Wall clock time and date at job start Tue Mar 31 2020 06:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47213 * 2 1 4 4 C 1.53008 * 109.47346 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47070 * 179.97438 * 4 3 2 6 6 C 1.37090 * 120.00620 * 264.04232 * 5 4 3 7 7 H 1.07993 * 120.00193 * 145.54093 * 6 5 4 8 8 C 1.38954 * 119.99679 * 325.54596 * 6 5 4 9 9 N 1.31414 * 119.99535 * 158.10245 * 8 6 5 10 10 Si 1.86796 * 120.00239 * 338.10791 * 8 6 5 11 11 H 1.48501 * 109.47503 * 95.48102 * 10 8 6 12 12 H 1.48504 * 109.47219 * 215.48261 * 10 8 6 13 13 H 1.48500 * 109.46918 * 335.48054 * 10 8 6 14 14 C 1.34782 * 119.99299 * 84.04486 * 5 4 3 15 15 O 1.21291 * 120.00465 * 4.02589 * 14 5 4 16 16 C 1.50702 * 119.99455 * 184.01832 * 14 5 4 17 17 H 1.09002 * 109.45872 * 329.53652 * 16 14 5 18 18 C 1.53041 * 109.45685 * 89.50841 * 16 14 5 19 19 C 1.53120 * 109.27792 * 179.19035 * 18 16 14 20 20 C 1.53121 * 109.16396 * 302.35427 * 19 18 16 21 21 C 1.53035 * 109.28380 * 57.64686 * 20 19 18 22 22 N 1.46848 * 109.52324 * 300.82587 * 21 20 19 23 23 C 1.46899 * 111.00166 * 185.83481 * 22 21 20 24 24 C 1.53000 * 109.46859 * 51.35879 * 23 22 21 25 25 H 1.09001 * 109.47173 * 300.00074 * 1 2 3 26 26 H 1.09000 * 109.46942 * 60.00036 * 1 2 3 27 27 H 1.08998 * 109.46965 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47173 * 239.99926 * 2 1 3 29 29 H 1.09005 * 109.47581 * 119.99700 * 2 1 3 30 30 H 1.09004 * 109.47606 * 59.99996 * 3 2 1 31 31 H 1.09000 * 109.47137 * 299.99844 * 3 2 1 32 32 H 1.09001 * 109.47000 * 59.99951 * 4 3 2 33 33 H 1.09000 * 109.46982 * 300.00070 * 4 3 2 34 34 H 0.97004 * 119.99934 * 179.97438 * 9 8 6 35 35 H 1.08991 * 109.50794 * 299.13468 * 18 16 14 36 36 H 1.09002 * 109.50106 * 59.21931 * 18 16 14 37 37 H 1.09008 * 109.52010 * 62.25417 * 19 18 16 38 38 H 1.08999 * 109.52629 * 182.37748 * 19 18 16 39 39 H 1.08995 * 109.50377 * 177.59863 * 20 19 18 40 40 H 1.09007 * 109.49674 * 297.66758 * 20 19 18 41 41 H 1.08991 * 109.46206 * 180.81051 * 21 20 19 42 42 H 1.08999 * 109.45549 * 60.83994 * 21 20 19 43 43 H 1.08999 * 109.47011 * 291.36510 * 23 22 21 44 44 H 1.08993 * 109.47199 * 171.36077 * 23 22 21 45 45 H 1.08994 * 109.47205 * 179.97438 * 24 23 22 46 46 H 1.09009 * 109.46998 * 60.00497 * 24 23 22 47 47 H 1.08993 * 109.47377 * 300.00089 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.4035 3.4283 -1.1809 7 1 4.2280 4.4850 -1.3181 8 6 4.9792 2.6814 -2.2015 9 7 4.9201 3.1095 -3.4426 10 14 5.8368 1.0690 -1.8094 11 1 4.8908 -0.0574 -2.0134 12 1 7.0081 0.9003 -2.7066 13 1 6.2935 1.0821 -0.3964 14 6 4.1682 3.5000 1.1607 15 8 3.9329 2.9428 2.2120 16 6 4.5837 4.9486 1.1522 17 1 5.2411 5.1329 0.3024 18 6 3.3411 5.8346 1.0370 19 6 3.7662 7.3056 1.0491 20 6 4.5473 7.5926 2.3345 21 6 5.7548 6.6556 2.4120 22 7 5.2954 5.2609 2.3981 23 6 6.4162 4.3353 2.6103 24 6 7.1982 4.7583 3.8554 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9288 0.8909 34 1 5.3223 2.5883 -4.1550 35 1 2.8216 5.6136 0.1047 36 1 2.6765 5.6405 1.8789 37 1 4.3992 7.5089 0.1852 38 1 2.8814 7.9409 1.0098 39 1 4.8893 8.6275 2.3291 40 1 3.9017 7.4273 3.1971 41 1 6.3049 6.8476 3.3331 42 1 6.4066 6.8319 1.5564 43 1 7.0752 4.3578 1.7423 44 1 6.0317 3.3249 2.7485 45 1 8.0296 4.0713 4.0131 46 1 6.5392 4.7359 4.7234 47 1 7.5827 5.7688 3.7171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181993196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:17 Heat of formation + Delta-G solvation = -39.132988 kcal Electronic energy + Delta-G solvation = -24341.022751 eV Core-core repulsion = 21137.491702 eV Total energy + Delta-G solvation = -3203.531049 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.70384 -37.73379 -35.40393 -34.14150 -33.81252 -31.88718 -30.90634 -29.24664 -28.50903 -25.03849 -24.48991 -23.82505 -22.45271 -20.89302 -20.70805 -19.54374 -18.80134 -17.11744 -16.33331 -15.46601 -15.23165 -14.84871 -14.46825 -14.41676 -14.08109 -13.93603 -13.45185 -13.16143 -13.04435 -12.92638 -12.86105 -12.44694 -12.32341 -12.02964 -11.79129 -11.42320 -11.37605 -11.28870 -11.20388 -10.83039 -10.74141 -10.66934 -10.59837 -10.44566 -10.34325 -10.17867 -9.96144 -9.87116 -9.73076 -9.16560 -8.41343 -7.90392 -7.61474 -6.51767 -4.06942 3.01269 3.18643 3.26270 3.69451 4.06021 4.13459 4.57242 4.92086 5.15318 5.24749 5.27845 5.36595 5.39276 5.52618 5.53183 5.59076 5.71874 5.77896 5.80433 5.81993 5.86956 6.01282 6.06611 6.11922 6.15889 6.18531 6.21813 6.23900 6.26393 6.26818 6.33569 6.38141 6.43846 6.49039 6.50968 6.54191 6.63139 6.79037 6.80563 6.91380 7.34029 7.53729 7.62953 8.04508 8.23342 8.94342 9.37568 9.70822 10.58705 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014175 B = 0.006528 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.851176 B = 4288.065950 C = 4766.381216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.104 3.896 5 N -0.465 5.465 6 C -0.344 4.344 7 H 0.106 0.894 8 C 0.067 3.933 9 N -0.858 5.858 10 Si 0.875 3.125 11 H -0.274 1.274 12 H -0.290 1.290 13 H -0.263 1.263 14 C 0.487 3.513 15 O -0.581 6.581 16 C 0.083 3.917 17 H 0.070 0.930 18 C -0.100 4.100 19 C -0.118 4.118 20 C -0.115 4.115 21 C 0.051 3.949 22 N -0.517 5.517 23 C 0.046 3.954 24 C -0.147 4.147 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.275 0.725 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.029 0.971 43 H 0.026 0.974 44 H 0.089 0.911 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.893 2.961 6.987 7.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.164 4.164 4 C -0.019 4.019 5 N -0.186 5.186 6 C -0.471 4.471 7 H 0.123 0.877 8 C -0.141 4.141 9 N -0.494 5.494 10 Si 0.703 3.297 11 H -0.201 1.201 12 H -0.217 1.217 13 H -0.187 1.187 14 C 0.275 3.725 15 O -0.464 6.464 16 C -0.028 4.028 17 H 0.088 0.912 18 C -0.139 4.139 19 C -0.156 4.156 20 C -0.153 4.153 21 C -0.077 4.077 22 N -0.243 5.243 23 C -0.082 4.082 24 C -0.205 4.205 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.047 0.953 43 H 0.045 0.955 44 H 0.107 0.893 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.283 2.591 7.666 8.193 hybrid contribution 1.109 -0.766 -0.945 1.646 sum -0.173 1.825 6.721 6.967 Atomic orbital electron populations 1.21736 0.96144 1.00867 1.01748 1.21479 0.95606 0.97493 1.01563 1.21851 0.96019 0.96007 1.02526 1.21604 0.94034 0.85375 1.00894 1.43796 1.56991 1.11497 1.06346 1.19091 1.41402 0.96806 0.89780 0.87675 1.25287 0.95927 0.98189 0.94665 1.69768 1.40814 1.39780 0.98999 0.86996 0.79581 0.83682 0.79438 1.20095 1.21666 1.18697 1.20087 0.80693 0.88455 0.83246 1.90529 1.54480 1.70251 1.31131 1.21415 0.96712 0.93483 0.91208 0.91180 1.21414 0.96528 0.93430 1.02490 1.21570 0.99807 0.96493 0.97723 1.21579 0.97264 0.97798 0.98624 1.22172 0.96344 0.88666 1.00518 1.61726 1.25393 1.01862 1.35308 1.22150 0.91193 0.98429 0.96418 1.21860 0.99463 1.00599 0.98556 0.92893 0.92788 0.93293 0.92333 0.92298 0.91878 0.91349 0.91656 0.91742 0.91513 0.90821 0.91379 0.92080 0.92033 0.92106 0.91324 0.90512 0.95317 0.95548 0.89272 0.92768 0.91986 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.15 0.37 -1.65 16 2 C -0.12 -1.99 5.93 -26.73 -0.16 -2.15 16 3 C -0.13 -2.45 5.49 -26.73 -0.15 -2.59 16 4 C 0.10 2.32 3.98 -4.04 -0.02 2.30 16 5 N -0.47 -11.14 2.25 -114.81 -0.26 -11.40 16 6 C -0.34 -8.78 8.80 -14.93 -0.13 -8.91 16 7 H 0.11 2.79 6.62 -52.49 -0.35 2.44 16 8 C 0.07 1.73 5.30 -17.47 -0.09 1.64 16 9 N -0.86 -23.30 13.96 55.50 0.77 -22.53 16 10 Si 0.88 20.50 24.86 -169.99 -4.23 16.28 16 11 H -0.27 -6.16 6.67 56.52 0.38 -5.78 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 14 C 0.49 11.34 5.74 -10.98 -0.06 11.27 16 15 O -0.58 -14.55 14.85 5.55 0.08 -14.47 16 16 C 0.08 1.68 1.47 -68.87 -0.10 1.58 16 17 H 0.07 1.54 6.63 -51.93 -0.34 1.19 16 18 C -0.10 -1.80 5.30 -26.65 -0.14 -1.95 16 19 C -0.12 -1.73 6.00 -26.61 -0.16 -1.89 16 20 C -0.11 -1.55 6.09 -26.65 -0.16 -1.71 16 21 C 0.05 0.77 5.02 -3.83 -0.02 0.75 16 22 N -0.52 -9.53 4.37 -228.08 -1.00 -10.52 16 23 C 0.05 0.83 5.30 -3.82 -0.02 0.81 16 24 C -0.15 -2.10 9.39 37.16 0.35 -1.75 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.07 1.50 3.13 -51.93 -0.16 1.33 16 33 H 0.06 1.44 7.55 -51.93 -0.39 1.05 16 34 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.07 1.39 7.77 -51.93 -0.40 0.98 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 41 H 0.08 1.02 5.83 -51.93 -0.30 0.72 16 42 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.03 0.49 8.13 -51.93 -0.42 0.07 16 44 H 0.09 1.88 6.14 -51.93 -0.32 1.56 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 47 H 0.05 0.66 6.19 -51.93 -0.32 0.34 16 LS Contribution 353.34 15.07 5.32 5.32 Total: -1.00 -28.15 353.34 -8.31 -36.46 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -8.52 Total: 5.11 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -0.50 Total: -4.24 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -0.48 Total: -44.45 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.08 Total: -14.47 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.23 Total: 16.28 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.15 -8.31 -36.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181993196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.678 kcal (2) G-P(sol) polarization free energy of solvation -28.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds