Wall clock time and date at job start Tue Mar 31 2020 05:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47038 * 2 1 4 4 C 1.52997 * 109.47038 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47043 * 180.02562 * 4 3 2 6 6 O 1.21280 * 120.00234 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99982 * 179.97438 * 5 4 3 8 8 C 1.46929 * 120.62811 * 0.02562 * 7 5 4 9 9 C 1.53196 * 108.77486 * 126.39016 * 8 7 5 10 10 C 1.53037 * 109.31315 * 54.63188 * 9 8 7 11 11 H 1.09003 * 109.46385 * 58.64280 * 10 9 8 12 12 C 1.52999 * 109.46122 * 178.61348 * 10 9 8 13 13 N 1.46507 * 109.47222 * 295.00019 * 12 10 9 14 14 C 1.36934 * 120.00064 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00144 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99938 * 180.02562 * 14 13 12 17 17 N 1.31620 * 119.99951 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99925 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47175 * 90.00049 * 18 16 14 20 20 H 1.48499 * 109.46801 * 210.00174 * 18 16 14 21 21 H 1.48495 * 109.47219 * 329.99955 * 18 16 14 22 22 C 1.53043 * 109.53875 * 298.63222 * 10 9 8 23 23 H 1.08990 * 109.49664 * 301.41726 * 22 10 9 24 24 C 1.53000 * 109.49799 * 181.31351 * 22 10 9 25 25 C 1.46918 * 120.63268 * 179.97438 * 7 5 4 26 26 H 1.09003 * 109.47292 * 299.99673 * 1 2 3 27 27 H 1.08998 * 109.47318 * 59.99627 * 1 2 3 28 28 H 1.08996 * 109.47070 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47292 * 240.00327 * 2 1 3 30 30 H 1.08998 * 109.47318 * 120.00373 * 2 1 3 31 31 H 1.09000 * 109.46517 * 60.00454 * 3 2 1 32 32 H 1.08998 * 109.47371 * 300.00341 * 3 2 1 33 33 H 1.09003 * 109.47292 * 60.00327 * 4 3 2 34 34 H 1.08998 * 109.47318 * 300.00373 * 4 3 2 35 35 H 1.08998 * 109.59209 * 6.59831 * 8 7 5 36 36 H 1.09003 * 109.58217 * 246.17112 * 8 7 5 37 37 H 1.08998 * 109.49640 * 174.58442 * 9 8 7 38 38 H 1.08994 * 109.49723 * 294.64754 * 9 8 7 39 39 H 1.09001 * 109.47059 * 54.99840 * 12 10 9 40 40 H 1.09000 * 109.47595 * 175.00253 * 12 10 9 41 41 H 0.97001 * 119.99705 * 0.02562 * 13 12 10 42 42 H 0.97002 * 119.99849 * 180.02562 * 17 16 14 43 43 H 1.08999 * 109.46654 * 60.00615 * 24 22 10 44 44 H 1.09000 * 109.47055 * 180.02562 * 24 22 10 45 45 H 1.09001 * 109.47391 * 300.00469 * 24 22 10 46 46 H 1.09008 * 109.58859 * 113.81891 * 25 7 5 47 47 H 1.09002 * 109.58786 * 353.40093 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0722 2.8634 0.0000 6 8 3.2842 3.7852 0.0013 7 7 5.3973 3.1097 0.0001 8 6 6.3643 2.0034 -0.0010 9 6 7.3366 2.1996 -1.1685 10 6 7.9710 3.5889 -1.0709 11 1 8.4905 3.6848 -0.1175 12 6 8.9685 3.7753 -2.2159 13 7 10.0771 2.8308 -2.0564 14 6 11.0978 2.8126 -2.9691 15 1 11.0854 3.4942 -3.8068 16 6 12.1479 1.9174 -2.8182 17 7 13.1292 1.9003 -3.6952 18 14 12.1690 0.7380 -1.3698 19 1 11.4771 -0.5208 -1.7463 20 1 13.5746 0.4378 -0.9964 21 1 11.4722 1.3596 -0.2151 22 6 6.8797 4.6576 -1.1664 23 1 6.3434 4.5467 -2.1087 24 6 7.5182 6.0465 -1.1017 25 6 5.9023 4.4893 0.0002 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6766 1.9562 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 3.9329 0.9289 -0.8909 34 1 3.9337 0.9285 0.8890 35 1 5.8368 1.0570 -0.1198 36 1 6.9172 2.0006 0.9384 37 1 8.1166 1.4395 -1.1239 38 1 6.7961 2.1113 -2.1108 39 1 8.4686 3.5914 -3.1669 40 1 9.3544 4.7945 -2.1994 41 1 10.0877 2.2179 -1.3046 42 1 13.8628 1.2744 -3.5900 43 1 8.2157 6.1647 -1.9310 44 1 6.7406 6.8074 -1.1693 45 1 8.0531 6.1570 -0.1584 46 1 6.4173 4.6900 0.9397 47 1 5.0699 5.1831 -0.1179 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183874454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:04 Heat of formation + Delta-G solvation = -53.804675 kcal Electronic energy + Delta-G solvation = -22870.938439 eV Core-core repulsion = 19666.771178 eV Total energy + Delta-G solvation = -3204.167261 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.42324 -38.25926 -35.62234 -35.13088 -33.69330 -32.08518 -30.81209 -30.66859 -27.21513 -27.01013 -24.63694 -23.42262 -22.52119 -21.46677 -21.13113 -19.99125 -18.97014 -17.66186 -16.99434 -16.25691 -16.03938 -15.10548 -14.87979 -14.49819 -14.20270 -14.13577 -13.97019 -13.71701 -13.38496 -13.10752 -13.08177 -12.69479 -12.49918 -12.45073 -12.01529 -11.96283 -11.77285 -11.58752 -11.38583 -11.32818 -11.24614 -10.98964 -10.90300 -10.84339 -10.52021 -10.42610 -10.13720 -10.08005 -9.77616 -9.59498 -8.90380 -8.66320 -7.23105 -5.78176 -3.13323 2.54366 2.90069 3.33871 3.35433 3.42453 4.30698 4.56732 4.57605 4.66573 4.69864 4.79269 4.85946 4.96305 4.99156 5.03547 5.19357 5.22065 5.28606 5.38945 5.45387 5.51991 5.53921 5.56231 5.60680 5.66263 5.70553 5.72312 5.77743 5.81691 5.85533 5.89938 5.98887 6.10327 6.13216 6.17083 6.21770 6.34079 6.37695 6.48378 6.72927 6.80824 7.32170 7.98667 8.08895 8.41019 9.20257 9.92510 10.12638 11.40481 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019790 B = 0.003650 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.493820 B = 7669.523543 C = 8671.034479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.104 4.104 4 C -0.141 4.141 5 C 0.514 3.486 6 O -0.548 6.548 7 N -0.611 5.611 8 C 0.104 3.896 9 C -0.128 4.128 10 C -0.093 4.093 11 H 0.071 0.929 12 C 0.160 3.840 13 N -0.755 5.755 14 C -0.242 4.242 15 H 0.089 0.911 16 C 0.003 3.997 17 N -0.935 5.935 18 Si 0.884 3.116 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.096 4.096 23 H 0.074 0.926 24 C -0.148 4.148 25 C 0.117 3.883 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.025 0.975 40 H 0.033 0.967 41 H 0.359 0.641 42 H 0.259 0.741 43 H 0.069 0.931 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.164 -1.130 10.045 23.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.142 4.142 4 C -0.181 4.181 5 C 0.303 3.697 6 O -0.426 6.426 7 N -0.344 5.344 8 C -0.018 4.018 9 C -0.167 4.167 10 C -0.112 4.112 11 H 0.090 0.910 12 C 0.034 3.966 13 N -0.401 5.401 14 C -0.372 4.372 15 H 0.107 0.893 16 C -0.193 4.193 17 N -0.583 5.583 18 Si 0.714 3.286 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.116 4.116 23 H 0.092 0.908 24 C -0.205 4.205 25 C -0.006 4.006 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.043 0.957 40 H 0.050 0.950 41 H 0.192 0.808 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.440 -0.582 9.851 23.602 hybrid contribution 0.426 -1.002 0.940 1.438 sum -21.014 -1.584 10.791 23.676 Atomic orbital electron populations 1.21757 0.95743 1.01500 1.01979 1.21555 0.96106 0.96628 1.02050 1.21377 0.92769 0.96550 1.03516 1.21740 0.97976 0.94094 1.04306 1.20741 0.81677 0.91769 0.75561 1.90670 1.54866 1.46665 1.50437 1.48187 1.05551 1.07641 1.72980 1.21875 0.91076 0.89243 0.99642 1.21956 0.98397 0.98390 0.97912 1.21393 0.95586 0.93617 1.00608 0.91045 1.20740 0.87659 0.93592 0.94657 1.42732 1.23942 1.42976 1.30463 1.19065 0.97704 1.16620 1.03823 0.89298 1.24680 0.96917 0.99496 0.98201 1.69703 1.11839 1.40013 1.36765 0.86553 0.76957 0.81776 0.83284 1.21074 1.21749 1.20363 1.21428 0.95820 0.95693 0.98653 0.90767 1.21840 1.00697 0.95166 1.02844 1.21676 0.97803 0.82759 0.98330 0.92724 0.92659 0.92800 0.91900 0.92013 0.91336 0.91245 0.88793 0.89025 0.89769 0.91229 0.89997 0.91299 0.95689 0.94970 0.80767 0.93079 0.91167 0.92882 0.92535 0.91670 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.13 -0.89 5.93 -26.73 -0.16 -1.05 16 3 C -0.10 -0.93 4.50 -26.73 -0.12 -1.05 16 4 C -0.14 -1.25 4.05 -27.88 -0.11 -1.36 16 5 C 0.51 6.35 7.70 -10.98 -0.08 6.26 16 6 O -0.55 -8.63 15.40 5.56 0.09 -8.54 16 7 N -0.61 -7.14 2.97 -172.81 -0.51 -7.65 16 8 C 0.10 1.08 6.34 -3.71 -0.02 1.06 16 9 C -0.13 -1.67 5.25 -26.61 -0.14 -1.81 16 10 C -0.09 -1.33 1.73 -90.58 -0.16 -1.49 16 11 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 12 C 0.16 2.98 5.41 -4.04 -0.02 2.96 16 13 N -0.76 -17.40 5.12 -59.90 -0.31 -17.71 16 14 C -0.24 -6.79 10.47 -15.06 -0.16 -6.94 16 15 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 16 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 17 N -0.94 -29.26 13.97 55.49 0.78 -28.48 16 18 Si 0.88 21.64 27.73 -169.99 -4.71 16.93 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 22 C -0.10 -1.20 2.41 -90.54 -0.22 -1.42 16 23 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 24 C -0.15 -1.72 8.82 37.16 0.33 -1.39 16 25 C 0.12 1.39 5.71 -3.75 -0.02 1.37 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.09 0.73 7.69 -51.93 -0.40 0.33 16 34 H 0.09 0.66 7.94 -51.93 -0.41 0.25 16 35 H 0.08 0.69 5.93 -51.93 -0.31 0.38 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.17 7.15 -51.93 -0.37 0.80 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.03 0.61 6.14 -51.93 -0.32 0.29 16 41 H 0.36 7.98 4.71 -40.82 -0.19 7.79 16 42 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 43 H 0.07 0.89 6.29 -51.93 -0.33 0.56 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 47 H 0.09 1.16 7.01 -51.93 -0.36 0.79 16 LS Contribution 360.95 15.07 5.44 5.44 Total: -1.00 -32.57 360.95 -8.47 -41.04 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -8.62 Total: 4.51 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -0.62 Total: -5.54 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.05 Total: -53.84 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.93 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.57 -8.47 -41.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183874454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.762 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds