Wall clock time and date at job start Tue Mar 31 2020 06:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46800 * 2 1 4 4 C 1.52998 * 109.46807 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46853 * 179.97438 * 4 3 2 6 6 C 1.37104 * 119.99812 * 264.03148 * 5 4 3 7 7 H 1.08001 * 119.99270 * 137.93400 * 6 5 4 8 8 C 1.38943 * 119.99967 * 317.94325 * 6 5 4 9 9 N 1.31413 * 120.00315 * 346.69801 * 8 6 5 10 10 Si 1.86801 * 119.99838 * 166.70133 * 8 6 5 11 11 H 1.48503 * 109.47120 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47155 * 119.99649 * 10 8 6 13 13 H 1.48502 * 109.47225 * 239.99563 * 10 8 6 14 14 C 1.34770 * 120.00393 * 84.03797 * 5 4 3 15 15 O 1.21292 * 119.99936 * 355.36613 * 14 5 4 16 16 C 1.50699 * 120.00290 * 175.64231 * 14 5 4 17 17 H 1.08997 * 109.46228 * 26.13869 * 16 14 5 18 18 C 1.53042 * 109.46199 * 266.15670 * 16 14 5 19 19 C 1.53125 * 109.27792 * 180.80194 * 18 16 14 20 20 C 1.53120 * 109.15870 * 57.65590 * 19 18 16 21 21 C 1.53034 * 109.27882 * 302.34729 * 20 19 18 22 22 N 1.46842 * 109.52836 * 59.17912 * 21 20 19 23 23 C 1.46901 * 111.00313 * 174.16310 * 22 21 20 24 24 C 1.53004 * 109.46617 * 287.64820 * 23 22 21 25 25 H 1.09001 * 109.47021 * 299.99950 * 1 2 3 26 26 H 1.08994 * 109.47338 * 60.00428 * 1 2 3 27 27 H 1.09007 * 109.46460 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46962 * 239.99547 * 2 1 3 29 29 H 1.09002 * 109.47049 * 119.99651 * 2 1 3 30 30 H 1.08998 * 109.47549 * 59.99499 * 3 2 1 31 31 H 1.09002 * 109.47035 * 299.99660 * 3 2 1 32 32 H 1.09002 * 109.47630 * 59.99898 * 4 3 2 33 33 H 1.09002 * 109.46950 * 299.99595 * 4 3 2 34 34 H 0.97003 * 119.99680 * 180.02562 * 9 8 6 35 35 H 1.08996 * 109.50601 * 300.74365 * 18 16 14 36 36 H 1.09001 * 109.50109 * 60.86343 * 18 16 14 37 37 H 1.08997 * 109.51786 * 177.56266 * 19 18 16 38 38 H 1.09000 * 109.52030 * 297.69033 * 19 18 16 39 39 H 1.08998 * 109.50321 * 62.28624 * 20 19 18 40 40 H 1.08994 * 109.50139 * 182.40381 * 20 19 18 41 41 H 1.08998 * 109.46184 * 179.19534 * 21 20 19 42 42 H 1.09002 * 109.46325 * 299.17174 * 21 20 19 43 43 H 1.08992 * 109.47258 * 47.64719 * 23 22 21 44 44 H 1.09003 * 109.47109 * 167.65062 * 23 22 21 45 45 H 1.08992 * 109.47224 * 299.99920 * 24 23 22 46 46 H 1.08995 * 109.46882 * 60.00227 * 24 23 22 47 47 H 1.08999 * 109.46601 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.4026 3.4286 -1.1825 7 1 4.1171 4.4536 -1.3676 8 6 5.1187 2.7228 -2.1415 9 7 5.6901 1.5819 -1.8271 10 14 5.2693 3.3957 -3.8775 11 1 4.5407 4.6861 -3.9732 12 1 6.7023 3.6105 -4.2025 13 1 4.6843 2.4250 -4.8372 14 6 4.1691 3.4999 1.1593 15 8 3.7861 2.9958 2.1938 16 6 4.7630 4.8849 1.1708 17 1 4.6168 5.3508 0.1963 18 6 6.2605 4.7950 1.4735 19 6 6.8557 6.2055 1.5040 20 6 6.1167 7.0402 2.5536 21 6 4.6234 7.0650 2.2196 22 7 4.1013 5.6926 2.2033 23 6 2.6434 5.6861 2.0227 24 6 1.9682 6.1691 3.3079 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3632 -1.0278 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9330 0.9288 -0.8908 33 1 3.9337 0.9286 0.8892 34 1 6.1903 1.0893 -2.4966 35 1 6.4080 4.3168 2.4418 36 1 6.7539 4.2085 0.6985 37 1 7.9132 6.1490 1.7620 38 1 6.7441 6.6691 0.5239 39 1 6.2619 6.5974 3.5389 40 1 6.5073 8.0578 2.5502 41 1 4.0924 7.6467 2.9730 42 1 4.4779 7.5204 1.2400 43 1 2.3762 6.3497 1.2004 44 1 2.3100 4.6735 1.7955 45 1 2.2355 5.5055 4.1302 46 1 2.3017 7.1816 3.5350 47 1 0.8865 6.1647 3.1738 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181993199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:21 Heat of formation + Delta-G solvation = -51.592636 kcal Electronic energy + Delta-G solvation = -24319.020843 eV Core-core repulsion = 21114.949503 eV Total energy + Delta-G solvation = -3204.071340 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.51163 -37.46065 -35.14748 -34.01651 -33.72950 -31.46083 -30.67759 -29.34500 -28.27437 -24.91515 -24.33823 -23.63067 -22.11827 -20.96878 -20.40409 -19.40814 -18.94845 -16.95947 -16.01561 -15.32294 -14.92179 -14.70966 -14.27696 -14.16873 -14.09659 -13.86144 -13.41919 -13.10685 -13.05126 -12.75624 -12.40052 -12.15319 -12.10753 -11.87558 -11.42423 -11.38684 -11.33385 -11.21848 -11.07210 -10.78711 -10.64235 -10.51581 -10.48324 -10.38549 -10.32968 -10.16111 -10.01520 -9.82402 -9.68036 -9.03273 -8.25486 -7.69018 -7.39464 -6.35086 -4.13730 3.08261 3.18929 3.21356 3.92065 4.05080 4.31492 4.87439 4.95353 5.21022 5.28694 5.36142 5.50992 5.54851 5.56958 5.68308 5.71399 5.79760 5.85849 5.89102 5.92985 6.08287 6.09507 6.15898 6.22055 6.26583 6.26648 6.32447 6.39884 6.41972 6.44046 6.51100 6.54084 6.60971 6.66038 6.74484 6.77128 6.87975 6.93247 7.15866 7.36791 7.49387 7.61696 7.68648 8.00852 8.38853 9.09361 9.57423 9.99620 10.66110 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011961 B = 0.007582 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.361907 B = 3692.087306 C = 5268.015025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.129 4.129 4 C 0.122 3.878 5 N -0.442 5.442 6 C -0.336 4.336 7 H 0.083 0.917 8 C 0.047 3.953 9 N -0.862 5.862 10 Si 0.911 3.089 11 H -0.269 1.269 12 H -0.280 1.280 13 H -0.279 1.279 14 C 0.483 3.517 15 O -0.586 6.586 16 C 0.085 3.915 17 H 0.061 0.939 18 C -0.097 4.097 19 C -0.118 4.118 20 C -0.115 4.115 21 C 0.056 3.944 22 N -0.519 5.519 23 C 0.051 3.949 24 C -0.139 4.139 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.048 0.952 34 H 0.268 0.732 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.027 0.973 43 H 0.023 0.977 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.046 0.954 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.866 6.076 2.745 7.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.167 4.167 4 C -0.001 4.001 5 N -0.161 5.161 6 C -0.464 4.464 7 H 0.101 0.899 8 C -0.159 4.159 9 N -0.499 5.499 10 Si 0.738 3.262 11 H -0.193 1.193 12 H -0.206 1.206 13 H -0.205 1.205 14 C 0.271 3.729 15 O -0.470 6.470 16 C -0.026 4.026 17 H 0.079 0.921 18 C -0.135 4.135 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.072 4.072 22 N -0.244 5.244 23 C -0.077 4.077 24 C -0.196 4.196 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.041 0.959 44 H 0.101 0.899 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.837 5.435 3.593 7.106 hybrid contribution -0.015 0.656 -1.905 2.015 sum -2.852 6.091 1.688 6.934 Atomic orbital electron populations 1.21757 0.96709 1.00621 1.01426 1.21427 0.94907 0.97835 1.01537 1.21920 0.98182 0.95412 1.01211 1.21323 0.90763 0.85045 1.02986 1.43441 1.55862 1.11947 1.04846 1.19343 1.34644 0.98979 0.93468 0.89938 1.25409 0.94242 0.96205 1.00078 1.69880 1.30668 1.15007 1.34343 0.86125 0.78152 0.79203 0.82768 1.19323 1.20616 1.20521 1.20230 0.81276 0.87839 0.83586 1.90529 1.53108 1.70685 1.32643 1.21424 0.94763 0.93110 0.93269 0.92138 1.21355 0.93091 0.96457 1.02588 1.21574 0.98986 0.96172 0.98814 1.21577 0.94499 0.99233 0.99956 1.22092 0.95679 0.89930 0.99466 1.61687 1.03899 1.10392 1.48464 1.22059 0.87616 1.01822 0.96192 1.21701 0.98821 1.00587 0.98531 0.93096 0.93109 0.93468 0.92331 0.92429 0.92790 0.92599 0.88099 0.93352 0.92131 0.91508 0.90467 0.92122 0.92318 0.91274 0.92218 0.91095 0.95512 0.95923 0.89895 0.91800 0.93472 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.76 16 2 C -0.12 -2.03 5.93 -26.73 -0.16 -2.19 16 3 C -0.13 -2.64 5.49 -26.73 -0.15 -2.79 16 4 C 0.12 2.92 4.81 -4.04 -0.02 2.90 16 5 N -0.44 -11.00 2.51 -114.81 -0.29 -11.29 16 6 C -0.34 -8.37 8.38 -14.93 -0.13 -8.49 16 7 H 0.08 2.02 6.64 -52.49 -0.35 1.67 16 8 C 0.05 1.15 5.06 -17.47 -0.09 1.06 16 9 N -0.86 -22.34 11.39 55.50 0.63 -21.70 16 10 Si 0.91 19.21 29.57 -169.99 -5.03 14.19 16 11 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 12 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 13 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 14 C 0.48 11.77 5.24 -10.99 -0.06 11.71 16 15 O -0.59 -15.54 15.34 5.55 0.09 -15.46 16 16 C 0.09 1.79 1.77 -68.87 -0.12 1.66 16 17 H 0.06 1.32 6.14 -51.93 -0.32 1.00 16 18 C -0.10 -1.88 5.36 -26.64 -0.14 -2.02 16 19 C -0.12 -1.81 6.00 -26.60 -0.16 -1.97 16 20 C -0.11 -1.61 6.09 -26.65 -0.16 -1.77 16 21 C 0.06 0.86 5.30 -3.84 -0.02 0.84 16 22 N -0.52 -9.74 4.22 -228.08 -0.96 -10.71 16 23 C 0.05 0.92 5.36 -3.82 -0.02 0.90 16 24 C -0.14 -2.08 9.97 37.16 0.37 -1.71 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 1.17 8.01 -51.93 -0.42 0.75 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.10 2.54 5.65 -51.93 -0.29 2.25 16 33 H 0.05 1.21 7.68 -51.93 -0.40 0.81 16 34 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.97 6.53 -51.93 -0.34 0.63 16 42 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 44 H 0.08 1.76 5.83 -51.93 -0.30 1.46 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.05 0.62 6.68 -51.93 -0.35 0.28 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 360.67 15.07 5.44 5.44 Total: -1.00 -27.71 360.67 -9.27 -36.98 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -8.66 Total: 6.17 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -0.48 Total: -3.61 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: -0.62 Total: -43.70 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.09 Total: -15.46 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.71 -9.27 -36.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181993199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.611 kcal (2) G-P(sol) polarization free energy of solvation -27.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds