Wall clock time and date at job start Tue Mar 31 2020 06:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 109.46997 * 2 1 4 4 C 1.52991 * 109.47133 * 185.96550 * 3 2 1 5 5 H 1.09005 * 109.47597 * 53.24245 * 4 3 2 6 6 C 1.50699 * 109.47478 * 173.24405 * 4 3 2 7 7 O 1.21280 * 119.99550 * 15.93799 * 6 4 3 8 8 N 1.34770 * 120.00516 * 195.66962 * 6 4 3 9 9 C 1.47032 * 125.64792 * 354.42704 * 8 6 4 10 10 C 1.54314 * 107.27152 * 181.02426 * 9 8 6 11 11 C 1.55159 * 102.94506 * 22.19251 * 10 9 8 12 12 H 1.09000 * 111.00147 * 82.60859 * 11 10 9 13 13 N 1.46504 * 111.00303 * 206.42339 * 11 10 9 14 14 C 1.36937 * 120.00256 * 273.54275 * 13 11 10 15 15 H 1.08004 * 119.99552 * 0.02562 * 14 13 11 16 16 C 1.38806 * 120.00124 * 180.02562 * 14 13 11 17 17 N 1.31614 * 120.00299 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99973 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47290 * 59.99766 * 18 16 14 20 20 H 1.48500 * 109.46925 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46610 * 299.99835 * 18 16 14 22 22 C 1.47427 * 125.65026 * 174.12068 * 8 6 4 23 23 C 1.53006 * 109.47340 * 293.24102 * 4 3 2 24 24 C 1.52998 * 109.46934 * 327.31609 * 23 4 3 25 25 C 1.53007 * 109.46930 * 87.31387 * 23 4 3 26 26 H 1.08998 * 109.46975 * 60.00177 * 1 2 3 27 27 H 1.09002 * 109.46942 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46948 * 300.00017 * 1 2 3 29 29 H 1.08995 * 109.46948 * 239.99983 * 2 1 3 30 30 H 1.08998 * 109.46975 * 119.99822 * 2 1 3 31 31 H 1.09006 * 109.47038 * 65.96266 * 3 2 1 32 32 H 1.09000 * 109.47122 * 305.96461 * 3 2 1 33 33 H 1.08998 * 109.88093 * 300.44375 * 9 8 6 34 34 H 1.08997 * 109.87799 * 61.44933 * 9 8 6 35 35 H 1.09001 * 110.72304 * 140.55917 * 10 9 8 36 36 H 1.09000 * 110.72159 * 263.82720 * 10 9 8 37 37 H 0.97000 * 119.99575 * 93.54960 * 13 11 10 38 38 H 0.96995 * 120.00720 * 179.97438 * 17 16 14 39 39 H 1.09007 * 110.36763 * 274.74226 * 22 8 6 40 40 H 1.08997 * 110.36697 * 37.06576 * 22 8 6 41 41 H 1.08995 * 109.47523 * 207.31090 * 23 4 3 42 42 H 1.09001 * 109.47292 * 66.50421 * 24 23 4 43 43 H 1.09003 * 109.47179 * 186.49739 * 24 23 4 44 44 H 1.08996 * 109.47132 * 306.50000 * 24 23 4 45 45 H 1.08997 * 109.46979 * 62.43179 * 25 23 4 46 46 H 1.08996 * 109.47116 * 182.43928 * 25 23 4 47 47 H 1.09001 * 109.46738 * 302.43811 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5626 1.4452 -0.1499 5 1 3.8426 0.8597 -1.0257 6 6 4.0486 2.8619 -0.3165 7 8 3.3213 3.7898 -0.0320 8 7 5.2932 3.0977 -0.7765 9 6 6.3163 2.0759 -1.0428 10 6 7.5830 2.8114 -1.5284 11 6 7.3878 4.2457 -0.9697 12 1 7.7036 4.3055 0.0718 13 7 8.0999 5.2297 -1.7888 14 6 9.4182 5.5032 -1.5389 15 1 9.9331 4.9932 -0.7382 16 6 10.0927 6.4360 -2.3147 17 7 9.4653 7.0572 -3.2908 18 14 11.8912 6.8086 -1.9742 19 1 12.6917 5.5674 -2.1286 20 1 12.3749 7.8329 -2.9344 21 1 12.0365 7.3221 -0.5883 22 6 5.8523 4.4225 -1.1020 23 6 4.1992 0.8312 1.0987 24 6 3.3397 1.1568 2.3218 25 6 4.2920 -0.6867 0.9300 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.7665 1.9246 0.9386 32 1 1.5922 1.9862 -0.8318 33 1 6.5356 1.5239 -0.1288 34 1 5.9640 1.3908 -1.8138 35 1 8.4793 2.3532 -1.1102 36 1 7.6277 2.8245 -2.6174 37 1 7.6374 5.6876 -2.5081 38 1 9.9365 7.7092 -3.8327 39 1 5.5872 4.7063 -2.1206 40 1 5.4944 5.1697 -0.3938 41 1 5.1988 1.2432 1.2369 42 1 2.3791 0.6486 2.2367 43 1 3.8499 0.8204 3.2244 44 1 3.1777 2.2333 2.3759 45 1 4.9393 -0.9193 0.0845 46 1 4.7054 -1.1284 1.8366 47 1 3.2971 -1.0935 0.7486 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186010440.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:51 Heat of formation + Delta-G solvation = -40.438469 kcal Electronic energy + Delta-G solvation = -23236.484649 eV Core-core repulsion = 20032.896990 eV Total energy + Delta-G solvation = -3203.587659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.36490 -38.03854 -36.77436 -34.16927 -33.40623 -31.51804 -29.77923 -29.44308 -27.89166 -27.34556 -25.31817 -23.54644 -22.76170 -21.39744 -20.20449 -20.07227 -18.73538 -17.31645 -16.83600 -16.45992 -15.72366 -15.45594 -14.60128 -14.36679 -14.20818 -13.88804 -13.49531 -13.36908 -13.22173 -13.09447 -12.75361 -12.65340 -12.49891 -12.16666 -11.99122 -11.81152 -11.71101 -11.57708 -11.23637 -11.16067 -11.08677 -11.01711 -10.84389 -10.69422 -10.64375 -10.33267 -10.15657 -10.07130 -9.77213 -9.46219 -8.96524 -8.36487 -7.05874 -5.83148 -3.13851 2.80409 3.18056 3.40662 3.45497 3.46389 4.46635 4.52757 4.54040 4.63289 4.84304 4.90630 4.99676 5.02204 5.06840 5.25290 5.30433 5.36115 5.40351 5.46396 5.49533 5.57654 5.58070 5.65270 5.65969 5.71959 5.75725 5.76608 5.82456 5.89650 5.97447 5.99252 6.05005 6.12459 6.14447 6.25262 6.27214 6.34141 6.38152 6.56879 6.62601 6.91201 7.63765 7.77932 8.33901 8.37314 9.45757 9.99945 10.34960 11.39053 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035897 B = 0.003270 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.820090 B = 8561.331234 C = 8866.215498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.133 4.133 3 C -0.104 4.104 4 C -0.099 4.099 5 H 0.091 0.909 6 C 0.530 3.470 7 O -0.546 6.546 8 N -0.614 5.614 9 C 0.101 3.899 10 C -0.155 4.155 11 C 0.172 3.828 12 H 0.062 0.938 13 N -0.715 5.715 14 C -0.245 4.245 15 H 0.072 0.928 16 C -0.010 4.010 17 N -0.931 5.931 18 Si 0.909 3.091 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.098 3.902 23 C -0.086 4.086 24 C -0.153 4.153 25 C -0.160 4.160 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.386 0.614 38 H 0.257 0.743 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.571 -17.584 7.330 23.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.170 4.170 3 C -0.142 4.142 4 C -0.120 4.120 5 H 0.109 0.891 6 C 0.318 3.682 7 O -0.424 6.424 8 N -0.347 5.347 9 C -0.022 4.022 10 C -0.196 4.196 11 C 0.060 3.940 12 H 0.080 0.920 13 N -0.356 5.356 14 C -0.376 4.376 15 H 0.089 0.911 16 C -0.206 4.206 17 N -0.578 5.578 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C -0.025 4.025 23 C -0.105 4.105 24 C -0.210 4.210 25 C -0.217 4.217 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.221 0.779 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.846 -17.042 7.552 23.220 hybrid contribution 1.039 0.345 -0.291 1.132 sum -12.807 -16.697 7.261 22.261 Atomic orbital electron populations 1.21785 0.95982 1.01321 1.01960 1.21901 0.95757 0.97009 1.02313 1.21556 0.92361 0.96549 1.03741 1.21436 0.97386 0.93246 0.99965 0.89067 1.20310 0.80090 0.91315 0.76452 1.90676 1.55145 1.46112 1.50424 1.48472 1.12330 1.09327 1.64621 1.22133 0.89050 0.91173 0.99836 1.23415 0.94961 0.99169 1.02101 1.21335 0.88574 0.88646 0.95412 0.91963 1.42253 1.09708 1.45898 1.37708 1.19160 0.86677 1.18570 1.13157 0.91052 1.24768 0.98409 0.99247 0.98210 1.69646 1.36176 1.30054 1.21945 0.86245 0.84763 0.77665 0.77345 1.21179 1.21642 1.21171 1.22562 0.94865 0.84241 1.00836 1.21057 0.99670 0.96056 0.93718 1.22032 0.99984 1.02239 0.96739 1.22210 1.02866 0.94776 1.01838 0.92771 0.92932 0.92737 0.92055 0.90629 0.90273 0.91703 0.91810 0.92187 0.90776 0.90572 0.77947 0.93289 0.91428 0.90609 0.90708 0.91733 0.92886 0.92109 0.92537 0.92533 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.13 -1.04 4.30 -26.73 -0.11 -1.16 16 3 C -0.10 -1.09 3.48 -26.74 -0.09 -1.19 16 4 C -0.10 -1.10 1.54 -91.77 -0.14 -1.24 16 5 H 0.09 0.92 7.48 -51.93 -0.39 0.53 16 6 C 0.53 8.18 6.88 -10.99 -0.08 8.10 16 7 O -0.55 -10.37 16.34 5.56 0.09 -10.28 16 8 N -0.61 -9.52 3.32 -170.38 -0.57 -10.09 16 9 C 0.10 1.33 6.08 -3.06 -0.02 1.32 16 10 C -0.16 -2.52 6.64 -24.90 -0.17 -2.68 16 11 C 0.17 3.34 3.70 -65.66 -0.24 3.10 16 12 H 0.06 1.24 8.13 -51.93 -0.42 0.81 16 13 N -0.72 -17.45 5.28 -51.23 -0.27 -17.72 16 14 C -0.24 -6.60 9.98 -15.06 -0.15 -6.75 16 15 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 16 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 17 N -0.93 -27.66 13.06 55.49 0.72 -26.93 16 18 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.10 1.77 6.56 -2.41 -0.02 1.75 16 23 C -0.09 -0.83 2.42 -90.61 -0.22 -1.05 16 24 C -0.15 -1.45 7.75 37.16 0.29 -1.17 16 25 C -0.16 -1.19 8.80 37.16 0.33 -0.87 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 30 H 0.08 0.54 4.11 -51.93 -0.21 0.32 16 31 H 0.08 0.90 5.89 -51.93 -0.31 0.59 16 32 H 0.06 0.77 8.12 -51.93 -0.42 0.34 16 33 H 0.06 0.73 6.51 -51.93 -0.34 0.40 16 34 H 0.06 0.69 7.93 -51.93 -0.41 0.28 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.39 10.06 7.71 -40.82 -0.31 9.75 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 39 H 0.07 1.26 8.00 -51.92 -0.42 0.84 16 40 H 0.08 1.45 7.98 -51.93 -0.41 1.04 16 41 H 0.07 0.81 6.08 -51.93 -0.32 0.49 16 42 H 0.06 0.54 5.21 -51.93 -0.27 0.27 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.70 7.73 -51.93 -0.40 0.30 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.48 4.49 -51.93 -0.23 0.24 16 LS Contribution 357.22 15.07 5.38 5.38 Total: -1.00 -30.61 357.22 -8.23 -38.84 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -8.22 Total: 6.83 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.35 Total: -2.96 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -0.11 Total: -54.74 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.61 -8.23 -38.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186010440.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.600 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds