 6 6 4.4164 3.4247 -1.1778 7 1 4.2017 4.4710 -1.3376 8 6 5.0557 2.6876 -2.1672 9 7 5.5172 1.4871 -1.8974 10 14 5.2590 3.4032 -3.8806 11 1 4.6577 4.7603 -3.9249 12 1 6.7039 3.4915 -4.2119 13 1 4.5777 2.5269 -4.8671 14 6 4.1554 3.5036 1.1609 15 8 3.9304 2.9436 2.2129 16 6 4.5439 4.9597 1.1504 17 6 5.8422 5.1382 0.3610 18 6 4.7481 5.4452 2.5882 19 6 3.4299 5.3209 3.3555 20 7 2.3972 6.1255 2.6904 21 6 1.1554 6.1414 3.4752 22 6 2.1500 5.6476 1.3240 23 6 3.4299 5.7816 0.4959 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9336 0.9285 -0.8891 32 1 3.9329 0.9287 0.8909 33 1 5.9631 0.9725 -2.5881 34 1 6.5614 4.3789 0.6681 35 1 5.6370 5.0344 -0.7045 36 1 6.2534 6.1284 0.5570 37 1 5.0668 6.4875 2.5785 38 1 5.5107 4.8361 3.0736 39 1 3.5684 5.6793 4.3756 40 1 3.1191 4.2765 3.3765 41 1 1.3524 6.5691 4.4582 42 1 0.4075 6.7438 2.9597 43 1 0.7850 5.1227 3.5898 44 1 1.8451 4.6016 1.3546 45 1 1.3588 6.2432 0.8685 46 1 3.7279 6.8293 0.4533 47 1 3.2510 5.4128 -0.5141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181984579.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:04 Heat of formation + Delta-G solvation = -37.606088 kcal Electronic energy + Delta-G solvation = -24913.429640 eV Core-core repulsion = 21709.964803 eV Total energy + Delta-G solvation = -3203.464837 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.97277 -37.30826 -35.26548 -34.37793 -33.53217 -31.48906 -30.23332 -28.82079 -27.80432 -25.17555 -24.42508 -23.37006 -22.62862 -21.32466 -20.57772 -19.82903 -18.62060 -16.79874 -15.58227 -15.16287 -14.76404 -14.63105 -14.56235 -14.26555 -13.93776 -13.88271 -13.29255 -13.20082 -12.87260 -12.32421 -12.11247 -11.97893 -11.93032 -11.82952 -11.75677 -11.50137 -11.21451 -11.13627 -11.12757 -10.76978 -10.72876 -10.60723 -10.54323 -10.47137 -10.28484 -10.08628 -9.73842 -9.67456 -9.38681 -8.92281 -8.29975 -7.70142 -7.42177 -6.30534 -4.06134 3.08411 3.19487 3.21049 3.93197 4.09674 4.39834 4.79197 4.99571 5.32849 5.37753 5.46536 5.48782 5.55903 5.61036 5.67155 5.78288 5.87951 5.98878 6.03653 6.04833 6.09039 6.20017 6.24219 6.25393 6.34587 6.40486 6.41736 6.44819 6.49737 6.58639 6.61176 6.65058 6.72391 6.76859 6.86103 6.91556 6.97546 7.19761 7.23877 7.40166 7.50939 7.55152 7.63443 8.01684 8.41305 9.08015 9.56645 9.98874 10.67327 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012766 B = 0.008153 C = 0.005911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.871080 B = 3433.696183 C = 4735.498151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.126 4.126 4 C 0.109 3.891 5 N -0.438 5.438 6 C -0.329 4.329 7 H 0.102 0.898 8 C 0.037 3.963 9 N -0.867 5.867 10 Si 0.910 3.090 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.280 1.280 14 C 0.485 3.515 15 O -0.602 6.602 16 C -0.062 4.062 17 C -0.139 4.139 18 C -0.084 4.084 19 C 0.041 3.959 20 N -0.544 5.544 21 C 0.028 3.972 22 C 0.057 3.943 23 C -0.107 4.107 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.118 0.882 32 H 0.046 0.954 33 H 0.268 0.732 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.037 0.963 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.021 0.979 44 H 0.034 0.966 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.404 4.682 2.454 7.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.164 4.164 4 C -0.015 4.015 5 N -0.155 5.155 6 C -0.457 4.457 7 H 0.119 0.881 8 C -0.167 4.167 9 N -0.505 5.505 10 Si 0.737 3.263 11 H -0.191 1.191 12 H -0.206 1.206 13 H -0.206 1.206 14 C 0.274 3.726 15 O -0.489 6.489 16 C -0.065 4.065 17 C -0.197 4.197 18 C -0.123 4.123 19 C -0.086 4.086 20 N -0.269 5.269 21 C -0.121 4.121 22 C -0.070 4.070 23 C -0.145 4.145 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.135 0.865 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.053 0.947 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.231 4.703 2.802 7.572 hybrid contribution -0.153 -0.570 -0.853 1.037 sum -5.384 4.132 1.949 7.061 Atomic orbital electron populations 1.21757 0.96762 1.00630 1.01356 1.21418 0.94814 0.97863 1.01578 1.21903 0.98417 0.95307 1.00802 1.21562 0.90493 0.85298 1.04099 1.43407 1.55225 1.11746 1.05124 1.19737 1.36684 0.96764 0.92465 0.88130 1.25379 0.95217 0.96100 1.00004 1.69764 1.35617 1.11328 1.33765 0.86117 0.78213 0.79352 0.82607 1.19101 1.20648 1.20621 1.20302 0.80034 0.88608 0.83698 1.90415 1.56391 1.70787 1.31296 1.20476 0.96804 0.93457 0.95785 1.22034 0.95094 0.99246 1.03277 1.21363 0.96717 0.99908 0.94273 1.22398 0.91905 0.98213 0.96083 1.62026 1.08180 1.54122 1.02568 1.22278 0.92099 0.99601 0.98116 1.22057 0.97867 0.98216 0.88903 1.21748 0.93514 0.99718 0.99495 0.93446 0.93238 0.93076 0.92201 0.92529 0.93497 0.92576 0.86465 0.93538 0.92182 0.93165 0.88812 0.94400 0.92103 0.91817 0.92492 0.90686 0.91965 0.92068 0.96045 0.94726 0.91690 0.91504 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -2.03 5.93 -26.73 -0.16 -2.19 16 3 C -0.13 -2.55 5.49 -26.73 -0.15 -2.70 16 4 C 0.11 2.57 4.89 -4.04 -0.02 2.55 16 5 N -0.44 -10.54 2.56 -114.81 -0.29 -10.84 16 6 C -0.33 -7.76 6.20 -14.93 -0.09 -7.85 16 7 H 0.10 2.25 3.71 -52.49 -0.19 2.06 16 8 C 0.04 0.90 5.15 -17.47 -0.09 0.81 16 9 N -0.87 -22.12 10.93 55.50 0.61 -21.52 16 10 Si 0.91 18.74 29.57 -169.99 -5.03 13.71 16 11 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 12 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 13 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 14 C 0.48 11.37 5.07 -10.99 -0.06 11.31 16 15 O -0.60 -15.41 13.25 5.55 0.07 -15.33 16 16 C -0.06 -1.23 0.50 -155.53 -0.08 -1.31 16 17 C -0.14 -2.70 7.77 37.15 0.29 -2.41 16 18 C -0.08 -1.56 4.51 -26.65 -0.12 -1.68 16 19 C 0.04 0.75 5.19 -3.84 -0.02 0.73 16 20 N -0.54 -9.16 4.91 -242.96 -1.19 -10.36 16 21 C 0.03 0.39 9.59 60.07 0.58 0.97 16 22 C 0.06 1.01 5.26 -3.83 -0.02 0.99 16 23 C -0.11 -1.93 4.67 -26.65 -0.12 -2.06 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.12 2.95 5.19 -51.93 -0.27 2.68 16 32 H 0.05 1.17 7.56 -51.93 -0.39 0.78 16 33 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 34 H 0.05 1.05 8.06 -51.93 -0.42 0.63 16 35 H 0.09 1.90 4.87 -51.93 -0.25 1.65 16 36 H 0.04 0.63 8.05 -51.93 -0.42 0.21 16 37 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 38 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 39 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 40 H 0.08 1.60 5.47 -51.93 -0.28 1.32 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.03 0.70 7.31 -51.93 -0.38 0.32 16 45 H 0.06 1.02 8.09 -51.93 -0.42 0.60 16 46 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.09 1.64 5.31 -51.93 -0.28 1.36 16 LS Contribution 348.46 15.07 5.25 5.25 Total: -1.00 -26.71 348.46 -8.63 -35.34 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -8.35 Total: 8.33 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 0.31 Total: -4.59 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: -0.88 Total: -42.71 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.07 Total: -15.33 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -26.71 -8.63 -35.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181984579.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.268 kcal (2) G-P(sol) polarization free energy of solvation -26.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds