Wall clock time and date at job start Tue Mar 31 2020 06:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46754 * 2 1 4 4 C 1.53000 * 109.47012 * 181.81794 * 3 2 1 5 5 H 1.09002 * 109.46829 * 322.36191 * 4 3 2 6 6 C 1.50704 * 109.47162 * 202.36559 * 4 3 2 7 7 O 1.21275 * 120.00141 * 332.80544 * 6 4 3 8 8 N 1.34779 * 119.99954 * 152.80085 * 6 4 3 9 9 C 1.47019 * 125.64704 * 5.14334 * 8 6 4 10 10 C 1.54321 * 107.26974 * 181.01843 * 9 8 6 11 11 C 1.55156 * 102.94311 * 22.19608 * 10 9 8 12 12 H 1.08997 * 111.00510 * 82.60546 * 11 10 9 13 13 N 1.46497 * 111.00709 * 206.42364 * 11 10 9 14 14 C 1.36938 * 119.99948 * 273.54687 * 13 11 10 15 15 H 1.07995 * 120.00088 * 359.97438 * 14 13 11 16 16 C 1.38814 * 120.00022 * 179.97438 * 14 13 11 17 17 N 1.31622 * 120.00053 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99932 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47288 * 59.99510 * 18 16 14 20 20 H 1.48504 * 109.46996 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46645 * 299.99741 * 18 16 14 22 22 C 1.47419 * 125.64581 * 184.83238 * 8 6 4 23 23 C 1.52997 * 109.47473 * 82.36340 * 4 3 2 24 24 C 1.52992 * 109.47221 * 299.24841 * 23 4 3 25 25 C 1.53005 * 109.47057 * 59.25005 * 23 4 3 26 26 H 1.09000 * 109.47148 * 300.00062 * 1 2 3 27 27 H 1.09004 * 109.46636 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46665 * 60.00706 * 1 2 3 29 29 H 1.09004 * 109.46765 * 119.99304 * 2 1 3 30 30 H 1.09000 * 109.47148 * 239.99938 * 2 1 3 31 31 H 1.09001 * 109.47351 * 301.81033 * 3 2 1 32 32 H 1.08998 * 109.47535 * 61.81198 * 3 2 1 33 33 H 1.08997 * 109.88725 * 300.43561 * 9 8 6 34 34 H 1.08999 * 109.88326 * 61.60897 * 9 8 6 35 35 H 1.09006 * 110.72300 * 140.55530 * 10 9 8 36 36 H 1.08998 * 110.72426 * 263.83027 * 10 9 8 37 37 H 0.96998 * 120.00211 * 93.54033 * 13 11 10 38 38 H 0.97000 * 119.99447 * 180.02562 * 17 16 14 39 39 H 1.09001 * 110.36702 * 274.74819 * 22 8 6 40 40 H 1.08997 * 110.37288 * 37.07630 * 22 8 6 41 41 H 1.09000 * 109.47033 * 179.24629 * 23 4 3 42 42 H 1.09009 * 109.47373 * 75.27760 * 24 23 4 43 43 H 1.09003 * 109.47096 * 195.27108 * 24 23 4 44 44 H 1.08997 * 109.47442 * 315.27678 * 24 23 4 45 45 H 1.08997 * 109.47376 * 62.42853 * 25 23 4 46 46 H 1.08994 * 109.47486 * 182.43336 * 25 23 4 47 47 H 1.09003 * 109.46533 * 302.43213 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5693 1.4428 -0.0458 5 1 3.9511 0.6225 0.5620 6 6 4.0878 2.7511 0.4935 7 8 3.4064 3.7514 0.4166 8 7 5.3087 2.8095 1.0613 9 6 6.2778 1.7057 1.1247 10 6 7.5155 2.2259 1.8857 11 6 6.9467 3.4168 2.7016 12 1 6.4763 3.0706 3.6219 13 7 7.9908 4.4037 2.9878 14 6 8.7867 4.2575 4.0925 15 1 8.6444 3.4150 4.7529 16 6 9.7765 5.1923 4.3635 17 7 9.9503 6.2190 3.5583 18 14 10.8627 4.9926 5.8701 19 1 11.5988 3.7058 5.7826 20 1 11.8336 6.1145 5.9326 21 1 10.0194 4.9983 7.0924 22 6 5.8960 3.9926 1.7161 23 6 4.0364 1.2664 -1.4920 24 6 3.5258 -0.0704 -2.0333 25 6 3.4849 2.4077 -2.3489 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5137 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.6504 1.9657 -0.8733 32 1 1.7034 1.9469 0.9057 33 1 5.8429 0.8606 1.6582 34 1 6.5623 1.4039 0.1167 35 1 7.9111 1.4574 2.5499 36 1 8.2815 2.5666 1.1891 37 1 8.1185 5.1606 2.3948 38 1 10.6422 6.8719 3.7475 39 1 6.3766 4.6350 0.9782 40 1 5.1296 4.5451 2.2596 41 1 5.1257 1.2800 -1.5262 42 1 2.4614 0.0098 -2.2545 43 1 4.0680 -0.3244 -2.9442 44 1 3.6841 -0.8489 -1.2871 45 1 3.8830 3.3568 -1.9898 46 1 3.7816 2.2588 -3.3870 47 1 2.3971 2.4207 -2.2801 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186010441.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:56 Heat of formation + Delta-G solvation = -58.317320 kcal Electronic energy + Delta-G solvation = -23197.825733 eV Core-core repulsion = 19993.462789 eV Total energy + Delta-G solvation = -3204.362944 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.50197 -39.22519 -37.80287 -35.93739 -34.27001 -33.30740 -31.12570 -30.52794 -29.18205 -28.18798 -26.36055 -25.26548 -24.05853 -22.08790 -21.68767 -21.22024 -19.62311 -19.28752 -18.05539 -17.47172 -17.27434 -16.48012 -16.06163 -15.67949 -15.39260 -15.03564 -14.71255 -14.56763 -14.34920 -14.15648 -13.91774 -13.83762 -13.38994 -13.16475 -13.10743 -13.02056 -12.90777 -12.73887 -12.64995 -12.47729 -12.36168 -12.18217 -12.09199 -11.77843 -11.72782 -11.70575 -11.62565 -11.29028 -10.94232 -10.84631 -10.68093 -9.66124 -9.06323 -7.95757 -5.26427 1.48728 1.51765 1.57692 1.61245 1.95090 2.56857 3.33904 3.47978 3.69652 3.72428 3.80314 3.90983 4.02181 4.16426 4.24283 4.27034 4.29223 4.32574 4.37133 4.49169 4.59676 4.61767 4.69229 4.75990 4.81722 4.85644 4.90150 4.97900 4.98601 5.05741 5.11552 5.13220 5.19304 5.23160 5.25963 5.29108 5.40486 5.41347 5.43725 5.52443 5.53246 5.64852 6.24579 6.56581 7.15155 7.31186 8.02434 8.26801 9.27510 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032407 B = 0.003242 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.796273 B = 8635.068765 C = 8727.390728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.139 4.139 3 C -0.102 4.102 4 C -0.090 4.090 5 H 0.112 0.888 6 C 0.525 3.475 7 O -0.587 6.587 8 N -0.615 5.615 9 C 0.108 3.892 10 C -0.144 4.144 11 C 0.166 3.834 12 H 0.061 0.939 13 N -0.730 5.730 14 C -0.242 4.242 15 H 0.082 0.918 16 C -0.075 4.075 17 N -0.971 5.971 18 Si 0.975 3.025 19 H -0.274 1.274 20 H -0.298 1.298 21 H -0.278 1.278 22 C 0.108 3.892 23 C -0.080 4.080 24 C -0.145 4.145 25 C -0.152 4.152 26 H 0.042 0.958 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.040 0.960 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.373 0.627 38 H 0.251 0.749 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.024 0.976 46 H 0.069 0.931 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.755 -18.448 -11.137 26.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.175 4.175 3 C -0.140 4.140 4 C -0.111 4.111 5 H 0.130 0.870 6 C 0.316 3.684 7 O -0.467 6.467 8 N -0.349 5.349 9 C -0.014 4.014 10 C -0.185 4.185 11 C 0.056 3.944 12 H 0.079 0.921 13 N -0.370 5.370 14 C -0.373 4.373 15 H 0.100 0.900 16 C -0.267 4.267 17 N -0.621 5.621 18 Si 0.804 3.196 19 H -0.199 1.199 20 H -0.225 1.225 21 H -0.205 1.205 22 C -0.016 4.016 23 C -0.099 4.099 24 C -0.202 4.202 25 C -0.209 4.209 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.205 0.795 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.044 0.956 46 H 0.088 0.912 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.114 -17.998 -11.038 25.965 hybrid contribution 0.922 1.279 0.787 1.762 sum -14.191 -16.719 -10.251 24.208 Atomic orbital electron populations 1.21776 0.95845 1.02067 1.01412 1.22074 0.96101 0.95084 1.04283 1.21537 0.91959 0.98435 1.02018 1.21509 0.97815 0.93195 0.98620 0.86993 1.21185 0.79056 0.91846 0.76345 1.90656 1.58127 1.39100 1.58837 1.48612 1.15835 1.13914 1.56495 1.22226 0.88219 0.89270 1.01717 1.23206 0.96702 0.99280 0.99279 1.21490 0.88024 0.89867 0.95023 0.92085 1.42415 1.37589 1.27803 1.29163 1.19579 1.09514 1.06755 1.01485 0.90035 1.25605 1.01644 0.97359 1.02077 1.69825 1.36579 1.15189 1.40494 0.85187 0.78265 0.76862 0.79280 1.19948 1.22493 1.20462 1.22217 0.95719 0.88689 0.95021 1.21023 1.00521 0.97108 0.91247 1.22099 1.01824 0.94667 1.01580 1.21963 1.01634 0.97201 1.00077 0.93902 0.91516 0.92777 0.91663 0.88080 0.91236 0.94077 0.88740 0.89525 0.89502 0.92019 0.79483 0.93995 0.92965 0.92559 0.90789 0.91005 0.91578 0.90629 0.95638 0.91218 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 71.98 0.71 -1.29 16 2 C -0.14 -1.83 5.35 30.60 0.16 -1.66 16 3 C -0.10 -2.00 3.98 30.59 0.12 -1.88 16 4 C -0.09 -1.81 1.61 -11.54 -0.02 -1.82 16 5 H 0.11 1.75 6.99 -2.39 -0.02 1.74 16 6 C 0.52 15.83 5.94 87.66 0.52 16.35 16 7 O -0.59 -22.72 15.77 -3.02 -0.05 -22.77 16 8 N -0.62 -18.53 3.32 -811.37 -2.70 -21.23 16 9 C 0.11 2.50 6.30 86.73 0.55 3.05 16 10 C -0.14 -4.41 6.64 31.78 0.21 -4.20 16 11 C 0.17 6.41 3.70 46.46 0.17 6.58 16 12 H 0.06 2.38 8.13 -2.39 -0.02 2.36 16 13 N -0.73 -36.32 5.28 -316.01 -1.67 -37.99 16 14 C -0.24 -13.07 9.98 84.03 0.84 -12.23 16 15 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 16 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 17 N -0.97 -59.20 13.06 21.65 0.28 -58.91 16 18 Si 0.98 45.31 29.55 68.60 2.03 47.34 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 C 0.11 4.00 6.51 86.94 0.57 4.56 16 23 C -0.08 -1.33 2.73 -10.80 -0.03 -1.36 16 24 C -0.15 -1.50 7.47 71.98 0.54 -0.97 16 25 C -0.15 -3.07 8.53 71.98 0.61 -2.46 16 26 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.10 1.00 3.81 -2.39 -0.01 0.99 16 31 H 0.07 1.45 5.53 -2.39 -0.01 1.44 16 32 H 0.04 1.01 7.78 -2.39 -0.02 0.99 16 33 H 0.09 1.67 7.67 -2.39 -0.02 1.66 16 34 H 0.09 1.65 7.33 -2.39 -0.02 1.63 16 35 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.37 20.26 7.71 -92.71 -0.71 19.55 16 38 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 39 H 0.05 2.07 8.00 -2.39 -0.02 2.06 16 40 H 0.06 2.25 8.09 -2.39 -0.02 2.23 16 41 H 0.07 1.25 7.33 -2.39 -0.02 1.23 16 42 H 0.07 0.70 6.15 -2.38 -0.01 0.68 16 43 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.07 0.60 7.36 -2.39 -0.02 0.58 16 45 H 0.02 0.68 6.91 -2.39 -0.02 0.66 16 46 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.06 1.26 5.90 -2.39 -0.01 1.25 16 Total: -1.00 -68.45 358.43 3.55 -64.90 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 0.23 Total: 29.73 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 5.42 Total: -1.07 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -4.08 Total: -118.13 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.05 Total: -22.77 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -68.45 3.55 -64.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186010441.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.587 kcal (2) G-P(sol) polarization free energy of solvation -68.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds