Wall clock time and date at job start Tue Mar 31 2020 05:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47091 * 2 1 4 4 C 1.52998 * 109.47403 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47161 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.46978 * 304.99858 * 5 4 3 7 7 C 1.52998 * 109.47184 * 65.00282 * 5 4 3 8 8 C 1.50697 * 109.46982 * 185.00178 * 5 4 3 9 9 O 1.21287 * 120.00257 * 339.68559 * 8 5 4 10 10 N 1.34784 * 120.00122 * 159.40956 * 8 5 4 11 11 C 1.47022 * 125.64671 * 355.53414 * 10 8 5 12 12 C 1.54319 * 107.26922 * 181.02470 * 11 10 8 13 13 C 1.55155 * 102.94356 * 22.19349 * 12 11 10 14 14 H 1.08999 * 111.00263 * 82.61296 * 13 12 11 15 15 N 1.46507 * 111.00232 * 206.42325 * 13 12 11 16 16 C 1.46497 * 119.99892 * 58.54957 * 15 13 12 17 17 C 1.36932 * 119.99663 * 238.54580 * 15 13 12 18 18 H 1.08005 * 120.00630 * 21.60937 * 17 15 13 19 19 C 1.38811 * 119.99712 * 201.60273 * 17 15 13 20 20 N 1.31615 * 120.00235 * 12.22695 * 19 17 15 21 21 Si 1.86809 * 120.00069 * 192.22056 * 19 17 15 22 22 H 1.48502 * 109.46861 * 60.00384 * 21 19 17 23 23 H 1.48500 * 109.47151 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46940 * 300.00268 * 21 19 17 25 25 C 1.47424 * 125.64607 * 175.22941 * 10 8 5 26 26 H 1.08991 * 109.47089 * 59.99973 * 1 2 3 27 27 H 1.09006 * 109.46767 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46903 * 299.99638 * 1 2 3 29 29 H 1.09006 * 109.47052 * 240.00018 * 2 1 3 30 30 H 1.09002 * 109.47346 * 119.99604 * 2 1 3 31 31 H 1.09006 * 109.47158 * 60.00082 * 3 2 1 32 32 H 1.09006 * 109.46971 * 300.00424 * 3 2 1 33 33 H 1.09006 * 109.46829 * 59.99964 * 4 3 2 34 34 H 1.08995 * 109.47214 * 300.00624 * 4 3 2 35 35 H 1.08995 * 109.46955 * 292.25577 * 7 5 4 36 36 H 1.08997 * 109.46957 * 52.25631 * 7 5 4 37 37 H 1.09000 * 109.47238 * 172.25474 * 7 5 4 38 38 H 1.09005 * 109.88085 * 300.44188 * 11 10 8 39 39 H 1.08994 * 109.87989 * 61.60409 * 11 10 8 40 40 H 1.09003 * 110.72164 * 140.56177 * 12 11 10 41 41 H 1.09004 * 110.72050 * 263.65078 * 12 11 10 42 42 H 1.08997 * 109.47189 * 94.73901 * 16 15 13 43 43 H 1.09001 * 109.46924 * 214.74045 * 16 15 13 44 44 H 1.08999 * 109.47155 * 334.73118 * 16 15 13 45 45 H 0.96998 * 120.00371 * 179.97438 * 20 19 17 46 46 H 1.09003 * 110.36603 * 274.74082 * 25 10 8 47 47 H 1.08996 * 110.36941 * 37.06908 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6456 3.4236 -0.8423 7 6 3.6747 3.5699 1.3068 8 6 5.5818 2.8868 -0.1232 9 8 6.2150 1.8926 0.1624 10 7 6.2212 3.9916 -0.5562 11 6 5.5760 5.2257 -1.0276 12 6 6.6986 6.1998 -1.4427 13 6 7.8975 5.2531 -1.7141 14 1 7.8406 4.8282 -2.7163 15 7 9.1714 5.9482 -1.5130 16 6 9.4804 6.5495 -0.2134 17 6 10.0731 6.0356 -2.5398 18 1 9.7413 5.9210 -3.5612 19 6 11.4137 6.2715 -2.2679 20 7 11.8624 6.1728 -1.0345 21 14 12.5812 6.7291 -3.6526 22 1 12.1189 7.9856 -4.2949 23 1 13.9468 6.9266 -3.1038 24 1 12.6060 5.6382 -4.6598 25 6 7.6834 4.1647 -0.6296 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9289 0.8908 35 1 2.5919 3.6919 1.3324 36 1 3.9914 2.9577 2.1511 37 1 4.1521 4.5479 1.3678 38 1 4.9392 5.0069 -1.8848 39 1 4.9830 5.6638 -0.2249 40 1 6.4233 6.7426 -2.3470 41 1 6.9266 6.8930 -0.6330 42 1 10.0631 5.8471 0.3826 43 1 10.0556 7.4632 -0.3635 44 1 8.5526 6.7859 0.3074 45 1 12.7992 6.3374 -0.8445 46 1 8.0743 4.5009 0.3308 47 1 8.1614 3.2321 -0.9292 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189973686.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:45 Heat of formation + Delta-G solvation = -36.032016 kcal Electronic energy + Delta-G solvation = -22849.418935 eV Core-core repulsion = 19646.022354 eV Total energy + Delta-G solvation = -3203.396581 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.97472 -37.70202 -36.28697 -34.80488 -33.48638 -31.57026 -29.75442 -28.90701 -27.75511 -26.07906 -25.39674 -23.79254 -22.38975 -21.82460 -20.83084 -19.29510 -18.58733 -17.05891 -16.96151 -15.90100 -15.82067 -15.10120 -14.75115 -14.45989 -14.05404 -13.82086 -13.48289 -13.29621 -13.15771 -12.93569 -12.70321 -12.41868 -12.32637 -12.21638 -11.96339 -11.78551 -11.48460 -11.46828 -11.15447 -11.03870 -10.89324 -10.83383 -10.74115 -10.62363 -10.49152 -10.46201 -10.29110 -9.89778 -9.83484 -9.41602 -8.59735 -8.26837 -6.82835 -5.76611 -3.23315 2.88614 3.26293 3.37639 3.42931 3.43833 4.44434 4.50896 4.58419 4.71709 4.91620 4.94471 5.00918 5.03490 5.20011 5.27035 5.33525 5.35351 5.46051 5.50350 5.54786 5.58572 5.63225 5.71226 5.74126 5.76760 5.84100 5.88115 5.90115 5.99753 6.02269 6.04024 6.20629 6.27024 6.31890 6.39337 6.56971 6.65499 6.77939 6.87909 7.34992 7.69183 7.77471 7.87184 8.33709 8.45425 9.18336 9.80587 10.28783 11.28031 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038595 B = 0.003001 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.308212 B = 9329.295589 C = 9433.576297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.101 4.101 5 C -0.106 4.106 6 H 0.089 0.911 7 C -0.141 4.141 8 C 0.527 3.473 9 O -0.547 6.547 10 N -0.614 5.614 11 C 0.104 3.896 12 C -0.154 4.154 13 C 0.173 3.827 14 H 0.077 0.923 15 N -0.586 5.586 16 C 0.161 3.839 17 C -0.260 4.260 18 H 0.070 0.930 19 C 0.004 3.996 20 N -0.906 5.906 21 Si 0.908 3.092 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.086 3.914 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.031 0.969 43 H 0.046 0.954 44 H 0.000 1.000 45 H 0.254 0.746 46 H 0.067 0.933 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.974 -4.537 2.578 21.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.139 4.139 5 C -0.127 4.127 6 H 0.107 0.893 7 C -0.198 4.198 8 C 0.315 3.685 9 O -0.425 6.425 10 N -0.348 5.348 11 C -0.019 4.019 12 C -0.194 4.194 13 C 0.063 3.937 14 H 0.096 0.904 15 N -0.306 5.306 16 C 0.017 3.983 17 C -0.390 4.390 18 H 0.088 0.912 19 C -0.195 4.195 20 N -0.550 5.550 21 Si 0.738 3.262 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.209 1.209 25 C -0.038 4.038 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.049 0.951 43 H 0.065 0.935 44 H 0.019 0.981 45 H 0.064 0.936 46 H 0.085 0.915 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.437 -5.078 2.827 21.247 hybrid contribution 0.743 0.324 -0.658 1.044 sum -19.693 -4.754 2.169 20.375 Atomic orbital electron populations 1.21777 0.96046 1.01448 1.01689 1.21534 0.95591 0.97042 1.02193 1.21673 0.95206 0.96787 1.02061 1.21441 0.94647 0.94369 1.03458 1.21279 0.92169 0.98917 1.00384 0.89292 1.21751 1.01629 1.00579 0.95854 1.20313 0.89687 0.81728 0.76762 1.90683 1.68682 1.32560 1.50543 1.48569 1.08635 1.14095 1.63534 1.22035 0.96368 0.85216 0.98301 1.23219 0.95966 0.98235 1.02020 1.21486 0.86332 0.89667 0.96244 0.90438 1.43866 1.15008 1.60461 1.11279 1.20815 0.94112 0.97703 0.85714 1.19185 0.87632 1.45072 0.87097 0.91207 1.25045 0.96802 1.01147 0.96513 1.70064 1.14373 1.52621 1.17976 0.86283 0.80045 0.78549 0.81325 1.21011 1.21603 1.20879 1.23112 0.78375 1.01158 1.01196 0.92823 0.92931 0.92839 0.92016 0.91978 0.91736 0.92064 0.91608 0.90959 0.91468 0.92007 0.92155 0.91964 0.92101 0.90650 0.90525 0.95112 0.93532 0.98127 0.93555 0.91507 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.13 -0.99 5.93 -26.73 -0.16 -1.15 16 3 C -0.12 -0.99 4.97 -26.73 -0.13 -1.12 16 4 C -0.10 -1.11 4.06 -26.73 -0.11 -1.21 16 5 C -0.11 -1.22 2.18 -91.78 -0.20 -1.42 16 6 H 0.09 0.88 7.43 -51.93 -0.39 0.50 16 7 C -0.14 -1.38 8.75 37.16 0.32 -1.06 16 8 C 0.53 8.59 6.99 -10.98 -0.08 8.52 16 9 O -0.55 -11.12 16.37 5.55 0.09 -11.03 16 10 N -0.61 -10.04 3.32 -170.38 -0.57 -10.61 16 11 C 0.10 1.37 6.21 -3.07 -0.02 1.35 16 12 C -0.15 -2.41 6.48 -24.90 -0.16 -2.57 16 13 C 0.17 3.45 3.55 -65.66 -0.23 3.22 16 14 H 0.08 1.57 7.95 -51.93 -0.41 1.16 16 15 N -0.59 -14.28 2.96 -170.90 -0.51 -14.79 16 16 C 0.16 3.86 7.58 59.85 0.45 4.32 16 17 C -0.26 -7.01 9.63 -15.06 -0.15 -7.16 16 18 H 0.07 1.82 7.84 -52.48 -0.41 1.41 16 19 C 0.00 0.10 5.12 -17.43 -0.09 0.01 16 20 N -0.91 -26.17 10.59 55.49 0.59 -25.59 16 21 Si 0.91 21.63 29.57 -169.99 -5.03 16.60 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.09 1.69 6.49 -2.41 -0.02 1.67 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.49 6.74 -51.93 -0.35 0.14 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 35 H 0.07 0.51 6.96 -51.93 -0.36 0.15 16 36 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 37 H 0.06 0.61 7.05 -51.93 -0.37 0.24 16 38 H 0.06 0.70 7.94 -51.93 -0.41 0.29 16 39 H 0.06 0.68 7.07 -51.93 -0.37 0.32 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 1.25 6.37 -51.93 -0.33 0.92 16 42 H 0.03 0.81 7.40 -51.93 -0.38 0.43 16 43 H 0.05 1.20 7.20 -51.93 -0.37 0.83 16 44 H 0.00 0.01 6.34 -51.93 -0.33 -0.32 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.07 1.40 7.06 -51.93 -0.37 1.04 16 47 H 0.07 1.57 7.99 -51.93 -0.41 1.16 16 LS Contribution 362.97 15.07 5.47 5.47 Total: -1.00 -30.80 362.97 -8.77 -39.57 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -8.62 Total: -2.38 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -0.19 Total: 2.75 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.49 Total: -50.99 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.80 -8.77 -39.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189973686.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.538 kcal (2) G-P(sol) polarization free energy of solvation -30.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds