Wall clock time and date at job start Tue Mar 31 2020 06:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46902 * 2 1 4 4 C 1.53001 * 109.47015 * 179.97438 * 3 2 1 5 5 H 1.09009 * 109.46894 * 55.00479 * 4 3 2 6 6 C 1.52992 * 109.47666 * 295.00237 * 4 3 2 7 7 C 1.53005 * 109.47039 * 174.99944 * 4 3 2 8 8 C 1.50703 * 109.47026 * 185.00286 * 7 4 3 9 9 O 1.21280 * 119.99918 * 0.02562 * 8 7 4 10 10 N 1.34777 * 120.00024 * 180.02562 * 8 7 4 11 11 C 1.47025 * 125.64668 * 359.69530 * 10 8 7 12 12 C 1.54336 * 107.26698 * 178.85078 * 11 10 8 13 13 C 1.55164 * 103.01657 * 338.13811 * 12 11 10 14 14 H 1.08998 * 111.00565 * 277.23407 * 13 12 11 15 15 N 1.46498 * 111.03421 * 153.39657 * 13 12 11 16 16 C 1.46498 * 120.00041 * 307.78456 * 15 13 12 17 17 C 1.36937 * 119.99825 * 127.78365 * 15 13 12 18 18 H 1.08001 * 120.00072 * 23.26254 * 17 15 13 19 19 C 1.38813 * 119.99842 * 203.25943 * 17 15 13 20 20 N 1.31614 * 120.00036 * 13.82443 * 19 17 15 21 21 Si 1.86804 * 119.99833 * 193.81949 * 19 17 15 22 22 H 1.48497 * 109.46895 * 90.00155 * 21 19 17 23 23 H 1.48499 * 109.47139 * 210.00245 * 21 19 17 24 24 H 1.48501 * 109.47200 * 330.00339 * 21 19 17 25 25 C 1.47417 * 125.65113 * 180.02562 * 10 8 7 26 26 H 1.08991 * 109.47217 * 299.99779 * 1 2 3 27 27 H 1.08997 * 109.46746 * 60.00134 * 1 2 3 28 28 H 1.09005 * 109.46681 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47258 * 119.99752 * 2 1 3 30 30 H 1.09003 * 109.47640 * 240.00151 * 2 1 3 31 31 H 1.08997 * 109.47311 * 299.99521 * 3 2 1 32 32 H 1.09000 * 109.47227 * 60.00028 * 3 2 1 33 33 H 1.08999 * 109.47287 * 300.00235 * 6 4 3 34 34 H 1.09001 * 109.47077 * 59.99801 * 6 4 3 35 35 H 1.09001 * 109.47777 * 179.97438 * 6 4 3 36 36 H 1.09000 * 109.47106 * 304.99900 * 7 4 3 37 37 H 1.09000 * 109.46947 * 65.00148 * 7 4 3 38 38 H 1.09010 * 109.88040 * 298.39379 * 11 10 8 39 39 H 1.08997 * 109.88453 * 59.55572 * 11 10 8 40 40 H 1.08996 * 110.84720 * 219.67335 * 12 11 10 41 41 H 1.09000 * 110.66553 * 96.51899 * 12 11 10 42 42 H 1.08999 * 109.47013 * 95.16459 * 16 15 13 43 43 H 1.09000 * 109.46921 * 215.16088 * 16 15 13 44 44 H 1.08997 * 109.47434 * 335.15761 * 16 15 13 45 45 H 0.97001 * 120.00219 * 180.02562 * 20 19 17 46 46 H 1.09009 * 110.36528 * 322.93048 * 25 10 8 47 47 H 1.09001 * 110.36754 * 85.25160 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8530 -0.8411 6 6 4.0795 0.8331 1.3082 7 6 4.0800 2.8796 -0.1251 8 6 5.5820 2.8706 -0.2481 9 8 6.1850 1.8184 -0.2367 10 7 6.2550 4.0318 -0.3706 11 6 5.6520 5.3722 -0.4050 12 6 6.8053 6.3905 -0.5264 13 6 8.0283 5.5987 0.0073 14 1 8.0678 5.6280 1.0962 15 7 9.2751 6.1019 -0.5743 16 6 9.4059 6.2307 -2.0277 17 6 10.3184 6.4521 0.2407 18 1 10.3938 6.0311 1.2324 19 6 11.2791 7.3481 -0.2078 20 7 11.0563 8.0655 -1.2886 21 14 12.8880 7.5357 0.7225 22 1 13.8865 6.5783 0.1826 23 1 13.3943 8.9224 0.5613 24 1 12.6623 7.2555 2.1633 25 6 7.7173 4.1680 -0.4992 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.7159 1.4226 2.1498 34 1 3.7162 -0.1906 1.3977 35 1 5.1695 0.8327 1.3084 36 1 3.6457 3.3431 -1.0110 37 1 3.7912 3.4463 0.7601 38 1 4.9873 5.4578 -1.2647 39 1 5.0962 5.5524 0.5152 40 1 6.6147 7.2681 0.0913 41 1 6.9564 6.6783 -1.5668 42 1 9.1628 7.2507 -2.3254 43 1 10.4298 6.0004 -2.3222 44 1 8.7224 5.5367 -2.5169 45 1 11.7277 8.6913 -1.6022 46 1 8.2232 3.4277 0.1208 47 1 8.0181 4.0605 -1.5414 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189271304.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:55 Heat of formation + Delta-G solvation = -35.579600 kcal Electronic energy + Delta-G solvation = -22749.725265 eV Core-core repulsion = 19546.348303 eV Total energy + Delta-G solvation = -3203.376962 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.93137 -37.86557 -36.54711 -34.79657 -32.84277 -31.65917 -29.83538 -28.69024 -27.13320 -26.72031 -26.05001 -23.63654 -22.34828 -21.92969 -20.21882 -19.30527 -18.74784 -17.06348 -16.85258 -16.08509 -15.61479 -15.12032 -14.97922 -14.38112 -14.13496 -13.67584 -13.64203 -13.38354 -13.26624 -12.66617 -12.63997 -12.49219 -12.37753 -12.02395 -11.92800 -11.69731 -11.63755 -11.32794 -11.10660 -10.95419 -10.82770 -10.80998 -10.68519 -10.58301 -10.51002 -10.48504 -10.24905 -9.90835 -9.86208 -9.44950 -8.60967 -8.30097 -6.82038 -5.78043 -3.25723 2.86663 3.24981 3.36680 3.43543 3.44451 4.44943 4.51173 4.63232 4.70220 4.93779 4.96110 5.03197 5.08752 5.27026 5.29039 5.37135 5.42079 5.50329 5.52253 5.55989 5.58810 5.64275 5.69977 5.76333 5.78048 5.82448 5.90725 5.98764 6.00261 6.02990 6.12024 6.30295 6.32322 6.38881 6.45394 6.57462 6.65049 6.75412 6.87427 7.31549 7.67000 7.76677 7.84246 8.33219 8.43144 9.17076 9.79475 10.28229 11.26410 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043853 B = 0.002905 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.348241 B = 9637.072319 C = 9909.448815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.076 4.076 5 H 0.077 0.923 6 C -0.154 4.154 7 C -0.132 4.132 8 C 0.523 3.477 9 O -0.546 6.546 10 N -0.615 5.615 11 C 0.103 3.897 12 C -0.151 4.151 13 C 0.173 3.827 14 H 0.077 0.923 15 N -0.585 5.585 16 C 0.159 3.841 17 C -0.260 4.260 18 H 0.070 0.930 19 C 0.005 3.995 20 N -0.904 5.904 21 Si 0.907 3.093 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.085 3.915 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.041 0.959 44 H 0.002 0.998 45 H 0.253 0.747 46 H 0.071 0.929 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.073 -9.430 1.660 21.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.095 4.095 5 H 0.095 0.905 6 C -0.211 4.211 7 C -0.172 4.172 8 C 0.312 3.688 9 O -0.424 6.424 10 N -0.349 5.349 11 C -0.020 4.020 12 C -0.191 4.191 13 C 0.063 3.937 14 H 0.096 0.904 15 N -0.306 5.306 16 C 0.014 3.986 17 C -0.390 4.390 18 H 0.088 0.912 19 C -0.194 4.194 20 N -0.549 5.549 21 Si 0.737 3.263 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.040 4.040 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.020 0.980 45 H 0.063 0.937 46 H 0.089 0.911 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.639 -9.902 1.581 21.165 hybrid contribution 0.828 0.394 0.323 0.972 sum -17.811 -9.508 1.904 20.280 Atomic orbital electron populations 1.21782 0.96124 1.01410 1.01668 1.21575 0.95465 0.97059 1.02284 1.21680 0.94813 0.96873 1.01889 1.20905 0.94261 0.94428 0.99869 0.90487 1.21989 1.03285 0.99966 0.95832 1.21731 0.92286 0.99331 1.03859 1.20314 0.89716 0.82401 0.76340 1.90649 1.70478 1.30211 1.51055 1.48561 1.08847 1.05828 1.71664 1.22048 0.96881 0.82485 1.00624 1.23209 0.95234 0.97600 1.03105 1.21415 0.86007 0.89377 0.96939 0.90439 1.43814 1.09934 1.74318 1.02493 1.20809 0.98087 0.97414 0.82247 1.19224 1.00977 1.20344 0.98433 0.91247 1.25033 0.99928 0.96312 0.98138 1.70066 1.33947 1.25776 1.25083 0.86223 0.83784 0.76943 0.79392 1.21407 1.21732 1.20416 1.22999 0.78570 1.00760 1.01657 0.92849 0.92870 0.92960 0.91688 0.92059 0.92067 0.91982 0.93515 0.92908 0.90607 0.89300 0.89206 0.92136 0.91921 0.90517 0.90551 0.94765 0.94002 0.97989 0.93656 0.91081 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.13 -0.98 5.69 -26.73 -0.15 -1.14 16 3 C -0.11 -0.94 4.68 -26.73 -0.13 -1.07 16 4 C -0.08 -0.80 2.04 -90.62 -0.18 -0.98 16 5 H 0.08 0.93 7.96 -51.92 -0.41 0.52 16 6 C -0.15 -1.73 8.69 37.15 0.32 -1.41 16 7 C -0.13 -1.44 4.37 -27.88 -0.12 -1.56 16 8 C 0.52 8.07 7.57 -10.98 -0.08 7.98 16 9 O -0.55 -10.24 14.22 5.56 0.08 -10.16 16 10 N -0.61 -9.70 3.33 -170.50 -0.57 -10.27 16 11 C 0.10 1.36 6.49 -3.06 -0.02 1.34 16 12 C -0.15 -2.48 6.50 -24.89 -0.16 -2.64 16 13 C 0.17 3.43 3.54 -65.77 -0.23 3.20 16 14 H 0.08 1.56 7.96 -51.93 -0.41 1.15 16 15 N -0.59 -14.23 2.96 -171.02 -0.51 -14.73 16 16 C 0.16 3.79 7.57 59.85 0.45 4.25 16 17 C -0.26 -7.01 9.60 -15.06 -0.14 -7.15 16 18 H 0.07 1.84 7.87 -52.49 -0.41 1.42 16 19 C 0.00 0.13 5.08 -17.43 -0.09 0.04 16 20 N -0.90 -25.81 10.77 55.49 0.60 -25.21 16 21 Si 0.91 21.61 29.58 -169.99 -5.03 16.58 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.08 1.58 6.46 -2.52 -0.02 1.56 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.52 6.56 -51.93 -0.34 0.18 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.53 6.56 -51.93 -0.34 0.19 16 35 H 0.08 1.08 5.95 -51.93 -0.31 0.77 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.08 1.33 7.00 -51.93 -0.36 0.97 16 42 H 0.03 0.88 7.33 -51.93 -0.38 0.49 16 43 H 0.04 1.08 7.38 -51.93 -0.38 0.70 16 44 H 0.00 0.03 6.38 -51.93 -0.33 -0.30 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.07 1.42 8.04 -51.92 -0.42 1.00 16 47 H 0.07 1.30 6.42 -51.93 -0.33 0.97 16 LS Contribution 361.78 15.07 5.45 5.45 Total: -1.00 -30.03 361.78 -8.81 -38.83 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -8.65 Total: -2.26 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -0.19 Total: 1.77 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: -0.47 Total: -50.21 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.03 -8.81 -38.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189271304.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.251 kcal (2) G-P(sol) polarization free energy of solvation -30.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds