Wall clock time and date at job start Tue Mar 31 2020 06:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 109.46997 * 2 1 4 4 C 1.52991 * 109.47133 * 185.96550 * 3 2 1 5 5 H 1.09005 * 109.47597 * 53.24245 * 4 3 2 6 6 C 1.50699 * 109.47478 * 173.24405 * 4 3 2 7 7 O 1.21280 * 119.99550 * 15.93799 * 6 4 3 8 8 N 1.34770 * 120.00516 * 195.66962 * 6 4 3 9 9 C 1.47032 * 125.64792 * 354.42704 * 8 6 4 10 10 C 1.54314 * 107.27152 * 181.02426 * 9 8 6 11 11 C 1.55159 * 102.94506 * 22.19251 * 10 9 8 12 12 H 1.09000 * 111.00147 * 82.60859 * 11 10 9 13 13 N 1.46504 * 111.00303 * 206.42339 * 11 10 9 14 14 C 1.36937 * 120.00256 * 273.54275 * 13 11 10 15 15 H 1.08004 * 119.99552 * 0.02562 * 14 13 11 16 16 C 1.38806 * 120.00124 * 180.02562 * 14 13 11 17 17 N 1.31614 * 120.00299 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99973 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47290 * 59.99766 * 18 16 14 20 20 H 1.48500 * 109.46925 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46610 * 299.99835 * 18 16 14 22 22 C 1.47427 * 125.65026 * 174.12068 * 8 6 4 23 23 C 1.53006 * 109.47340 * 293.24102 * 4 3 2 24 24 C 1.52998 * 109.46934 * 327.31609 * 23 4 3 25 25 C 1.53007 * 109.46930 * 87.31387 * 23 4 3 26 26 H 1.08998 * 109.46975 * 60.00177 * 1 2 3 27 27 H 1.09002 * 109.46942 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46948 * 300.00017 * 1 2 3 29 29 H 1.08995 * 109.46948 * 239.99983 * 2 1 3 30 30 H 1.08998 * 109.46975 * 119.99822 * 2 1 3 31 31 H 1.09006 * 109.47038 * 65.96266 * 3 2 1 32 32 H 1.09000 * 109.47122 * 305.96461 * 3 2 1 33 33 H 1.08998 * 109.88093 * 300.44375 * 9 8 6 34 34 H 1.08997 * 109.87799 * 61.44933 * 9 8 6 35 35 H 1.09001 * 110.72304 * 140.55917 * 10 9 8 36 36 H 1.09000 * 110.72159 * 263.82720 * 10 9 8 37 37 H 0.97000 * 119.99575 * 93.54960 * 13 11 10 38 38 H 0.96995 * 120.00720 * 179.97438 * 17 16 14 39 39 H 1.09007 * 110.36763 * 274.74226 * 22 8 6 40 40 H 1.08997 * 110.36697 * 37.06576 * 22 8 6 41 41 H 1.08995 * 109.47523 * 207.31090 * 23 4 3 42 42 H 1.09001 * 109.47292 * 66.50421 * 24 23 4 43 43 H 1.09003 * 109.47179 * 186.49739 * 24 23 4 44 44 H 1.08996 * 109.47132 * 306.50000 * 24 23 4 45 45 H 1.08997 * 109.46979 * 62.43179 * 25 23 4 46 46 H 1.08996 * 109.47116 * 182.43928 * 25 23 4 47 47 H 1.09001 * 109.46738 * 302.43811 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5626 1.4452 -0.1499 5 1 3.8426 0.8597 -1.0257 6 6 4.0486 2.8619 -0.3165 7 8 3.3213 3.7898 -0.0320 8 7 5.2932 3.0977 -0.7765 9 6 6.3163 2.0759 -1.0428 10 6 7.5830 2.8114 -1.5284 11 6 7.3878 4.2457 -0.9697 12 1 7.7036 4.3055 0.0718 13 7 8.0999 5.2297 -1.7888 14 6 9.4182 5.5032 -1.5389 15 1 9.9331 4.9932 -0.7382 16 6 10.0927 6.4360 -2.3147 17 7 9.4653 7.0572 -3.2908 18 14 11.8912 6.8086 -1.9742 19 1 12.6917 5.5674 -2.1286 20 1 12.3749 7.8329 -2.9344 21 1 12.0365 7.3221 -0.5883 22 6 5.8523 4.4225 -1.1020 23 6 4.1992 0.8312 1.0987 24 6 3.3397 1.1568 2.3218 25 6 4.2920 -0.6867 0.9300 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.7665 1.9246 0.9386 32 1 1.5922 1.9862 -0.8318 33 1 6.5356 1.5239 -0.1288 34 1 5.9640 1.3908 -1.8138 35 1 8.4793 2.3532 -1.1102 36 1 7.6277 2.8245 -2.6174 37 1 7.6374 5.6876 -2.5081 38 1 9.9365 7.7092 -3.8327 39 1 5.5872 4.7063 -2.1206 40 1 5.4944 5.1697 -0.3938 41 1 5.1988 1.2432 1.2369 42 1 2.3791 0.6486 2.2367 43 1 3.8499 0.8204 3.2244 44 1 3.1777 2.2333 2.3759 45 1 4.9393 -0.9193 0.0845 46 1 4.7054 -1.1284 1.8366 47 1 3.2971 -1.0935 0.7486 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186010440.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:50 Heat of formation + Delta-G solvation = -58.694516 kcal Electronic energy + Delta-G solvation = -23237.276290 eV Core-core repulsion = 20032.896990 eV Total energy + Delta-G solvation = -3204.379300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.52590 -39.22464 -37.96508 -35.95268 -34.13583 -33.27723 -31.13958 -30.51957 -29.25936 -28.09920 -26.40511 -25.27724 -24.04588 -22.08601 -21.63840 -21.15336 -19.82114 -19.29266 -18.05329 -17.43537 -17.02336 -16.63192 -16.27617 -15.55730 -15.33863 -15.13288 -14.73030 -14.55309 -14.43648 -14.16886 -13.83683 -13.71843 -13.40410 -13.25309 -13.12871 -13.02284 -12.93423 -12.67161 -12.48110 -12.43025 -12.33737 -12.16308 -12.04932 -11.83455 -11.76206 -11.72022 -11.63150 -11.37648 -10.94272 -10.85804 -10.68368 -9.67070 -9.06426 -7.95844 -5.26480 1.48513 1.51519 1.57437 1.59098 1.93747 2.56603 3.33497 3.46827 3.70425 3.72502 3.81992 3.88622 4.04953 4.16982 4.18735 4.24348 4.29349 4.33922 4.37602 4.49803 4.60386 4.62870 4.68769 4.78466 4.83188 4.85722 4.91671 4.96584 5.00109 5.08987 5.10782 5.12849 5.21165 5.22689 5.25598 5.34159 5.37333 5.41032 5.43698 5.52585 5.56491 5.66613 6.24506 6.54922 7.12655 7.31205 8.02305 8.26851 9.27375 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035897 B = 0.003270 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.820090 B = 8561.331234 C = 8866.215498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.102 4.102 4 C -0.090 4.090 5 H 0.112 0.888 6 C 0.523 3.477 7 O -0.590 6.590 8 N -0.614 5.614 9 C 0.108 3.892 10 C -0.144 4.144 11 C 0.166 3.834 12 H 0.059 0.941 13 N -0.730 5.730 14 C -0.242 4.242 15 H 0.081 0.919 16 C -0.074 4.074 17 N -0.970 5.970 18 Si 0.975 3.025 19 H -0.274 1.274 20 H -0.298 1.298 21 H -0.279 1.279 22 C 0.106 3.894 23 C -0.083 4.083 24 C -0.152 4.152 25 C -0.155 4.155 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.374 0.626 38 H 0.252 0.748 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.030 0.970 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.284 -20.995 8.218 26.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.140 4.140 4 C -0.111 4.111 5 H 0.130 0.870 6 C 0.314 3.686 7 O -0.471 6.471 8 N -0.347 5.347 9 C -0.014 4.014 10 C -0.184 4.184 11 C 0.056 3.944 12 H 0.077 0.923 13 N -0.369 5.369 14 C -0.373 4.373 15 H 0.099 0.901 16 C -0.266 4.266 17 N -0.620 5.620 18 Si 0.804 3.196 19 H -0.199 1.199 20 H -0.224 1.224 21 H -0.205 1.205 22 C -0.018 4.018 23 C -0.102 4.102 24 C -0.209 4.209 25 C -0.212 4.212 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.206 0.794 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.049 0.951 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.562 -20.524 8.478 26.020 hybrid contribution 0.864 1.415 -0.507 1.733 sum -12.698 -19.110 7.971 24.289 Atomic orbital electron populations 1.21802 0.95755 1.02162 1.01503 1.21869 0.95932 0.94916 1.03493 1.21536 0.91955 0.98291 1.02215 1.21510 0.97677 0.90149 1.01719 0.86982 1.21241 0.79359 0.92864 0.75144 1.90655 1.56252 1.47940 1.52208 1.48562 1.13044 1.08604 1.64533 1.22251 0.86745 0.90429 1.01994 1.23205 0.97241 0.96762 1.01241 1.21476 0.88737 0.89591 0.94583 0.92350 1.42407 1.09354 1.47153 1.38027 1.19565 0.87681 1.17608 1.12470 0.90132 1.25591 1.02590 0.99860 0.98597 1.69813 1.37682 1.31149 1.23390 0.85195 0.80006 0.77466 0.76977 1.19940 1.22443 1.20535 1.22241 0.94218 0.85663 0.99668 1.21067 0.98760 0.97807 0.92586 1.22024 1.00949 1.00447 0.97437 1.22184 1.03875 0.92344 1.02784 0.93494 0.91389 0.93073 0.90877 0.89271 0.91653 0.93669 0.89091 0.89233 0.89624 0.91802 0.79423 0.93975 0.92512 0.92614 0.91669 0.90441 0.91770 0.95059 0.91543 0.91632 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.99 0.71 -1.25 16 2 C -0.13 -1.61 4.30 30.60 0.13 -1.48 16 3 C -0.10 -2.02 3.48 30.59 0.11 -1.91 16 4 C -0.09 -1.81 1.54 -11.54 -0.02 -1.82 16 5 H 0.11 1.83 7.48 -2.38 -0.02 1.81 16 6 C 0.52 15.93 6.88 87.66 0.60 16.53 16 7 O -0.59 -23.15 16.34 -3.03 -0.05 -23.20 16 8 N -0.61 -18.54 3.32 -811.35 -2.70 -21.24 16 9 C 0.11 2.52 6.08 86.72 0.53 3.05 16 10 C -0.14 -4.41 6.64 31.78 0.21 -4.20 16 11 C 0.17 6.45 3.70 46.46 0.17 6.62 16 12 H 0.06 2.31 8.13 -2.39 -0.02 2.29 16 13 N -0.73 -36.29 5.28 -316.00 -1.67 -37.95 16 14 C -0.24 -13.08 9.98 84.03 0.84 -12.24 16 15 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 16 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 17 N -0.97 -59.06 13.06 21.65 0.28 -58.77 16 18 Si 0.97 45.35 29.55 68.60 2.03 47.37 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 20 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 22 C 0.11 3.94 6.56 86.93 0.57 4.51 16 23 C -0.08 -1.37 2.42 -10.79 -0.03 -1.40 16 24 C -0.15 -2.62 7.75 71.98 0.56 -2.07 16 25 C -0.16 -1.63 8.80 71.98 0.63 -0.99 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.81 8.13 -2.39 -0.02 0.79 16 30 H 0.09 0.92 4.11 -2.39 -0.01 0.91 16 31 H 0.06 1.47 5.89 -2.38 -0.01 1.46 16 32 H 0.04 1.06 8.12 -2.39 -0.02 1.04 16 33 H 0.09 1.72 6.51 -2.39 -0.02 1.70 16 34 H 0.09 1.66 7.93 -2.39 -0.02 1.64 16 35 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.37 20.20 7.71 -92.71 -0.71 19.49 16 38 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 39 H 0.06 2.21 8.00 -2.38 -0.02 2.19 16 40 H 0.06 2.25 7.98 -2.39 -0.02 2.23 16 41 H 0.06 1.22 6.08 -2.39 -0.01 1.20 16 42 H 0.08 1.11 5.21 -2.39 -0.01 1.10 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.03 0.72 7.73 -2.39 -0.02 0.70 16 45 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.08 0.70 4.49 -2.39 -0.01 0.69 16 Total: -1.00 -68.31 357.22 3.61 -64.70 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.23 Total: 29.47 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 5.49 Total: -0.37 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -4.08 Total: -117.97 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.05 Total: -23.20 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -68.31 3.61 -64.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186010440.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.006 kcal (2) G-P(sol) polarization free energy of solvation -68.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds