Wall clock time and date at job start Tue Mar 31 2020 06:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46873 * 2 1 4 4 C 1.52996 * 109.46904 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47066 * 180.02562 * 4 3 2 6 6 C 1.37195 * 119.99808 * 270.00190 * 5 4 3 7 7 H 1.08005 * 119.99780 * 140.97391 * 6 5 4 8 8 C 1.38877 * 120.00103 * 320.96453 * 6 5 4 9 9 N 1.31467 * 120.00283 * 340.69377 * 8 6 5 10 10 Si 1.86797 * 119.99570 * 160.69012 * 8 6 5 11 11 H 1.48497 * 109.47375 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46893 * 120.00516 * 10 8 6 13 13 H 1.48503 * 109.47214 * 239.99886 * 10 8 6 14 14 C 1.34773 * 120.00013 * 90.00184 * 5 4 3 15 15 O 1.21582 * 120.00355 * 356.15360 * 14 5 4 16 16 N 1.34775 * 120.00139 * 176.15327 * 14 5 4 17 17 C 1.46502 * 120.00257 * 184.47133 * 16 14 5 18 18 C 1.53002 * 109.47396 * 185.15682 * 17 16 14 19 19 C 1.53005 * 109.46757 * 65.79046 * 18 17 16 20 20 C 1.53002 * 109.46757 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.47433 * 300.00545 * 20 19 18 22 22 C 1.52997 * 109.47383 * 59.99852 * 21 20 19 23 23 C 1.53000 * 109.47275 * 185.79064 * 18 17 16 24 24 H 1.09003 * 109.46949 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47386 * 299.99872 * 1 2 3 26 26 H 1.08996 * 109.46935 * 60.00266 * 1 2 3 27 27 H 1.08997 * 109.47386 * 240.00128 * 2 1 3 28 28 H 1.08996 * 109.46935 * 119.99734 * 2 1 3 29 29 H 1.09006 * 109.46781 * 59.99849 * 3 2 1 30 30 H 1.08992 * 109.47140 * 300.00121 * 3 2 1 31 31 H 1.08997 * 109.47106 * 60.00280 * 4 3 2 32 32 H 1.08992 * 109.47584 * 300.00172 * 4 3 2 33 33 H 0.96995 * 120.00205 * 185.02589 * 9 8 6 34 34 H 0.97004 * 120.00172 * 4.46971 * 16 14 5 35 35 H 1.08999 * 109.47057 * 65.15557 * 17 16 14 36 36 H 1.08997 * 109.47043 * 305.15263 * 17 16 14 37 37 H 1.08998 * 109.46726 * 305.79582 * 18 17 16 38 38 H 1.08997 * 109.47522 * 300.00199 * 19 18 17 39 39 H 1.08998 * 109.47065 * 60.00743 * 19 18 17 40 40 H 1.09003 * 109.47211 * 180.02562 * 20 19 18 41 41 H 1.09001 * 109.47335 * 60.00112 * 20 19 18 42 42 H 1.09000 * 109.46674 * 299.99547 * 21 20 19 43 43 H 1.08994 * 109.47096 * 180.02562 * 21 20 19 44 44 H 1.09002 * 109.47102 * 180.02562 * 22 21 20 45 45 H 1.08998 * 109.47076 * 59.99826 * 22 21 20 46 46 H 1.09001 * 109.47016 * 300.00289 * 23 18 17 47 47 H 1.09005 * 109.46639 * 60.00297 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8238 0.0013 6 6 4.2873 3.4709 -1.1866 7 1 4.0318 4.5151 -1.2907 8 6 4.8480 2.7832 -2.2551 9 7 5.5006 1.6615 -2.0452 10 14 4.6745 3.4523 -3.9905 11 1 3.9015 4.7198 -3.9574 12 1 6.0222 3.7096 -4.5587 13 1 3.9626 2.4596 -4.8349 14 6 4.2824 3.4588 1.1687 15 8 4.0135 2.9108 2.2202 16 7 4.8047 4.7012 1.1706 17 6 5.1396 5.3531 2.4392 18 6 5.5901 6.7904 2.1707 19 6 4.4142 7.5985 1.6181 20 6 4.8645 9.0360 1.3502 21 6 5.3506 9.6699 2.6551 22 6 6.5264 8.8618 3.2077 23 6 6.0764 7.4246 3.4753 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.9336 0.9287 -0.8891 32 1 3.9329 0.9289 0.8907 33 1 5.9541 1.2194 -2.7799 34 1 4.9589 5.1638 0.3321 35 1 5.9453 4.8051 2.9277 36 1 4.2622 5.3622 3.0857 37 1 6.4020 6.7868 1.4435 38 1 4.0676 7.1467 0.6886 39 1 3.6022 7.6021 2.3452 40 1 4.0267 9.6119 0.9569 41 1 5.6767 9.0329 0.6233 42 1 4.5384 9.6731 3.3820 43 1 5.6709 10.6940 2.4643 44 1 6.8724 9.3131 4.1376 45 1 7.3385 8.8585 2.4807 46 1 5.2644 7.4281 4.2024 47 1 6.9142 6.8489 3.8689 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186872128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:45 Heat of formation + Delta-G solvation = -70.710838 kcal Electronic energy + Delta-G solvation = -23182.947241 eV Core-core repulsion = 19978.046873 eV Total energy + Delta-G solvation = -3204.900367 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.16684 -38.25571 -35.50067 -33.88706 -33.76785 -31.42582 -30.83853 -30.50008 -28.14757 -25.29350 -24.69953 -22.69293 -22.35943 -20.95941 -20.28908 -19.75652 -19.23353 -17.63690 -16.29032 -15.29414 -14.95994 -14.77075 -14.58434 -14.48569 -14.09238 -14.01839 -13.66567 -13.40743 -13.02044 -12.96094 -12.37343 -12.15402 -12.10934 -11.89562 -11.77821 -11.60262 -11.34542 -11.16102 -11.07660 -10.96778 -10.85101 -10.51481 -10.41329 -10.35472 -10.25955 -10.14982 -10.00835 -9.94939 -9.60496 -9.14335 -8.63131 -7.97977 -7.25538 -6.27027 -3.99369 3.13108 3.23568 3.26068 4.00349 4.27755 4.51759 4.72409 4.80053 4.82378 5.08716 5.23937 5.29690 5.44604 5.47923 5.55026 5.56039 5.56781 5.58244 5.69121 5.74282 5.85826 5.95425 6.03502 6.04327 6.15518 6.17918 6.18848 6.24096 6.31057 6.33365 6.39460 6.45279 6.50361 6.53603 6.62978 6.67208 6.84422 6.95159 7.21219 7.42523 7.58494 7.69977 8.08393 8.38436 8.66290 9.20789 9.89395 10.25712 10.75814 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.004701 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.084528 B = 5954.715643 C = 7057.733723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.128 4.128 4 C 0.136 3.864 5 N -0.468 5.468 6 C -0.335 4.335 7 H 0.079 0.921 8 C 0.045 3.955 9 N -0.864 5.864 10 Si 0.910 3.090 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.280 1.280 14 C 0.677 3.323 15 O -0.646 6.646 16 N -0.746 5.746 17 C 0.150 3.850 18 C -0.097 4.097 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.111 4.111 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.049 0.951 33 H 0.267 0.733 34 H 0.398 0.602 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.253 9.850 4.317 10.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.167 4.167 4 C 0.011 3.989 5 N -0.191 5.191 6 C -0.463 4.463 7 H 0.097 0.903 8 C -0.161 4.161 9 N -0.501 5.501 10 Si 0.737 3.263 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.206 1.206 14 C 0.380 3.620 15 O -0.531 6.531 16 N -0.404 5.404 17 C 0.024 3.976 18 C -0.116 4.116 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.149 4.149 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.234 0.766 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.379 9.257 4.917 10.572 hybrid contribution 0.083 0.505 -1.412 1.502 sum -1.296 9.762 3.505 10.453 Atomic orbital electron populations 1.21757 0.96785 1.00553 1.01414 1.21436 0.94854 0.97990 1.01500 1.21939 0.98447 0.95140 1.01162 1.21213 0.90692 0.84080 1.02914 1.42553 1.61245 1.12509 1.02824 1.19198 1.41898 0.96390 0.88859 0.90317 1.25341 0.94570 0.96226 0.99957 1.69880 1.29601 1.18161 1.32416 0.86146 0.78049 0.79087 0.83008 1.19371 1.20884 1.20600 1.16179 0.79771 0.81488 0.84583 1.90716 1.62620 1.68209 1.31576 1.44935 1.70127 1.17071 1.08229 1.20952 0.99350 0.90529 0.86768 1.21386 0.98314 0.94194 0.97735 1.21577 0.97540 0.94491 1.01510 1.21546 1.00677 0.96246 0.97243 1.21538 0.98172 0.98442 0.97504 1.21508 0.97944 0.95490 1.00579 1.21486 1.00928 0.95455 0.97011 0.93521 0.93137 0.93102 0.92321 0.92477 0.93079 0.92476 0.88120 0.93268 0.92256 0.76591 0.93239 0.92617 0.90708 0.91446 0.92046 0.92297 0.92032 0.92173 0.92511 0.92295 0.92043 0.91840 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 37.16 0.37 -1.82 16 2 C -0.12 -2.10 5.93 -26.73 -0.16 -2.26 16 3 C -0.13 -2.72 5.54 -26.73 -0.15 -2.87 16 4 C 0.14 3.35 4.97 -4.04 -0.02 3.33 16 5 N -0.47 -12.11 2.51 -120.18 -0.30 -12.41 16 6 C -0.34 -8.52 8.44 -14.91 -0.13 -8.65 16 7 H 0.08 1.91 7.09 -52.48 -0.37 1.54 16 8 C 0.04 1.13 5.00 -17.47 -0.09 1.04 16 9 N -0.86 -23.06 11.44 55.49 0.63 -22.43 16 10 Si 0.91 19.50 29.60 -169.99 -5.03 14.47 16 11 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 14 C 0.68 17.31 8.22 -86.92 -0.71 16.60 16 15 O -0.65 -18.03 15.94 5.29 0.08 -17.95 16 16 N -0.75 -15.75 5.11 -65.23 -0.33 -16.09 16 17 C 0.15 2.62 5.08 -4.04 -0.02 2.60 16 18 C -0.10 -1.31 2.20 -90.62 -0.20 -1.51 16 19 C -0.11 -1.46 5.09 -26.73 -0.14 -1.59 16 20 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 21 C -0.12 -1.15 5.92 -26.73 -0.16 -1.30 16 22 C -0.12 -1.15 5.92 -26.76 -0.16 -1.31 16 23 C -0.11 -1.25 5.20 -26.76 -0.14 -1.39 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.10 2.62 5.55 -51.93 -0.29 2.33 16 32 H 0.05 1.27 7.47 -51.93 -0.39 0.88 16 33 H 0.27 6.74 8.32 -40.82 -0.34 6.40 16 34 H 0.40 8.06 6.05 -40.82 -0.25 7.82 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 0.96 7.35 -51.93 -0.38 0.58 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 365.76 15.07 5.51 5.51 Total: -1.00 -29.33 365.76 -10.14 -39.46 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -8.84 Total: 10.01 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.86 Total: -0.58 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.00 Total: -50.92 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.08 Total: -17.95 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.33 -10.14 -39.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186872128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.247 kcal (2) G-P(sol) polarization free energy of solvation -29.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds