Wall clock time and date at job start Tue Mar 31 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47184 * 2 1 4 4 C 1.53003 * 109.46813 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.46624 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00521 * 359.73045 * 5 4 3 7 7 N 1.34784 * 119.99774 * 180.02562 * 5 4 3 8 8 C 1.46927 * 120.62699 * 359.44533 * 7 5 4 9 9 C 1.52755 * 109.00696 * 233.58141 * 8 7 5 10 10 C 1.53035 * 109.38924 * 305.59167 * 9 8 7 11 11 H 1.09005 * 109.46064 * 301.22095 * 10 9 8 12 12 C 1.52997 * 109.45481 * 181.25503 * 10 9 8 13 13 N 1.46502 * 109.47201 * 64.93532 * 12 10 9 14 14 C 1.36932 * 120.00077 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00073 * 0.02562 * 14 13 12 16 16 C 1.38811 * 120.00127 * 180.02562 * 14 13 12 17 17 N 1.31619 * 120.00050 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00226 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47108 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47372 * 119.99822 * 18 16 14 21 21 H 1.48508 * 109.46803 * 239.99929 * 18 16 14 22 22 C 1.53044 * 109.53745 * 61.23716 * 10 9 8 23 23 H 1.09005 * 109.49454 * 58.59153 * 22 10 9 24 24 C 1.52996 * 109.52310 * 178.66933 * 22 10 9 25 25 C 1.46923 * 120.63216 * 179.72717 * 7 5 4 26 26 H 1.09006 * 109.46890 * 59.99659 * 1 2 3 27 27 H 1.08994 * 109.47397 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47065 * 300.00400 * 1 2 3 29 29 H 1.08998 * 109.47065 * 239.99600 * 2 1 3 30 30 H 1.09001 * 109.46892 * 119.99864 * 2 1 3 31 31 H 1.09001 * 109.46902 * 60.00345 * 3 2 1 32 32 H 1.08993 * 109.47243 * 300.00020 * 3 2 1 33 33 H 1.09001 * 109.46782 * 60.00667 * 4 3 2 34 34 H 1.08993 * 109.47555 * 300.00224 * 4 3 2 35 35 H 1.09000 * 109.58817 * 353.42412 * 8 7 5 36 36 H 1.09005 * 109.58520 * 113.84651 * 8 7 5 37 37 H 1.09008 * 109.56349 * 185.55747 * 9 8 7 38 38 H 1.09004 * 109.38523 * 65.52320 * 9 8 7 39 39 H 1.08998 * 109.47255 * 184.94011 * 12 10 9 40 40 H 1.09006 * 109.46956 * 304.94351 * 12 10 9 41 41 H 0.97002 * 119.99546 * 0.02562 * 13 12 10 42 42 H 0.97005 * 120.00463 * 180.02562 * 17 16 14 43 43 H 1.09006 * 109.47056 * 179.85866 * 24 22 10 44 44 H 1.08996 * 109.47439 * 299.85348 * 24 22 10 45 45 H 1.08991 * 109.47580 * 59.86175 * 24 22 10 46 46 H 1.08997 * 109.58570 * 246.16095 * 25 7 5 47 47 H 1.09000 * 109.58284 * 6.44197 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8632 0.0000 6 8 3.2843 3.7851 -0.0058 7 7 5.3975 3.1095 -0.0001 8 6 6.3644 2.0033 0.0126 9 6 7.3354 2.2046 1.1746 10 6 7.9699 3.5933 1.0717 11 1 8.4908 3.6849 0.1185 12 6 8.9660 3.7846 2.2171 13 7 10.0739 2.8383 2.0640 14 6 11.0932 2.8237 2.9783 15 1 11.0803 3.5096 3.8124 16 6 12.1432 1.9275 2.8329 17 7 12.1588 1.0913 1.8166 18 14 13.5334 1.9071 4.0805 19 1 13.2808 2.9372 5.1199 20 1 13.6071 0.5679 4.7177 21 1 14.8177 2.2006 3.3951 22 6 6.8786 4.6626 1.1611 23 1 6.3412 4.5559 2.1034 24 6 7.5167 6.0514 1.0915 25 6 5.9025 4.4892 -0.0067 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.9285 -0.8892 34 1 3.9330 0.9287 0.8908 35 1 5.8366 1.0580 0.1387 36 1 6.9192 1.9921 -0.9256 37 1 8.1155 1.4443 1.1343 38 1 6.7941 2.1208 2.1170 39 1 9.3528 4.8034 2.1960 40 1 8.4645 3.6059 3.1684 41 1 10.0853 2.2221 1.3150 42 1 12.8923 0.4647 1.7152 43 1 6.7385 6.8123 1.1528 44 1 8.2111 6.1744 1.9226 45 1 8.0549 6.1573 0.1497 46 1 6.4187 4.6848 -0.9466 47 1 5.0697 5.1836 0.1042 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183874455.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:09 Heat of formation + Delta-G solvation = -58.354002 kcal Electronic energy + Delta-G solvation = -22777.267152 eV Core-core repulsion = 19572.902617 eV Total energy + Delta-G solvation = -3204.364535 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.32737 -38.14312 -35.55303 -34.96835 -33.59751 -32.00843 -30.73172 -30.29030 -26.94102 -26.86467 -24.54678 -23.53366 -22.46467 -21.47241 -21.15837 -19.82905 -18.85999 -17.24833 -16.82922 -16.18551 -15.93819 -15.04488 -14.82020 -14.46369 -14.03384 -13.95484 -13.87892 -13.61759 -13.50643 -13.05263 -12.85417 -12.51036 -12.47673 -12.38353 -11.92850 -11.84360 -11.64954 -11.52576 -11.29606 -11.19426 -11.00082 -10.88505 -10.82177 -10.78632 -10.37927 -10.26650 -10.17123 -9.95404 -9.69146 -9.63834 -8.87373 -8.56269 -6.91214 -5.78066 -3.05759 2.62518 2.99770 3.42098 3.48179 3.50063 4.39140 4.57774 4.64634 4.72561 4.81136 4.93627 4.95545 5.04543 5.09695 5.15212 5.28409 5.30241 5.39952 5.52769 5.53782 5.57166 5.59404 5.62588 5.71199 5.71850 5.81690 5.88265 5.89767 5.93559 5.99792 6.04514 6.08350 6.16241 6.24564 6.29630 6.34070 6.47494 6.52388 6.64699 6.83715 6.93623 7.41984 7.69940 8.17204 8.41471 9.52694 10.11135 10.45777 11.45033 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021874 B = 0.003286 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.758537 B = 8519.355695 C = 9460.477463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.104 4.104 4 C -0.141 4.141 5 C 0.513 3.487 6 O -0.551 6.551 7 N -0.610 5.610 8 C 0.105 3.895 9 C -0.127 4.127 10 C -0.088 4.088 11 H 0.072 0.928 12 C 0.156 3.844 13 N -0.732 5.732 14 C -0.236 4.236 15 H 0.070 0.930 16 C -0.015 4.015 17 N -0.934 5.934 18 Si 0.906 3.094 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.097 4.097 23 H 0.072 0.928 24 C -0.147 4.147 25 C 0.117 3.883 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.024 0.976 40 H 0.016 0.984 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.661 0.580 -5.707 19.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.142 4.142 4 C -0.181 4.181 5 C 0.302 3.698 6 O -0.429 6.429 7 N -0.343 5.343 8 C -0.017 4.017 9 C -0.165 4.165 10 C -0.107 4.107 11 H 0.090 0.910 12 C 0.029 3.971 13 N -0.376 5.376 14 C -0.367 4.367 15 H 0.088 0.912 16 C -0.211 4.211 17 N -0.583 5.583 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.117 4.117 23 H 0.090 0.910 24 C -0.204 4.204 25 C -0.005 4.005 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.042 0.958 40 H 0.034 0.966 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.977 1.110 -5.569 19.808 hybrid contribution 1.072 -0.367 0.464 1.225 sum -17.904 0.744 -5.104 18.633 Atomic orbital electron populations 1.21758 0.95790 1.01468 1.01947 1.21557 0.96053 0.96666 1.02078 1.21374 0.92844 0.96505 1.03463 1.21736 0.97884 0.94140 1.04351 1.20737 0.81715 0.91742 0.75583 1.90663 1.54923 1.46678 1.50642 1.48208 1.05563 1.07706 1.72797 1.21797 0.91018 0.89015 0.99916 1.21864 0.98473 0.98689 0.97462 1.21330 0.95311 0.93446 1.00644 0.91001 1.20757 0.88359 0.93646 0.94359 1.42387 1.22208 1.41781 1.31248 1.19274 0.98742 1.14992 1.03726 0.91245 1.24721 0.99002 0.98920 0.98451 1.69659 1.33296 1.24428 1.30962 0.86133 0.82386 0.77208 0.80580 1.20607 1.21901 1.21903 1.21453 0.95973 0.95768 0.98472 0.90998 1.21828 1.00586 0.95254 1.02782 1.21676 0.97729 0.82779 0.98360 0.92742 0.92818 0.92689 0.91979 0.91899 0.91308 0.91353 0.88970 0.88808 0.89885 0.91153 0.89228 0.91830 0.95806 0.96597 0.78331 0.93614 0.93029 0.91338 0.92523 0.91675 0.89349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.13 -0.95 5.93 -26.73 -0.16 -1.11 16 3 C -0.10 -0.98 4.50 -26.73 -0.12 -1.10 16 4 C -0.14 -1.34 4.05 -27.88 -0.11 -1.46 16 5 C 0.51 6.71 7.70 -10.98 -0.08 6.63 16 6 O -0.55 -9.01 15.39 5.56 0.09 -8.92 16 7 N -0.61 -7.65 2.98 -173.03 -0.52 -8.17 16 8 C 0.11 1.20 6.31 -3.93 -0.02 1.18 16 9 C -0.13 -1.81 5.23 -26.84 -0.14 -1.95 16 10 C -0.09 -1.36 1.74 -90.58 -0.16 -1.52 16 11 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 12 C 0.16 3.05 5.41 -4.04 -0.02 3.03 16 13 N -0.73 -17.99 5.32 -59.91 -0.32 -18.31 16 14 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 18 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 22 C -0.10 -1.29 2.41 -90.50 -0.22 -1.51 16 23 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 24 C -0.15 -1.81 8.82 37.16 0.33 -1.48 16 25 C 0.12 1.49 5.72 -3.71 -0.02 1.47 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.09 0.73 7.96 -51.93 -0.41 0.32 16 34 H 0.09 0.80 7.67 -51.93 -0.40 0.40 16 35 H 0.08 0.77 5.94 -51.93 -0.31 0.46 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.46 7.15 -51.92 -0.37 1.09 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.02 0.48 6.14 -51.93 -0.32 0.16 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.38 9.77 6.84 -40.82 -0.28 9.49 16 42 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.91 6.31 -51.93 -0.33 0.58 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 LS Contribution 364.04 15.07 5.49 5.49 Total: -1.00 -31.46 364.04 -8.84 -40.29 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -8.66 Total: 5.16 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -0.61 Total: -5.74 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.11 Total: -53.52 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.46 -8.84 -40.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183874455.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.061 kcal (2) G-P(sol) polarization free energy of solvation -31.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds