Wall clock time and date at job start Tue Mar 31 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47265 * 2 1 4 4 C 1.53000 * 109.46904 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47645 * 305.00156 * 4 3 2 6 6 C 1.53000 * 109.46946 * 65.00343 * 4 3 2 7 7 C 1.53006 * 109.46952 * 185.00320 * 4 3 2 8 8 C 1.50697 * 109.46957 * 175.00508 * 7 4 3 9 9 O 1.21278 * 120.00239 * 359.97438 * 8 7 4 10 10 N 1.34785 * 119.99844 * 180.02562 * 8 7 4 11 11 C 1.47426 * 125.64627 * 359.96963 * 10 8 7 12 12 C 1.54911 * 104.82682 * 155.90553 * 11 10 8 13 13 C 1.55150 * 101.58474 * 37.01139 * 12 11 10 14 14 H 1.08999 * 110.72114 * 83.02858 * 13 12 11 15 15 N 1.46495 * 110.72310 * 206.13417 * 13 12 11 16 16 C 1.46497 * 120.00070 * 56.15148 * 15 13 12 17 17 C 1.36942 * 119.99852 * 236.15668 * 15 13 12 18 18 H 1.07999 * 120.00270 * 340.57506 * 17 15 13 19 19 C 1.38814 * 119.99890 * 160.29313 * 17 15 13 20 20 N 1.31616 * 119.99756 * 347.09624 * 19 17 15 21 21 Si 1.86793 * 119.99945 * 167.09209 * 19 17 15 22 22 H 1.48497 * 109.47480 * 90.00359 * 21 19 17 23 23 H 1.48502 * 109.47450 * 210.00508 * 21 19 17 24 24 H 1.48508 * 109.47254 * 330.00084 * 21 19 17 25 25 C 1.47313 * 125.61195 * 180.19364 * 10 8 7 26 26 H 1.09004 * 109.46871 * 299.99254 * 1 2 3 27 27 H 1.08992 * 109.47512 * 59.99581 * 1 2 3 28 28 H 1.09002 * 109.47482 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46894 * 239.99958 * 2 1 3 30 30 H 1.09004 * 109.47308 * 120.00788 * 2 1 3 31 31 H 1.09004 * 109.46568 * 60.00560 * 3 2 1 32 32 H 1.08992 * 109.47197 * 300.00611 * 3 2 1 33 33 H 1.09006 * 109.47066 * 179.97438 * 6 4 3 34 34 H 1.08996 * 109.47179 * 299.99639 * 6 4 3 35 35 H 1.09005 * 109.47106 * 60.00320 * 6 4 3 36 36 H 1.09001 * 109.46960 * 54.99924 * 7 4 3 37 37 H 1.09007 * 109.46816 * 295.00091 * 7 4 3 38 38 H 1.08997 * 110.36633 * 37.06964 * 11 10 8 39 39 H 1.09000 * 110.45914 * 274.79478 * 11 10 8 40 40 H 1.09000 * 111.00362 * 278.93070 * 12 11 10 41 41 H 1.09004 * 110.99643 * 155.08444 * 12 11 10 42 42 H 1.09002 * 109.47427 * 264.82071 * 16 15 13 43 43 H 1.08995 * 109.47151 * 24.82271 * 16 15 13 44 44 H 1.08997 * 109.46799 * 144.82039 * 16 15 13 45 45 H 0.97002 * 120.00013 * 179.97438 * 20 19 17 46 46 H 1.08996 * 110.06865 * 61.68608 * 25 10 8 47 47 H 1.09000 * 109.84952 * 300.41408 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9338 0.8528 0.8409 6 6 4.0794 0.8330 -1.3084 7 6 4.0801 2.8794 0.1252 8 6 5.5821 2.8703 0.2479 9 8 6.1851 1.8181 0.2364 10 7 6.2552 4.0315 0.3715 11 6 5.6510 5.3759 0.4004 12 6 6.6802 6.2570 1.1515 13 6 8.0231 5.6725 0.6396 14 1 8.2898 6.1057 -0.3244 15 7 9.0908 5.8928 1.6181 16 6 8.9380 5.4056 2.9912 17 6 10.2318 6.5542 1.2492 18 1 10.4941 6.6375 0.2049 19 6 11.0482 7.1228 2.2173 20 7 10.6121 7.2527 3.4523 21 14 12.7656 7.7033 1.7672 22 1 12.7109 9.1229 1.3347 23 1 13.6556 7.5801 2.9496 24 1 13.2959 6.8684 0.6594 25 6 7.7168 4.1667 0.4954 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5140 0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6766 1.9563 -0.8899 33 1 5.1695 0.8333 -1.3090 34 1 3.7160 -0.1907 -1.3979 35 1 3.7158 1.4227 -2.1499 36 1 3.6459 3.3428 1.0110 37 1 3.7914 3.4462 -0.7600 38 1 4.7042 5.3548 0.9401 39 1 5.5008 5.7480 -0.6130 40 1 6.5863 6.1338 2.2304 41 1 6.5772 7.3048 0.8690 42 1 8.5547 6.2084 3.6211 43 1 8.2398 4.5688 3.0042 44 1 9.9059 5.0773 3.3700 45 1 11.1827 7.6497 4.1289 46 1 8.2057 3.7727 -0.3955 47 1 8.0645 3.6315 1.3790 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189271301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:41 Heat of formation + Delta-G solvation = -33.018197 kcal Electronic energy + Delta-G solvation = -22803.724162 eV Core-core repulsion = 19600.458270 eV Total energy + Delta-G solvation = -3203.265892 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.91573 -37.86339 -36.53904 -34.78369 -32.83558 -31.64263 -29.80964 -28.68898 -27.11494 -26.71556 -26.04859 -23.61477 -22.32293 -21.96272 -20.23558 -19.21259 -18.79132 -17.06058 -16.82629 -16.11755 -15.59268 -15.12756 -14.99829 -14.41053 -14.07018 -13.71127 -13.65266 -13.33484 -13.22833 -12.85093 -12.56771 -12.40835 -12.28729 -12.00952 -11.81749 -11.65106 -11.61899 -11.38027 -11.10069 -10.96697 -10.80789 -10.78821 -10.68448 -10.57797 -10.57474 -10.45795 -10.25520 -9.89147 -9.85907 -9.43856 -8.58375 -8.28225 -6.85926 -5.76650 -3.21143 2.88400 3.25681 3.36384 3.43398 3.45598 4.45658 4.51370 4.63769 4.70874 4.93917 4.96435 5.04671 5.09102 5.27031 5.28625 5.39881 5.40921 5.52207 5.52995 5.56376 5.58362 5.63760 5.70067 5.76735 5.78761 5.83248 5.90008 5.98771 6.00217 6.02334 6.12425 6.31265 6.33170 6.39803 6.45408 6.57572 6.66836 6.80083 6.86885 7.38640 7.68514 7.78350 7.85117 8.32719 8.44606 9.18403 9.81184 10.28490 11.28375 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045367 B = 0.002908 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.038244 B = 9625.677621 C = 9760.178681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.076 4.076 5 H 0.077 0.923 6 C -0.153 4.153 7 C -0.132 4.132 8 C 0.523 3.477 9 O -0.545 6.545 10 N -0.615 5.615 11 C 0.100 3.900 12 C -0.151 4.151 13 C 0.173 3.827 14 H 0.078 0.922 15 N -0.588 5.588 16 C 0.162 3.838 17 C -0.258 4.258 18 H 0.071 0.929 19 C 0.002 3.998 20 N -0.907 5.907 21 Si 0.907 3.093 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.087 3.913 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.030 0.970 43 H 0.000 1.000 44 H 0.046 0.954 45 H 0.253 0.747 46 H 0.059 0.941 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.330 -8.140 -6.895 21.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.152 4.152 4 C -0.095 4.095 5 H 0.096 0.904 6 C -0.210 4.210 7 C -0.172 4.172 8 C 0.311 3.689 9 O -0.424 6.424 10 N -0.349 5.349 11 C -0.023 4.023 12 C -0.191 4.191 13 C 0.062 3.938 14 H 0.096 0.904 15 N -0.309 5.309 16 C 0.018 3.982 17 C -0.387 4.387 18 H 0.089 0.911 19 C -0.197 4.197 20 N -0.552 5.552 21 Si 0.737 3.263 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.037 4.037 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.049 0.951 43 H 0.018 0.982 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.078 0.922 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.906 -8.693 -6.729 21.011 hybrid contribution 0.874 0.549 -0.077 1.035 sum -17.033 -8.144 -6.806 20.069 Atomic orbital electron populations 1.21781 0.96124 1.01412 1.01667 1.21575 0.95466 0.97059 1.02288 1.21679 0.94805 0.96877 1.01886 1.20906 0.94267 0.94446 0.99870 0.90442 1.21988 1.03251 0.99966 0.95824 1.21730 0.92318 0.99330 1.03819 1.20327 0.89701 0.82424 0.76411 1.90648 1.70491 1.30257 1.50966 1.48657 1.08677 1.05864 1.71671 1.22342 0.97179 0.82575 1.00244 1.23370 0.96078 0.98868 1.00824 1.21290 0.87898 0.90435 0.94183 0.90412 1.43907 1.15452 1.64487 1.07040 1.20800 0.98374 0.94226 0.84819 1.19241 0.98112 1.28524 0.92849 0.91118 1.24972 0.99487 0.99086 0.96117 1.70092 1.35545 1.47677 1.01920 0.86225 0.84233 0.78518 0.77349 1.21435 1.21576 1.20515 1.22810 0.78663 1.00671 1.01606 0.92852 0.92868 0.92960 0.91711 0.92032 0.92037 0.92010 0.90639 0.92898 0.93568 0.89245 0.89275 0.91403 0.91711 0.90617 0.90398 0.95122 0.98203 0.93491 0.93695 0.92233 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.13 -1.00 5.69 -26.73 -0.15 -1.15 16 3 C -0.11 -0.95 4.68 -26.73 -0.13 -1.08 16 4 C -0.08 -0.81 2.04 -90.62 -0.18 -1.00 16 5 H 0.08 0.96 7.95 -51.93 -0.41 0.54 16 6 C -0.15 -1.72 8.69 37.16 0.32 -1.39 16 7 C -0.13 -1.46 4.18 -27.88 -0.12 -1.57 16 8 C 0.52 8.14 7.57 -10.98 -0.08 8.06 16 9 O -0.55 -10.36 14.29 5.56 0.08 -10.28 16 10 N -0.61 -9.75 3.33 -170.28 -0.57 -10.32 16 11 C 0.10 1.31 6.69 -2.53 -0.02 1.29 16 12 C -0.15 -2.48 6.64 -24.59 -0.16 -2.64 16 13 C 0.17 3.38 3.43 -66.10 -0.23 3.16 16 14 H 0.08 1.50 7.91 -51.93 -0.41 1.09 16 15 N -0.59 -14.36 2.94 -171.39 -0.50 -14.87 16 16 C 0.16 3.97 7.54 59.85 0.45 4.42 16 17 C -0.26 -6.93 9.65 -15.06 -0.15 -7.07 16 18 H 0.07 1.84 7.82 -52.49 -0.41 1.43 16 19 C 0.00 0.04 5.11 -17.43 -0.09 -0.05 16 20 N -0.91 -26.04 10.51 55.49 0.58 -25.45 16 21 Si 0.91 21.61 29.57 -169.99 -5.03 16.58 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.09 1.62 6.41 -2.90 -0.02 1.60 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.52 6.56 -51.93 -0.34 0.18 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 1.07 5.95 -51.93 -0.31 0.76 16 34 H 0.05 0.53 6.56 -51.93 -0.34 0.19 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.86 7.85 -51.93 -0.41 0.46 16 37 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 38 H 0.07 0.73 7.48 -51.93 -0.39 0.35 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.36 7.19 -51.93 -0.37 0.99 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 43 H 0.00 -0.01 6.45 -51.93 -0.34 -0.35 16 44 H 0.05 1.25 7.11 -51.93 -0.37 0.88 16 45 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.07 1.51 6.30 -51.93 -0.33 1.18 16 LS Contribution 360.64 15.07 5.43 5.43 Total: -1.00 -30.31 360.64 -8.78 -39.08 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -8.60 Total: -2.09 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -0.18 Total: 1.91 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.49 Total: -50.64 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.31 -8.78 -39.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189271301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.067 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds