Wall clock time and date at job start Tue Mar 31 2020 06:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47524 * 2 1 4 4 C 1.53004 * 109.47524 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46785 * 54.99992 * 4 3 2 6 6 C 1.52999 * 109.46769 * 295.00102 * 4 3 2 7 7 C 1.53000 * 109.47175 * 174.99736 * 4 3 2 8 8 C 1.50702 * 109.46896 * 184.99916 * 7 4 3 9 9 O 1.21281 * 120.00080 * 0.02562 * 8 7 4 10 10 N 1.34776 * 119.99805 * 180.02562 * 8 7 4 11 11 C 1.47017 * 125.65146 * 0.02682 * 10 8 7 12 12 C 1.54320 * 107.27139 * 181.02485 * 11 10 8 13 13 C 1.55148 * 102.94511 * 22.19161 * 12 11 10 14 14 H 1.08995 * 111.00925 * 82.57130 * 13 12 11 15 15 N 1.46497 * 111.00753 * 206.38856 * 13 12 11 16 16 C 1.46501 * 119.99834 * 58.54271 * 15 13 12 17 17 C 1.36944 * 120.00260 * 238.54938 * 15 13 12 18 18 H 1.07997 * 119.99542 * 23.28868 * 17 15 13 19 19 C 1.38814 * 119.99837 * 203.29557 * 17 15 13 20 20 N 1.31617 * 120.00135 * 13.96097 * 19 17 15 21 21 Si 1.86798 * 119.99736 * 193.95749 * 19 17 15 22 22 H 1.48507 * 109.47008 * 89.99782 * 21 19 17 23 23 H 1.48488 * 109.47333 * 209.99797 * 21 19 17 24 24 H 1.48499 * 109.47171 * 330.00477 * 21 19 17 25 25 C 1.47430 * 125.64439 * 179.71774 * 10 8 7 26 26 H 1.08998 * 109.46904 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46673 * 59.99603 * 1 2 3 28 28 H 1.09001 * 109.46885 * 300.00230 * 1 2 3 29 29 H 1.09000 * 109.47186 * 120.00504 * 2 1 3 30 30 H 1.09001 * 109.46885 * 239.99770 * 2 1 3 31 31 H 1.09010 * 109.47251 * 299.99877 * 3 2 1 32 32 H 1.09001 * 109.47228 * 59.99980 * 3 2 1 33 33 H 1.09003 * 109.47182 * 60.00385 * 6 4 3 34 34 H 1.09002 * 109.46668 * 179.97438 * 6 4 3 35 35 H 1.08996 * 109.46948 * 299.99688 * 6 4 3 36 36 H 1.08988 * 109.47267 * 305.00120 * 7 4 3 37 37 H 1.08997 * 109.46546 * 65.00487 * 7 4 3 38 38 H 1.09007 * 109.88010 * 300.43889 * 11 10 8 39 39 H 1.09004 * 109.88390 * 61.44977 * 11 10 8 40 40 H 1.08999 * 110.71892 * 140.55939 * 12 11 10 41 41 H 1.09004 * 110.71765 * 263.64497 * 12 11 10 42 42 H 1.09000 * 109.47398 * 95.17292 * 16 15 13 43 43 H 1.09010 * 109.47160 * 215.17116 * 16 15 13 44 44 H 1.09000 * 109.47157 * 335.17006 * 16 15 13 45 45 H 0.96996 * 119.99757 * 180.02562 * 20 19 17 46 46 H 1.08994 * 110.36455 * 274.74625 * 25 10 8 47 47 H 1.08996 * 110.36583 * 37.07044 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5702 1.4424 0.0006 5 1 3.9338 0.8528 -0.8409 6 6 4.0795 0.8329 1.3083 7 6 4.0802 2.8794 -0.1251 8 6 5.5822 2.8703 -0.2480 9 8 6.1852 1.8181 -0.2366 10 7 6.2553 4.0315 -0.3706 11 6 5.6529 5.3723 -0.3982 12 6 6.8016 6.3870 -0.5780 13 6 7.9289 5.5277 -1.2089 14 1 7.7907 5.4314 -2.2857 15 7 9.2486 6.0833 -0.8993 16 6 9.6652 6.2478 0.4955 17 6 10.0926 6.4492 -1.9138 18 1 9.6934 6.6901 -2.8879 19 6 11.4613 6.5100 -1.6899 20 7 11.9765 5.9623 -0.6097 21 14 12.5718 7.3693 -2.9219 22 1 12.6993 8.8033 -2.5573 23 1 13.9135 6.7335 -2.9065 24 1 11.9851 7.2547 -4.2812 25 6 7.7182 4.1678 -0.4927 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.6768 1.9563 -0.8901 32 1 1.6768 1.9563 0.8900 33 1 3.7162 -0.1909 1.3978 34 1 5.1695 0.8325 1.3086 35 1 3.7158 1.4225 2.1498 36 1 3.6460 3.3428 -1.0109 37 1 3.7915 3.4461 0.7600 38 1 4.9567 5.4487 -1.2334 39 1 5.1299 5.5631 0.5390 40 1 6.5049 7.1897 -1.2531 41 1 7.1138 6.7908 0.3851 42 1 10.2485 5.3807 0.8052 43 1 10.2738 7.1474 0.5893 44 1 8.7834 6.3380 1.1299 45 1 12.9328 6.0052 -0.4532 46 1 8.1817 4.1800 0.4937 47 1 8.1259 3.3555 -1.0943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189271303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:50 Heat of formation + Delta-G solvation = -35.307558 kcal Electronic energy + Delta-G solvation = -22773.096855 eV Core-core repulsion = 19569.731689 eV Total energy + Delta-G solvation = -3203.365166 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.89849 -37.84884 -36.52629 -34.78535 -32.82509 -31.66101 -29.82213 -28.66791 -27.11217 -26.70320 -26.05430 -23.61336 -22.36149 -21.91909 -20.19595 -19.30587 -18.72900 -17.04793 -16.82462 -15.97032 -15.74479 -15.14950 -14.83938 -14.45315 -13.96697 -13.86724 -13.60645 -13.35575 -13.18360 -12.76641 -12.49895 -12.44388 -12.26524 -12.11832 -11.90868 -11.74494 -11.61401 -11.43048 -11.09193 -10.92256 -10.83280 -10.77139 -10.67934 -10.56171 -10.51361 -10.47322 -10.27217 -9.90157 -9.83930 -9.40963 -8.60616 -8.26369 -6.81514 -5.77483 -3.25590 2.90462 3.27795 3.36653 3.43094 3.44391 4.44622 4.53081 4.65078 4.71613 4.95325 4.97498 5.01617 5.10158 5.25942 5.30247 5.35666 5.43183 5.49413 5.53619 5.55746 5.60915 5.65620 5.71421 5.77892 5.81954 5.83638 5.89601 6.00445 6.01362 6.02709 6.13448 6.31408 6.33972 6.39412 6.47064 6.58036 6.65136 6.76919 6.87983 7.30559 7.68473 7.76642 7.87982 8.33738 8.47090 9.17174 9.79650 10.28669 11.26807 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041196 B = 0.002922 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.509185 B = 9580.500564 C = 9706.453022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.076 4.076 5 H 0.077 0.923 6 C -0.154 4.154 7 C -0.132 4.132 8 C 0.522 3.478 9 O -0.544 6.544 10 N -0.616 5.616 11 C 0.105 3.895 12 C -0.154 4.154 13 C 0.173 3.827 14 H 0.078 0.922 15 N -0.585 5.585 16 C 0.158 3.842 17 C -0.262 4.262 18 H 0.070 0.930 19 C 0.005 3.995 20 N -0.903 5.903 21 Si 0.907 3.093 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.087 3.913 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.042 0.958 44 H 0.002 0.998 45 H 0.254 0.746 46 H 0.066 0.934 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.650 -5.035 2.666 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.152 4.152 4 C -0.095 4.095 5 H 0.096 0.904 6 C -0.211 4.211 7 C -0.172 4.172 8 C 0.311 3.689 9 O -0.422 6.422 10 N -0.351 5.351 11 C -0.019 4.019 12 C -0.194 4.194 13 C 0.062 3.938 14 H 0.096 0.904 15 N -0.305 5.305 16 C 0.014 3.986 17 C -0.391 4.391 18 H 0.088 0.912 19 C -0.194 4.194 20 N -0.547 5.547 21 Si 0.737 3.263 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.037 4.037 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.021 0.979 45 H 0.064 0.936 46 H 0.085 0.915 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.140 -5.653 2.740 21.097 hybrid contribution 0.666 0.553 -0.526 1.013 sum -19.475 -5.100 2.214 20.253 Atomic orbital electron populations 1.21783 0.96137 1.01406 1.01648 1.21575 0.95448 0.97070 1.02308 1.21679 0.94830 0.96866 1.01851 1.20907 0.94235 0.94462 0.99892 0.90437 1.21990 1.03317 0.99956 0.95808 1.21727 0.92373 0.99308 1.03775 1.20320 0.89673 0.82474 0.76424 1.90657 1.70492 1.30212 1.50848 1.48610 1.08997 1.05687 1.71758 1.22004 0.96771 0.82559 1.00542 1.23210 0.95846 0.97675 1.02692 1.21500 0.86165 0.88894 0.97211 0.90430 1.43861 1.12644 1.70838 1.03157 1.20814 0.94136 1.00752 0.82893 1.19215 0.87296 1.39826 0.92772 0.91206 1.25071 0.96894 0.99681 0.97794 1.70072 1.11484 1.45465 1.27668 0.86214 0.80091 0.79232 0.80739 1.21426 1.21718 1.20419 1.23103 0.78283 1.00885 1.01467 0.92959 0.92873 0.92869 0.91689 0.92035 0.92068 0.92023 0.92898 0.90592 0.93564 0.89293 0.89320 0.91968 0.92205 0.90650 0.90555 0.94860 0.93959 0.97915 0.93596 0.91542 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.13 -1.01 5.69 -26.73 -0.15 -1.16 16 3 C -0.11 -0.96 4.68 -26.73 -0.13 -1.08 16 4 C -0.08 -0.82 2.04 -90.62 -0.18 -1.01 16 5 H 0.08 0.96 7.95 -51.93 -0.41 0.55 16 6 C -0.15 -1.78 8.69 37.16 0.32 -1.45 16 7 C -0.13 -1.47 4.37 -27.88 -0.12 -1.59 16 8 C 0.52 8.28 7.57 -10.98 -0.08 8.20 16 9 O -0.54 -10.59 14.22 5.56 0.08 -10.51 16 10 N -0.62 -9.94 3.32 -170.38 -0.57 -10.51 16 11 C 0.10 1.36 6.48 -3.07 -0.02 1.34 16 12 C -0.15 -2.40 6.48 -24.90 -0.16 -2.56 16 13 C 0.17 3.43 3.55 -65.67 -0.23 3.19 16 14 H 0.08 1.56 7.95 -51.93 -0.41 1.15 16 15 N -0.58 -14.21 2.96 -170.90 -0.51 -14.72 16 16 C 0.16 3.79 7.60 59.85 0.45 4.24 16 17 C -0.26 -7.03 9.60 -15.06 -0.14 -7.17 16 18 H 0.07 1.83 7.86 -52.49 -0.41 1.41 16 19 C 0.00 0.13 5.08 -17.43 -0.09 0.04 16 20 N -0.90 -26.08 10.78 55.49 0.60 -25.48 16 21 Si 0.91 21.59 29.58 -169.99 -5.03 16.56 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.09 1.70 6.47 -2.41 -0.02 1.68 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.55 6.56 -51.93 -0.34 0.21 16 34 H 0.08 1.11 5.95 -51.93 -0.31 0.80 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.84 8.14 -51.94 -0.42 0.42 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.08 1.24 6.38 -51.93 -0.33 0.91 16 42 H 0.03 0.88 7.33 -51.93 -0.38 0.50 16 43 H 0.04 1.08 7.39 -51.92 -0.38 0.70 16 44 H 0.00 0.05 6.34 -51.93 -0.33 -0.28 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.07 1.39 7.06 -51.93 -0.37 1.03 16 47 H 0.07 1.55 8.03 -51.93 -0.42 1.13 16 LS Contribution 361.78 15.07 5.45 5.45 Total: -1.00 -30.39 361.78 -8.80 -39.19 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -8.65 Total: -2.00 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -0.18 Total: 2.01 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.47 Total: -50.71 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.39 -8.80 -39.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189271303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.883 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds