Wall clock time and date at job start Tue Mar 31 2020 06:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47064 * 2 1 4 4 C 1.52996 * 109.46842 * 180.02562 * 3 2 1 5 5 H 1.08992 * 109.47355 * 304.99756 * 4 3 2 6 6 C 1.53006 * 109.47310 * 64.99935 * 4 3 2 7 7 C 1.53001 * 109.47070 * 184.99841 * 4 3 2 8 8 C 1.50701 * 109.47415 * 175.00152 * 7 4 3 9 9 O 1.21280 * 119.99767 * 359.97438 * 8 7 4 10 10 N 1.34779 * 120.00121 * 180.02562 * 8 7 4 11 11 C 1.47019 * 125.64872 * 359.68721 * 10 8 7 12 12 C 1.54327 * 107.26306 * 178.85165 * 11 10 8 13 13 C 1.55154 * 103.02643 * 338.14130 * 12 11 10 14 14 H 1.09001 * 111.00468 * 277.23574 * 13 12 11 15 15 N 1.46494 * 111.04154 * 153.39737 * 13 12 11 16 16 C 1.46501 * 119.99825 * 307.78532 * 15 13 12 17 17 C 1.36935 * 120.00227 * 127.78733 * 15 13 12 18 18 H 1.07997 * 119.99739 * 23.25823 * 17 15 13 19 19 C 1.38815 * 119.99913 * 203.26162 * 17 15 13 20 20 N 1.31618 * 120.00038 * 13.81382 * 19 17 15 21 21 Si 1.86801 * 120.00029 * 193.81705 * 19 17 15 22 22 H 1.48499 * 109.47198 * 89.99711 * 21 19 17 23 23 H 1.48493 * 109.47048 * 210.00061 * 21 19 17 24 24 H 1.48499 * 109.46815 * 330.00008 * 21 19 17 25 25 C 1.47427 * 125.64648 * 180.02562 * 10 8 7 26 26 H 1.08991 * 109.47183 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46632 * 300.00200 * 1 2 3 28 28 H 1.09000 * 109.47282 * 59.99903 * 1 2 3 29 29 H 1.08999 * 109.47100 * 240.00006 * 2 1 3 30 30 H 1.09001 * 109.46922 * 119.99692 * 2 1 3 31 31 H 1.08999 * 109.47157 * 60.00041 * 3 2 1 32 32 H 1.09000 * 109.47150 * 300.00178 * 3 2 1 33 33 H 1.09001 * 109.47036 * 59.99722 * 6 4 3 34 34 H 1.08995 * 109.47002 * 299.99773 * 6 4 3 35 35 H 1.08999 * 109.46893 * 179.97438 * 6 4 3 36 36 H 1.09008 * 109.47103 * 295.00256 * 7 4 3 37 37 H 1.09000 * 109.47279 * 54.99893 * 7 4 3 38 38 H 1.09005 * 109.88463 * 298.40058 * 11 10 8 39 39 H 1.09004 * 109.88082 * 59.56349 * 11 10 8 40 40 H 1.09004 * 110.84916 * 219.66952 * 12 11 10 41 41 H 1.08998 * 110.51717 * 96.45558 * 12 11 10 42 42 H 1.09005 * 109.47086 * 95.15792 * 16 15 13 43 43 H 1.08998 * 109.47268 * 215.16094 * 16 15 13 44 44 H 1.08998 * 109.47298 * 335.16292 * 16 15 13 45 45 H 0.96994 * 119.99834 * 179.97438 * 20 19 17 46 46 H 1.09006 * 110.36184 * 322.92213 * 25 10 8 47 47 H 1.08994 * 110.36859 * 85.24779 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0795 0.8330 -1.3083 7 6 4.0801 2.8794 0.1250 8 6 5.5821 2.8705 0.2479 9 8 6.1851 1.8183 0.2366 10 7 6.2551 4.0316 0.3714 11 6 5.6530 5.3727 0.3942 12 6 6.8011 6.3870 0.5804 13 6 7.9284 5.5274 1.2111 14 1 7.7898 5.4305 2.2879 15 7 9.2484 6.0825 0.9022 16 6 9.6128 6.3768 -0.4859 17 6 10.1418 6.3263 1.9110 18 1 10.0587 5.7930 2.8464 19 6 11.1542 7.2589 1.7312 20 7 11.1035 8.0982 0.7186 21 14 12.5884 7.3226 2.9263 22 1 13.6705 6.4244 2.4494 23 1 13.1010 8.7137 3.0107 24 1 12.1338 6.8803 4.2691 25 6 7.7175 4.1677 0.4990 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.7158 1.4225 -2.1499 34 1 3.7161 -0.1907 -1.3978 35 1 5.1695 0.8334 -1.3089 36 1 3.7913 3.4463 -0.7602 37 1 3.6459 3.3430 1.0108 38 1 5.1364 5.5632 -0.5465 39 1 4.9532 5.4508 1.2263 40 1 6.5042 7.1894 1.2560 41 1 7.1157 6.7891 -0.3826 42 1 9.4117 7.4266 -0.6996 43 1 10.6731 6.1724 -0.6344 44 1 9.0245 5.7505 -1.1566 45 1 11.8107 8.7501 0.5933 46 1 8.1226 3.3561 1.1035 47 1 8.1848 4.1783 -0.4856 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189271302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:44 Heat of formation + Delta-G solvation = -51.868347 kcal Electronic energy + Delta-G solvation = -22747.367379 eV Core-core repulsion = 19543.284084 eV Total energy + Delta-G solvation = -3204.083295 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.17341 -39.18172 -37.50181 -36.51955 -33.68805 -33.34112 -31.36204 -29.92314 -28.36544 -28.04186 -27.41450 -25.18238 -23.81817 -22.70254 -21.08355 -20.87149 -19.90325 -18.95861 -18.04794 -17.51776 -16.77176 -16.47074 -16.04352 -15.78579 -15.19958 -15.11084 -14.75526 -14.56348 -14.43125 -14.26863 -14.14960 -13.60253 -13.51729 -13.14876 -12.95451 -12.84455 -12.80472 -12.59509 -12.47097 -12.40155 -12.30730 -12.14294 -12.10305 -11.84951 -11.78909 -11.62598 -11.47781 -11.41583 -11.23873 -10.70869 -10.62584 -9.61310 -8.80186 -7.85483 -5.34952 1.45966 1.48104 1.56050 1.68821 2.02326 2.50397 3.26173 3.52747 3.59144 3.82423 3.93510 3.99616 4.02229 4.20035 4.28189 4.31488 4.35703 4.45708 4.46677 4.57826 4.68887 4.73993 4.76111 4.79273 4.84100 4.90228 4.96189 4.99860 5.02543 5.09468 5.18360 5.22551 5.24944 5.29326 5.29348 5.34789 5.43371 5.46480 5.58110 5.61418 5.62708 5.68669 6.30105 6.63670 7.11722 7.22360 7.82237 8.26394 9.17186 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043167 B = 0.002879 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.484702 B = 9722.546253 C = 9841.826561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.107 4.107 4 C -0.074 4.074 5 H 0.055 0.945 6 C -0.151 4.151 7 C -0.122 4.122 8 C 0.517 3.483 9 O -0.587 6.587 10 N -0.617 5.617 11 C 0.110 3.890 12 C -0.142 4.142 13 C 0.166 3.834 14 H 0.072 0.928 15 N -0.602 5.602 16 C 0.178 3.822 17 C -0.269 4.269 18 H 0.069 0.931 19 C -0.048 4.048 20 N -0.933 5.933 21 Si 0.968 3.032 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.269 1.269 25 C 0.097 3.903 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.040 0.960 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.014 0.986 43 H 0.011 0.989 44 H 0.028 0.972 45 H 0.249 0.751 46 H 0.048 0.952 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.802 -9.224 -2.660 23.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.144 4.144 4 C -0.093 4.093 5 H 0.074 0.926 6 C -0.208 4.208 7 C -0.162 4.162 8 C 0.308 3.692 9 O -0.468 6.468 10 N -0.351 5.351 11 C -0.012 4.012 12 C -0.182 4.182 13 C 0.057 3.943 14 H 0.090 0.910 15 N -0.324 5.324 16 C 0.033 3.967 17 C -0.399 4.399 18 H 0.087 0.913 19 C -0.243 4.243 20 N -0.579 5.579 21 Si 0.796 3.204 22 H -0.216 1.216 23 H -0.219 1.219 24 H -0.193 1.193 25 C -0.029 4.029 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.032 0.968 43 H 0.030 0.970 44 H 0.046 0.954 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.411 -9.697 -2.715 23.661 hybrid contribution 1.614 0.211 0.437 1.686 sum -19.797 -9.486 -2.278 22.070 Atomic orbital electron populations 1.21762 0.95104 1.01791 1.02124 1.21585 0.96347 0.96905 1.01781 1.21617 0.92542 0.97234 1.03015 1.20885 0.96022 0.93963 0.98444 0.92631 1.21941 1.00946 1.00949 0.96979 1.21798 0.88233 1.00010 1.06130 1.21243 0.91560 0.81386 0.75016 1.90643 1.71756 1.31761 1.52642 1.48658 1.07393 1.07268 1.71792 1.22180 0.95809 0.79637 1.03590 1.23051 0.95185 0.98104 1.01822 1.21538 0.84948 0.90467 0.97378 0.90984 1.43974 1.11683 1.73440 1.03277 1.20501 0.96183 0.96619 0.83402 1.19508 1.07516 1.16616 0.96222 0.91343 1.25752 1.02666 0.95927 1.00003 1.70206 1.33909 1.20732 1.33024 0.85259 0.79613 0.76399 0.79114 1.21619 1.21883 1.19333 1.22576 0.81118 0.99273 0.99907 0.92721 0.92451 0.92316 0.92109 0.92785 0.90915 0.90767 0.92189 0.92251 0.94082 0.86777 0.86649 0.89068 0.88718 0.89726 0.91692 0.96759 0.97029 0.95389 0.94128 0.93301 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 71.98 0.71 -0.93 16 2 C -0.13 -1.73 5.69 30.60 0.17 -1.56 16 3 C -0.11 -1.40 4.68 30.59 0.14 -1.26 16 4 C -0.07 -1.40 2.04 -10.79 -0.02 -1.43 16 5 H 0.06 1.30 7.95 -2.39 -0.02 1.28 16 6 C -0.15 -3.21 8.69 71.98 0.63 -2.58 16 7 C -0.12 -2.24 4.37 29.85 0.13 -2.11 16 8 C 0.52 15.09 7.57 87.66 0.66 15.75 16 9 O -0.59 -22.22 14.22 -3.03 -0.04 -22.26 16 10 N -0.62 -18.30 3.33 -811.73 -2.70 -21.00 16 11 C 0.11 2.48 6.49 86.73 0.56 3.05 16 12 C -0.14 -4.37 6.50 31.78 0.21 -4.16 16 13 C 0.17 6.50 3.54 46.39 0.16 6.67 16 14 H 0.07 2.88 7.96 -2.39 -0.02 2.87 16 15 N -0.60 -29.71 2.96 -694.99 -2.06 -31.76 16 16 C 0.18 8.68 7.57 127.77 0.97 9.65 16 17 C -0.27 -14.65 9.60 84.03 0.81 -13.85 16 18 H 0.07 3.66 7.87 -2.91 -0.02 3.64 16 19 C -0.05 -2.65 5.08 84.86 0.43 -2.22 16 20 N -0.93 -54.36 10.77 21.65 0.23 -54.12 16 21 Si 0.97 44.97 29.58 68.60 2.03 47.00 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 C 0.10 3.62 6.47 86.86 0.56 4.18 16 26 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.86 6.56 -2.39 -0.02 0.84 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.14 6.56 -2.39 -0.02 1.13 16 35 H 0.04 1.16 5.95 -2.39 -0.01 1.15 16 36 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 41 H 0.06 2.17 7.00 -2.39 -0.02 2.15 16 42 H 0.01 0.75 7.33 -2.38 -0.02 0.73 16 43 H 0.01 0.60 7.38 -2.39 -0.02 0.58 16 44 H 0.03 1.18 6.38 -2.39 -0.02 1.17 16 45 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 46 H 0.05 2.01 8.04 -2.38 -0.02 1.99 16 47 H 0.05 2.06 6.42 -2.39 -0.02 2.04 16 Total: -1.00 -67.36 361.78 4.50 -62.86 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.91 Total: 10.08 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 6.13 Total: 9.21 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -4.52 Total: -106.88 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.04 Total: -22.26 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -67.36 4.50 -62.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189271302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.992 kcal (2) G-P(sol) polarization free energy of solvation -67.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds