Wall clock time and date at job start Tue Mar 31 2020 05:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47466 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00011 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00369 * 180.02562 * 5 4 3 8 8 C 1.46925 * 120.62765 * 359.97438 * 7 5 4 9 9 C 1.53202 * 108.77226 * 126.37060 * 8 7 5 10 10 C 1.53040 * 109.31031 * 54.63723 * 9 8 7 11 11 H 1.08996 * 109.46233 * 58.65402 * 10 9 8 12 12 C 1.53002 * 109.45440 * 178.63010 * 10 9 8 13 13 N 1.46499 * 109.47154 * 294.99808 * 12 10 9 14 14 C 1.36930 * 120.00252 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99976 * 359.97438 * 14 13 12 16 16 C 1.38816 * 120.00332 * 179.97438 * 14 13 12 17 17 N 1.31615 * 119.99527 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99941 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47497 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.46845 * 120.00288 * 18 16 14 21 21 H 1.48502 * 109.47298 * 239.99900 * 18 16 14 22 22 C 1.53042 * 109.53725 * 298.62885 * 10 9 8 23 23 H 1.08995 * 109.49862 * 181.31804 * 22 10 9 24 24 C 1.52994 * 109.50181 * 301.38745 * 22 10 9 25 25 C 1.46924 * 120.63156 * 179.72355 * 7 5 4 26 26 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 27 27 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 29 29 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 30 30 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 31 31 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 32 32 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 33 33 H 1.09002 * 109.47153 * 300.00319 * 4 3 2 34 34 H 1.08998 * 109.47533 * 59.99948 * 4 3 2 35 35 H 1.08993 * 109.59194 * 246.15607 * 8 7 5 36 36 H 1.08995 * 109.58746 * 6.44405 * 8 7 5 37 37 H 1.09000 * 109.49272 * 174.58609 * 9 8 7 38 38 H 1.08998 * 109.49349 * 294.65121 * 9 8 7 39 39 H 1.08997 * 109.47650 * 54.99876 * 12 10 9 40 40 H 1.08997 * 109.46753 * 174.99999 * 12 10 9 41 41 H 0.97003 * 119.99592 * 359.97438 * 13 12 10 42 42 H 0.97003 * 119.99483 * 180.02562 * 17 16 14 43 43 H 1.09008 * 109.47336 * 59.99851 * 24 22 10 44 44 H 1.08997 * 109.47346 * 179.97438 * 24 22 10 45 45 H 1.08999 * 109.47156 * 300.00083 * 24 22 10 46 46 H 1.08998 * 109.58438 * 353.41476 * 25 7 5 47 47 H 1.08996 * 109.59050 * 113.84564 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2842 3.7852 0.0013 7 7 5.3974 3.1097 -0.0009 8 6 6.3643 2.0035 -0.0020 9 6 7.3355 2.1988 -1.1707 10 6 7.9700 3.5881 -1.0747 11 1 8.4906 3.6846 -0.1219 12 6 8.9661 3.7738 -2.2211 13 7 10.0749 2.8294 -2.0623 14 6 11.0949 2.8113 -2.9756 15 1 11.0819 3.4929 -3.8133 16 6 12.1457 1.9169 -2.8249 17 7 12.1613 1.0859 -1.8044 18 14 13.5368 1.8917 -4.0713 19 1 13.2840 2.9162 -5.1162 20 1 14.8204 2.1900 -3.3865 21 1 13.6125 0.5493 -4.7017 22 6 6.8786 4.6568 -1.1700 23 1 7.3335 5.6463 -1.1250 24 6 6.1250 4.5007 -2.4922 25 6 5.9023 4.4894 -0.0064 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6765 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.9337 0.9286 0.8891 34 1 3.9330 0.9289 -0.8908 35 1 6.9181 2.0012 0.9367 36 1 5.8365 1.0568 -0.1172 37 1 8.1156 1.4387 -1.1262 38 1 6.7940 2.1098 -2.1124 39 1 8.4651 3.5893 -3.1713 40 1 9.3520 4.7930 -2.2056 41 1 10.0867 2.2175 -1.3097 42 1 12.8958 0.4612 -1.6989 43 1 5.6693 3.5115 -2.5362 44 1 5.3476 5.2618 -2.5594 45 1 6.8209 4.6174 -3.3230 46 1 5.0698 5.1826 -0.1270 47 1 6.4177 4.6937 0.9320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183874464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:13 Heat of formation + Delta-G solvation = -55.342480 kcal Electronic energy + Delta-G solvation = -22981.889378 eV Core-core repulsion = 19777.655432 eV Total energy + Delta-G solvation = -3204.233945 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.43470 -38.20865 -35.54883 -34.92869 -33.41994 -31.85549 -30.60606 -30.30877 -27.07657 -26.83383 -24.60108 -23.53022 -22.96684 -21.56046 -21.15163 -19.65658 -18.25678 -17.30587 -16.79585 -16.19172 -15.74542 -15.19677 -14.95331 -14.47690 -14.06818 -13.93359 -13.84927 -13.69248 -13.60292 -13.03022 -12.78153 -12.63282 -12.44368 -12.37579 -12.16367 -11.58496 -11.53545 -11.50314 -11.24404 -11.15259 -11.04498 -10.92820 -10.79418 -10.77298 -10.33981 -10.22006 -10.15708 -9.95788 -9.66256 -9.64324 -8.87402 -8.54351 -6.91457 -5.78078 -3.05725 2.64140 3.01567 3.42119 3.48213 3.50104 4.39653 4.57960 4.64936 4.72681 4.81954 4.91928 5.01692 5.04785 5.10697 5.17403 5.26364 5.28704 5.39347 5.52380 5.54592 5.59362 5.59585 5.65456 5.71483 5.75758 5.81783 5.87803 5.88643 5.92766 6.04421 6.06602 6.09641 6.16255 6.23329 6.30297 6.38684 6.47262 6.52803 6.67854 6.82164 6.94559 7.43650 7.70021 8.18960 8.41545 9.52755 10.11232 10.45848 11.45052 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024821 B = 0.003259 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.820353 B = 8589.943213 C = 9235.745313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.104 4.104 4 C -0.142 4.142 5 C 0.514 3.486 6 O -0.550 6.550 7 N -0.606 5.606 8 C 0.105 3.895 9 C -0.128 4.128 10 C -0.088 4.088 11 H 0.071 0.929 12 C 0.158 3.842 13 N -0.732 5.732 14 C -0.236 4.236 15 H 0.070 0.930 16 C -0.015 4.015 17 N -0.934 5.934 18 Si 0.906 3.094 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.099 4.099 23 H 0.081 0.919 24 C -0.144 4.144 25 C 0.116 3.884 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.021 0.979 40 H 0.017 0.983 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.054 0.946 44 H 0.047 0.953 45 H 0.061 0.939 46 H 0.089 0.911 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.141 0.095 5.259 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.142 4.142 4 C -0.181 4.181 5 C 0.302 3.698 6 O -0.429 6.429 7 N -0.340 5.340 8 C -0.018 4.018 9 C -0.166 4.166 10 C -0.107 4.107 11 H 0.089 0.911 12 C 0.031 3.969 13 N -0.376 5.376 14 C -0.368 4.368 15 H 0.088 0.912 16 C -0.211 4.211 17 N -0.583 5.583 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.118 4.118 23 H 0.099 0.901 24 C -0.201 4.201 25 C -0.006 4.006 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.107 0.893 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.455 0.629 5.113 20.125 hybrid contribution 1.103 -0.333 -0.429 1.230 sum -18.351 0.296 4.684 18.942 Atomic orbital electron populations 1.21758 0.95795 1.01464 1.01943 1.21556 0.96048 0.96681 1.02068 1.21370 0.92859 0.96482 1.03450 1.21736 0.97872 0.94221 1.04312 1.20704 0.81734 0.91685 0.75634 1.90662 1.54912 1.46653 1.50637 1.48152 1.05507 1.07607 1.72697 1.21879 0.91025 0.89007 0.99867 1.21971 0.98478 0.98536 0.97602 1.21295 0.95153 0.93761 1.00484 0.91079 1.20715 0.88228 0.93342 0.94648 1.42390 1.22147 1.42157 1.30948 1.19276 0.98702 1.15194 1.03580 0.91248 1.24722 0.98997 0.98954 0.98424 1.69661 1.33222 1.24732 1.30721 0.86133 0.82390 0.77208 0.80569 1.20607 1.21906 1.21896 1.21404 0.95575 0.99794 0.95070 0.90108 1.21853 0.99743 1.01506 0.97007 1.21572 0.97851 0.83016 0.98152 0.92690 0.92825 0.92747 0.91910 0.91988 0.91312 0.91371 0.89021 0.88852 0.91184 0.89938 0.89424 0.91387 0.96085 0.96522 0.78322 0.93617 0.92676 0.93387 0.91996 0.89294 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.13 -0.94 5.93 -26.73 -0.16 -1.10 16 3 C -0.10 -0.97 4.50 -26.73 -0.12 -1.09 16 4 C -0.14 -1.33 4.05 -27.89 -0.11 -1.45 16 5 C 0.51 6.59 7.70 -10.99 -0.08 6.51 16 6 O -0.55 -8.86 15.40 5.56 0.09 -8.78 16 7 N -0.61 -7.42 2.42 -173.01 -0.42 -7.84 16 8 C 0.10 1.18 6.35 -3.71 -0.02 1.16 16 9 C -0.13 -1.80 4.90 -26.61 -0.13 -1.93 16 10 C -0.09 -1.34 1.96 -90.58 -0.18 -1.52 16 11 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 12 C 0.16 3.08 5.18 -4.04 -0.02 3.06 16 13 N -0.73 -18.00 5.32 -59.91 -0.32 -18.32 16 14 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 18 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 C -0.10 -1.29 2.71 -90.70 -0.25 -1.54 16 23 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 24 C -0.14 -1.91 8.38 37.15 0.31 -1.60 16 25 C 0.12 1.46 5.79 -3.91 -0.02 1.43 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.09 0.72 7.94 -51.93 -0.41 0.31 16 34 H 0.09 0.79 7.69 -51.93 -0.40 0.39 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.76 5.93 -51.93 -0.31 0.45 16 37 H 0.09 1.42 7.15 -51.93 -0.37 1.05 16 38 H 0.07 0.98 6.34 -51.93 -0.33 0.65 16 39 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.38 9.77 6.85 -40.82 -0.28 9.49 16 42 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.05 0.76 5.98 -51.92 -0.31 0.45 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.85 6.58 -51.93 -0.34 0.51 16 46 H 0.09 1.19 7.01 -51.93 -0.36 0.83 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 360.03 15.07 5.43 5.43 Total: -1.00 -31.37 360.03 -8.69 -40.07 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -8.50 Total: 5.25 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -0.66 Total: -6.00 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.01 Total: -53.21 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.37 -8.69 -40.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183874464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.275 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds