Wall clock time and date at job start Tue Mar 31 2020 05:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47252 * 2 1 4 4 C 1.52992 * 109.47255 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47365 * 179.97438 * 4 3 2 6 6 O 1.21281 * 119.99491 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00130 * 179.97438 * 5 4 3 8 8 C 1.46924 * 120.63251 * 0.02562 * 7 5 4 9 9 C 1.53194 * 108.77390 * 233.62945 * 8 7 5 10 10 C 1.53040 * 109.31367 * 305.36176 * 9 8 7 11 11 H 1.08995 * 109.45933 * 301.36091 * 10 9 8 12 12 C 1.53001 * 109.45855 * 181.38794 * 10 9 8 13 13 N 1.46490 * 109.47264 * 64.97245 * 12 10 9 14 14 C 1.36935 * 120.00121 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00139 * 0.02562 * 14 13 12 16 16 C 1.38816 * 120.00401 * 180.02562 * 14 13 12 17 17 N 1.31624 * 119.99569 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00172 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46685 * 269.99637 * 18 16 14 20 20 H 1.48494 * 109.47357 * 29.99716 * 18 16 14 21 21 H 1.48502 * 109.47120 * 150.00435 * 18 16 14 22 22 C 1.53047 * 109.52411 * 61.37449 * 10 9 8 23 23 H 1.09001 * 109.49516 * 178.67707 * 22 10 9 24 24 C 1.53000 * 109.49788 * 58.58043 * 22 10 9 25 25 C 1.46931 * 120.62852 * 180.02562 * 7 5 4 26 26 H 1.09006 * 109.46836 * 300.00067 * 1 2 3 27 27 H 1.08994 * 109.47483 * 59.99870 * 1 2 3 28 28 H 1.09001 * 109.47554 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47221 * 239.99961 * 2 1 3 30 30 H 1.08999 * 109.46858 * 119.99804 * 2 1 3 31 31 H 1.09003 * 109.47178 * 59.99665 * 3 2 1 32 32 H 1.09008 * 109.47037 * 300.00309 * 3 2 1 33 33 H 1.09003 * 109.47520 * 59.99606 * 4 3 2 34 34 H 1.09001 * 109.47291 * 299.99314 * 4 3 2 35 35 H 1.08997 * 109.58682 * 113.84649 * 8 7 5 36 36 H 1.09000 * 109.70075 * 353.48475 * 8 7 5 37 37 H 1.09002 * 109.49391 * 185.41031 * 9 8 7 38 38 H 1.08995 * 109.50041 * 65.31952 * 9 8 7 39 39 H 1.09003 * 109.46836 * 304.96952 * 12 10 9 40 40 H 1.08999 * 109.47071 * 184.97991 * 12 10 9 41 41 H 0.97000 * 120.00577 * 0.02562 * 13 12 10 42 42 H 0.97001 * 119.99885 * 359.97438 * 17 16 14 43 43 H 1.08998 * 109.47104 * 59.99427 * 24 22 10 44 44 H 1.08995 * 109.46976 * 179.97438 * 24 22 10 45 45 H 1.09003 * 109.47162 * 300.00093 * 24 22 10 46 46 H 1.09001 * 109.58671 * 246.15785 * 25 7 5 47 47 H 1.09001 * 109.58811 * 6.44189 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0723 2.8633 -0.0013 6 8 3.2842 3.7851 -0.0017 7 7 5.3974 3.1095 -0.0014 8 6 6.3644 2.0034 -0.0015 9 6 7.3365 2.1983 1.1663 10 6 7.9709 3.5877 1.0703 11 1 8.4905 3.6845 0.1171 12 6 8.9684 3.7728 2.2156 13 7 10.0765 2.8282 2.0556 14 6 11.0975 2.8096 2.9679 15 1 11.0857 3.4910 3.8056 16 6 12.1479 1.9148 2.8160 17 7 12.1626 1.0845 1.7948 18 14 13.5404 1.8890 4.0610 19 1 14.6063 2.8292 3.6308 20 1 13.0234 2.3014 5.3905 21 1 14.0985 0.5157 4.1510 22 6 6.8795 4.6562 1.1670 23 1 7.3342 5.6458 1.1221 24 6 6.1265 4.4988 2.4896 25 6 5.9023 4.4894 -0.0014 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8908 34 1 3.9337 0.9286 0.8892 35 1 6.9174 2.0015 -0.9407 36 1 5.8386 1.0557 0.1150 37 1 8.1165 1.4383 1.1211 38 1 6.7958 2.1096 2.1086 39 1 8.4682 3.5885 3.1664 40 1 9.3545 4.7920 2.1999 41 1 10.0875 2.2163 1.3030 42 1 11.4394 1.0977 1.1486 43 1 6.8229 4.6148 3.3201 44 1 5.3496 5.2602 2.5582 45 1 5.6710 3.5095 2.5329 46 1 6.4177 4.6898 -0.9408 47 1 5.0697 5.1832 0.1138 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183874452.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:00 Heat of formation + Delta-G solvation = -54.982216 kcal Electronic energy + Delta-G solvation = -23026.799056 eV Core-core repulsion = 19822.580733 eV Total energy + Delta-G solvation = -3204.218323 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.49038 -38.27624 -35.59367 -35.11607 -33.60170 -31.93941 -30.64723 -30.21057 -27.09650 -26.71738 -24.57394 -23.40678 -23.07498 -21.70683 -21.25788 -19.71787 -18.31510 -17.38029 -17.00328 -16.23436 -15.81125 -15.25824 -14.94788 -14.69647 -14.20468 -13.90721 -13.87941 -13.79508 -13.63836 -13.07591 -12.93581 -12.80085 -12.54315 -12.44757 -12.24853 -11.64932 -11.59124 -11.54479 -11.28540 -11.19253 -11.00423 -10.81762 -10.73367 -10.68649 -10.39625 -10.24078 -10.17761 -9.98668 -9.71994 -9.17885 -8.87097 -8.60460 -6.99413 -6.11332 -3.10289 2.59127 2.95536 3.51009 3.55705 3.69638 4.34526 4.60790 4.65176 4.69541 4.74811 4.85802 4.94691 4.99733 5.06547 5.08468 5.19426 5.25129 5.33348 5.45667 5.51685 5.56418 5.58292 5.61135 5.68516 5.69369 5.75529 5.79773 5.82367 5.88505 5.92777 5.97745 6.01565 6.12734 6.15996 6.21327 6.31065 6.36657 6.43928 6.58311 6.72928 6.85701 7.37607 7.81252 8.13726 8.75275 9.23146 10.09334 10.24608 11.37468 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024912 B = 0.003268 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.681807 B = 8565.985131 C = 9207.053238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.104 4.104 4 C -0.142 4.142 5 C 0.514 3.486 6 O -0.549 6.549 7 N -0.607 5.607 8 C 0.105 3.895 9 C -0.127 4.127 10 C -0.089 4.089 11 H 0.069 0.931 12 C 0.164 3.836 13 N -0.743 5.743 14 C -0.329 4.329 15 H 0.063 0.937 16 C -0.047 4.047 17 N -0.946 5.946 18 Si 1.082 2.918 19 H -0.296 1.296 20 H -0.295 1.295 21 H -0.288 1.288 22 C -0.098 4.098 23 H 0.081 0.919 24 C -0.144 4.144 25 C 0.116 3.884 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.022 0.978 40 H 0.018 0.982 41 H 0.366 0.634 42 H 0.254 0.746 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.299 0.400 -4.906 19.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.142 4.142 4 C -0.181 4.181 5 C 0.303 3.697 6 O -0.427 6.427 7 N -0.340 5.340 8 C -0.017 4.017 9 C -0.166 4.166 10 C -0.108 4.108 11 H 0.088 0.912 12 C 0.037 3.963 13 N -0.389 5.389 14 C -0.460 4.460 15 H 0.081 0.919 16 C -0.244 4.244 17 N -0.592 5.592 18 Si 0.913 3.087 19 H -0.223 1.223 20 H -0.222 1.222 21 H -0.214 1.214 22 C -0.117 4.117 23 H 0.099 0.901 24 C -0.201 4.201 25 C -0.006 4.006 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.040 0.960 40 H 0.035 0.965 41 H 0.199 0.801 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.278 0.310 -4.296 18.778 hybrid contribution -1.194 0.574 -0.598 1.453 sum -19.472 0.883 -4.894 20.097 Atomic orbital electron populations 1.21757 0.95761 1.01488 1.01954 1.21555 0.96082 0.96647 1.02066 1.21371 0.92798 0.96524 1.03474 1.21740 0.97937 0.94170 1.04297 1.20715 0.81702 0.91718 0.75605 1.90665 1.54869 1.46655 1.50540 1.48141 1.05510 1.07561 1.72798 1.21858 0.91043 0.89141 0.99707 1.21964 0.98410 0.98335 0.97844 1.21319 0.95269 0.93881 1.00370 0.91220 1.20646 0.87862 0.93166 0.94665 1.42392 1.23180 1.42578 1.30762 1.20065 1.01419 1.19171 1.05367 0.91851 1.25757 1.00707 0.95573 1.02346 1.70863 1.34984 1.39204 1.14113 0.83200 0.75287 0.76050 0.74147 1.22343 1.22197 1.21385 1.21464 0.95490 0.99685 0.95107 0.90101 1.21846 0.99785 1.01546 0.96916 1.21664 0.97865 0.83022 0.98058 0.92688 0.92729 0.92801 0.91988 0.91912 0.91288 0.91354 0.89016 0.88868 0.91224 0.89848 0.89882 0.91253 0.95985 0.96453 0.80077 0.93477 0.92010 0.93272 0.92666 0.91729 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.13 -0.94 5.93 -26.73 -0.16 -1.10 16 3 C -0.10 -0.96 4.50 -26.74 -0.12 -1.08 16 4 C -0.14 -1.32 4.05 -27.89 -0.11 -1.44 16 5 C 0.51 6.55 7.70 -10.99 -0.08 6.46 16 6 O -0.55 -8.79 15.39 5.56 0.09 -8.71 16 7 N -0.61 -7.37 2.41 -172.74 -0.42 -7.79 16 8 C 0.11 1.17 6.34 -3.71 -0.02 1.15 16 9 C -0.13 -1.79 4.90 -26.61 -0.13 -1.92 16 10 C -0.09 -1.37 1.96 -90.57 -0.18 -1.54 16 11 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 12 C 0.16 3.25 5.19 -4.05 -0.02 3.23 16 13 N -0.74 -18.38 5.31 -59.91 -0.32 -18.70 16 14 C -0.33 -9.29 9.99 -15.06 -0.15 -9.44 16 15 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 16 C -0.05 -1.35 5.50 -17.43 -0.10 -1.45 16 17 N -0.95 -28.95 13.70 55.49 0.76 -28.19 16 18 Si 1.08 25.95 29.92 -169.99 -5.09 20.87 16 19 H -0.30 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 C -0.10 -1.29 2.72 -90.48 -0.25 -1.53 16 23 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 24 C -0.14 -1.92 8.38 37.16 0.31 -1.60 16 25 C 0.12 1.45 5.83 -3.69 -0.02 1.43 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.07 0.70 8.10 -51.92 -0.42 0.28 16 33 H 0.09 0.71 7.94 -51.93 -0.41 0.30 16 34 H 0.09 0.78 7.70 -51.93 -0.40 0.38 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.76 5.94 -51.93 -0.31 0.45 16 37 H 0.08 1.32 7.15 -51.93 -0.37 0.95 16 38 H 0.07 1.00 6.33 -51.93 -0.33 0.67 16 39 H 0.02 0.45 6.74 -51.93 -0.35 0.10 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.37 9.11 5.68 -40.82 -0.23 8.88 16 42 H 0.25 7.59 6.77 -40.82 -0.28 7.32 16 43 H 0.06 0.86 6.58 -51.93 -0.34 0.52 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.76 5.97 -51.93 -0.31 0.45 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.09 1.20 7.00 -51.93 -0.36 0.83 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -32.63 358.37 -8.63 -41.26 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -8.39 Total: 5.39 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -0.66 Total: -9.53 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.03 Total: -54.68 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.09 Total: 20.87 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.63 -8.63 -41.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183874452.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.723 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds