Wall clock time and date at job start Tue Mar 31 2020 06:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46754 * 2 1 4 4 C 1.53000 * 109.47012 * 181.81794 * 3 2 1 5 5 H 1.09002 * 109.46829 * 322.36191 * 4 3 2 6 6 C 1.50704 * 109.47162 * 202.36559 * 4 3 2 7 7 O 1.21275 * 120.00141 * 332.80544 * 6 4 3 8 8 N 1.34779 * 119.99954 * 152.80085 * 6 4 3 9 9 C 1.47019 * 125.64704 * 5.14334 * 8 6 4 10 10 C 1.54321 * 107.26974 * 181.01843 * 9 8 6 11 11 C 1.55156 * 102.94311 * 22.19608 * 10 9 8 12 12 H 1.08997 * 111.00510 * 82.60546 * 11 10 9 13 13 N 1.46497 * 111.00709 * 206.42364 * 11 10 9 14 14 C 1.36938 * 119.99948 * 273.54687 * 13 11 10 15 15 H 1.07995 * 120.00088 * 359.97438 * 14 13 11 16 16 C 1.38814 * 120.00022 * 179.97438 * 14 13 11 17 17 N 1.31622 * 120.00053 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99932 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47288 * 59.99510 * 18 16 14 20 20 H 1.48504 * 109.46996 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46645 * 299.99741 * 18 16 14 22 22 C 1.47419 * 125.64581 * 184.83238 * 8 6 4 23 23 C 1.52997 * 109.47473 * 82.36340 * 4 3 2 24 24 C 1.52992 * 109.47221 * 299.24841 * 23 4 3 25 25 C 1.53005 * 109.47057 * 59.25005 * 23 4 3 26 26 H 1.09000 * 109.47148 * 300.00062 * 1 2 3 27 27 H 1.09004 * 109.46636 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46665 * 60.00706 * 1 2 3 29 29 H 1.09004 * 109.46765 * 119.99304 * 2 1 3 30 30 H 1.09000 * 109.47148 * 239.99938 * 2 1 3 31 31 H 1.09001 * 109.47351 * 301.81033 * 3 2 1 32 32 H 1.08998 * 109.47535 * 61.81198 * 3 2 1 33 33 H 1.08997 * 109.88725 * 300.43561 * 9 8 6 34 34 H 1.08999 * 109.88326 * 61.60897 * 9 8 6 35 35 H 1.09006 * 110.72300 * 140.55530 * 10 9 8 36 36 H 1.08998 * 110.72426 * 263.83027 * 10 9 8 37 37 H 0.96998 * 120.00211 * 93.54033 * 13 11 10 38 38 H 0.97000 * 119.99447 * 180.02562 * 17 16 14 39 39 H 1.09001 * 110.36702 * 274.74819 * 22 8 6 40 40 H 1.08997 * 110.37288 * 37.07630 * 22 8 6 41 41 H 1.09000 * 109.47033 * 179.24629 * 23 4 3 42 42 H 1.09009 * 109.47373 * 75.27760 * 24 23 4 43 43 H 1.09003 * 109.47096 * 195.27108 * 24 23 4 44 44 H 1.08997 * 109.47442 * 315.27678 * 24 23 4 45 45 H 1.08997 * 109.47376 * 62.42853 * 25 23 4 46 46 H 1.08994 * 109.47486 * 182.43336 * 25 23 4 47 47 H 1.09003 * 109.46533 * 302.43213 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5693 1.4428 -0.0458 5 1 3.9511 0.6225 0.5620 6 6 4.0878 2.7511 0.4935 7 8 3.4064 3.7514 0.4166 8 7 5.3087 2.8095 1.0613 9 6 6.2778 1.7057 1.1247 10 6 7.5155 2.2259 1.8857 11 6 6.9467 3.4168 2.7016 12 1 6.4763 3.0706 3.6219 13 7 7.9908 4.4037 2.9878 14 6 8.7867 4.2575 4.0925 15 1 8.6444 3.4150 4.7529 16 6 9.7765 5.1923 4.3635 17 7 9.9503 6.2190 3.5583 18 14 10.8627 4.9926 5.8701 19 1 11.5988 3.7058 5.7826 20 1 11.8336 6.1145 5.9326 21 1 10.0194 4.9983 7.0924 22 6 5.8960 3.9926 1.7161 23 6 4.0364 1.2664 -1.4920 24 6 3.5258 -0.0704 -2.0333 25 6 3.4849 2.4077 -2.3489 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5137 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.6504 1.9657 -0.8733 32 1 1.7034 1.9469 0.9057 33 1 5.8429 0.8606 1.6582 34 1 6.5623 1.4039 0.1167 35 1 7.9111 1.4574 2.5499 36 1 8.2815 2.5666 1.1891 37 1 8.1185 5.1606 2.3948 38 1 10.6422 6.8719 3.7475 39 1 6.3766 4.6350 0.9782 40 1 5.1296 4.5451 2.2596 41 1 5.1257 1.2800 -1.5262 42 1 2.4614 0.0098 -2.2545 43 1 4.0680 -0.3244 -2.9442 44 1 3.6841 -0.8489 -1.2871 45 1 3.8830 3.3568 -1.9898 46 1 3.7816 2.2588 -3.3870 47 1 2.3971 2.4207 -2.2801 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186010441.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:57 Heat of formation + Delta-G solvation = -40.165553 kcal Electronic energy + Delta-G solvation = -23197.038613 eV Core-core repulsion = 19993.462789 eV Total energy + Delta-G solvation = -3203.575824 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.34153 -38.01734 -36.64793 -34.14391 -33.55643 -31.53334 -29.75715 -29.45084 -27.74694 -27.48598 -25.23434 -23.55267 -22.77246 -21.40806 -20.37060 -19.99969 -18.53829 -17.33635 -16.85500 -16.54967 -15.92693 -15.05440 -14.68777 -14.34398 -14.25250 -13.82070 -13.53203 -13.36428 -13.21728 -13.05697 -12.83955 -12.62642 -12.47909 -12.06600 -12.03837 -11.90919 -11.79383 -11.55593 -11.30672 -11.15414 -11.05090 -10.95085 -10.84458 -10.70233 -10.51354 -10.32050 -10.17070 -10.08357 -9.77549 -9.45426 -8.96641 -8.36527 -7.05993 -5.83298 -3.14004 2.80907 3.18600 3.40590 3.45412 3.46334 4.48470 4.51173 4.53926 4.62419 4.86629 4.93577 5.01469 5.05336 5.06367 5.26321 5.29239 5.36865 5.39038 5.47169 5.50245 5.57071 5.59241 5.61439 5.68696 5.72741 5.76267 5.81036 5.81617 5.89237 5.95432 5.98807 6.09988 6.12883 6.15487 6.22490 6.25285 6.37701 6.40511 6.57073 6.61931 6.90961 7.63650 7.78342 8.33878 8.38258 9.45627 9.99845 10.34809 11.38875 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032407 B = 0.003242 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.796273 B = 8635.068765 C = 8727.390728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.145 4.145 3 C -0.105 4.105 4 C -0.099 4.099 5 H 0.089 0.911 6 C 0.531 3.469 7 O -0.544 6.544 8 N -0.614 5.614 9 C 0.102 3.898 10 C -0.155 4.155 11 C 0.172 3.828 12 H 0.063 0.937 13 N -0.715 5.715 14 C -0.245 4.245 15 H 0.072 0.928 16 C -0.010 4.010 17 N -0.931 5.931 18 Si 0.909 3.091 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.099 3.901 23 C -0.083 4.083 24 C -0.149 4.149 25 C -0.153 4.153 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.386 0.614 38 H 0.257 0.743 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.327 -14.825 -10.733 23.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.182 4.182 3 C -0.142 4.142 4 C -0.121 4.121 5 H 0.107 0.893 6 C 0.320 3.680 7 O -0.422 6.422 8 N -0.348 5.348 9 C -0.021 4.021 10 C -0.196 4.196 11 C 0.060 3.940 12 H 0.080 0.920 13 N -0.356 5.356 14 C -0.376 4.376 15 H 0.090 0.910 16 C -0.206 4.206 17 N -0.578 5.578 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C -0.024 4.024 23 C -0.102 4.102 24 C -0.206 4.206 25 C -0.210 4.210 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.221 0.779 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.658 -14.297 -10.632 23.072 hybrid contribution 0.886 0.131 0.697 1.135 sum -13.772 -14.167 -9.935 22.115 Atomic orbital electron populations 1.21757 0.96048 1.01272 1.01829 1.22093 0.95934 0.97055 1.03148 1.21563 0.92311 0.96786 1.03567 1.21426 0.97641 0.95523 0.97475 0.89276 1.20273 0.79785 0.90677 0.77311 1.90677 1.57057 1.37138 1.57319 1.48513 1.15194 1.14293 1.56765 1.22099 0.90191 0.89648 1.00204 1.23416 0.95722 1.00776 0.99725 1.21339 0.88720 0.89578 0.94361 0.91953 1.42253 1.36587 1.26966 1.29753 1.19162 1.10046 1.07153 1.01245 0.91042 1.24775 0.99649 0.97215 0.98995 1.69656 1.35656 1.14061 1.38427 0.86242 0.80206 0.76971 0.82583 1.21182 1.21643 1.21161 1.22549 0.96542 0.87707 0.95587 1.20995 1.00484 0.96061 0.92647 1.22125 1.01474 0.96249 1.00775 1.21974 1.01648 0.98358 0.98985 0.92879 0.92961 0.92831 0.92272 0.89866 0.90546 0.91553 0.91991 0.92109 0.90763 0.90566 0.77938 0.93290 0.91463 0.90747 0.90874 0.91511 0.92674 0.92169 0.92119 0.92778 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.15 -1.18 5.35 -26.73 -0.14 -1.32 16 3 C -0.10 -1.10 3.98 -26.73 -0.11 -1.21 16 4 C -0.10 -1.10 1.61 -91.77 -0.15 -1.25 16 5 H 0.09 0.89 6.99 -51.93 -0.36 0.52 16 6 C 0.53 8.13 5.94 -10.98 -0.07 8.06 16 7 O -0.54 -10.19 15.77 5.56 0.09 -10.10 16 8 N -0.61 -9.51 3.32 -170.39 -0.57 -10.07 16 9 C 0.10 1.34 6.30 -3.07 -0.02 1.32 16 10 C -0.16 -2.51 6.64 -24.90 -0.17 -2.68 16 11 C 0.17 3.32 3.70 -65.66 -0.24 3.08 16 12 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 13 N -0.72 -17.44 5.28 -51.24 -0.27 -17.71 16 14 C -0.25 -6.61 9.98 -15.06 -0.15 -6.76 16 15 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 16 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 17 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 18 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.10 1.79 6.51 -2.41 -0.02 1.77 16 23 C -0.08 -0.81 2.73 -90.62 -0.25 -1.05 16 24 C -0.15 -1.09 7.47 37.15 0.28 -0.81 16 25 C -0.15 -1.63 8.53 37.16 0.32 -1.31 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.59 3.81 -51.93 -0.20 0.39 16 31 H 0.08 0.83 5.53 -51.93 -0.29 0.54 16 32 H 0.07 0.82 7.78 -51.93 -0.40 0.42 16 33 H 0.06 0.70 7.67 -51.93 -0.40 0.30 16 34 H 0.06 0.70 7.33 -51.93 -0.38 0.32 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.39 10.08 7.71 -40.82 -0.31 9.76 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.07 1.27 8.00 -51.93 -0.42 0.85 16 40 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 41 H 0.07 0.74 7.33 -51.93 -0.38 0.36 16 42 H 0.07 0.46 6.15 -51.92 -0.32 0.14 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.40 7.36 -51.93 -0.38 0.02 16 45 H 0.06 0.81 6.91 -51.93 -0.36 0.45 16 46 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.65 5.90 -51.93 -0.31 0.34 16 LS Contribution 358.43 15.07 5.40 5.40 Total: -1.00 -30.51 358.43 -8.36 -38.87 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -8.28 Total: 6.93 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -0.44 Total: -3.30 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.11 Total: -54.71 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.51 -8.36 -38.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186010441.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.293 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds