Wall clock time and date at job start Tue Mar 31 2020 05:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47293 * 2 1 4 4 C 1.52998 * 109.46853 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46853 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47392 * 55.00435 * 5 4 3 7 7 C 1.52999 * 109.47300 * 295.00016 * 5 4 3 8 8 C 1.50698 * 109.47079 * 175.00168 * 5 4 3 9 9 O 1.21276 * 120.00229 * 0.02562 * 8 5 4 10 10 N 1.34780 * 119.99903 * 180.02562 * 8 5 4 11 11 C 1.47429 * 125.65101 * 0.02562 * 10 8 5 12 12 C 1.54904 * 104.83127 * 155.83951 * 11 10 8 13 13 C 1.55151 * 101.58514 * 37.00955 * 12 11 10 14 14 H 1.09003 * 110.72012 * 83.03731 * 13 12 11 15 15 N 1.46504 * 110.72379 * 206.13390 * 13 12 11 16 16 C 1.46499 * 119.99742 * 58.54562 * 15 13 12 17 17 C 1.36934 * 120.00106 * 238.55090 * 15 13 12 18 18 H 1.08003 * 119.99909 * 334.75414 * 17 15 13 19 19 C 1.38815 * 120.00151 * 154.75801 * 17 15 13 20 20 N 1.31622 * 119.99508 * 4.33835 * 19 17 15 21 21 Si 1.86797 * 120.00036 * 184.33550 * 19 17 15 22 22 H 1.48506 * 109.47095 * 90.00165 * 21 19 17 23 23 H 1.48502 * 109.47024 * 209.99822 * 21 19 17 24 24 H 1.48499 * 109.47257 * 330.00226 * 21 19 17 25 25 C 1.47023 * 125.64967 * 179.97438 * 10 8 5 26 26 H 1.09001 * 109.47388 * 59.99636 * 1 2 3 27 27 H 1.09001 * 109.47492 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47393 * 300.00451 * 1 2 3 29 29 H 1.08996 * 109.47332 * 239.99931 * 2 1 3 30 30 H 1.09003 * 109.46581 * 119.99927 * 2 1 3 31 31 H 1.09003 * 109.46701 * 59.99980 * 3 2 1 32 32 H 1.08997 * 109.46856 * 300.00114 * 3 2 1 33 33 H 1.09003 * 109.47240 * 60.00609 * 4 3 2 34 34 H 1.08997 * 109.47727 * 299.99879 * 4 3 2 35 35 H 1.08991 * 109.47559 * 300.00369 * 7 5 4 36 36 H 1.09003 * 109.46843 * 60.00489 * 7 5 4 37 37 H 1.09002 * 109.47270 * 179.97438 * 7 5 4 38 38 H 1.09003 * 110.36199 * 37.00005 * 11 10 8 39 39 H 1.09001 * 110.36631 * 274.67987 * 11 10 8 40 40 H 1.09010 * 111.00163 * 278.93395 * 12 11 10 41 41 H 1.09001 * 111.00301 * 155.09263 * 12 11 10 42 42 H 1.09003 * 109.47237 * 264.51879 * 16 15 13 43 43 H 1.09002 * 109.47168 * 24.51821 * 16 15 13 44 44 H 1.09005 * 109.46989 * 144.51729 * 16 15 13 45 45 H 0.97005 * 119.99235 * 180.02562 * 20 19 17 46 46 H 1.09006 * 109.87856 * 61.67712 * 25 10 8 47 47 H 1.08996 * 109.88160 * 300.51302 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 1 3.6452 3.4244 0.8413 7 6 3.6759 3.5682 -1.3079 8 6 5.5819 2.8867 0.1244 9 8 6.1849 1.8376 0.2051 10 7 6.2548 4.0542 0.1460 11 6 5.6506 5.3961 0.0571 12 6 6.6789 6.3393 0.7298 13 6 8.0225 5.7125 0.2723 14 1 8.2903 6.0604 -0.7255 15 7 9.0892 6.0174 1.2291 16 6 8.9576 5.6049 2.6287 17 6 10.2091 6.6879 0.8153 18 1 10.5153 6.6408 -0.2194 19 6 10.9510 7.4280 1.7256 20 7 10.6280 7.4166 3.0016 21 14 12.4078 8.4400 1.1399 22 1 11.9491 9.8060 0.7805 23 1 13.4185 8.5266 2.2244 24 1 13.0138 7.7921 -0.0510 25 6 7.7131 4.2007 0.2631 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8892 34 1 3.9330 0.9287 0.8908 35 1 4.1107 3.0287 -2.1492 36 1 2.5895 3.5669 -1.3978 37 1 4.0388 4.5960 -1.3082 38 1 4.7032 5.4219 0.5956 39 1 5.5031 5.6774 -0.9856 40 1 6.5839 6.3104 1.8153 41 1 6.5763 7.3585 0.3572 42 1 8.5606 6.4331 3.2157 43 1 8.2788 4.7546 2.6946 44 1 9.9355 5.3201 3.0170 45 1 11.1462 7.9342 3.6376 46 1 8.2027 3.7274 -0.5881 47 1 8.0579 3.7460 1.1917 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189973688.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:54 Heat of formation + Delta-G solvation = -31.266834 kcal Electronic energy + Delta-G solvation = -22916.165347 eV Core-core repulsion = 19712.975400 eV Total energy + Delta-G solvation = -3203.189947 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.03983 -37.69207 -36.30524 -34.82615 -33.51665 -31.55212 -29.76159 -28.99795 -27.56895 -26.06256 -25.47322 -23.78210 -22.35613 -21.84491 -20.82112 -19.22384 -18.79745 -17.09558 -16.79499 -15.88654 -15.75913 -15.41276 -14.85212 -14.36953 -13.89932 -13.73678 -13.56038 -13.33121 -13.20908 -13.01343 -12.61790 -12.51188 -12.31133 -12.13345 -11.91449 -11.68839 -11.51852 -11.28219 -11.11142 -11.06803 -10.87007 -10.84181 -10.72554 -10.60740 -10.55877 -10.37112 -10.23791 -9.90759 -9.89017 -9.44597 -8.54647 -8.27874 -6.80740 -5.77765 -3.25550 2.88326 3.25570 3.35857 3.42435 3.43573 4.44114 4.49372 4.57837 4.71559 4.92537 4.95052 4.99323 5.05368 5.22387 5.25935 5.28021 5.41658 5.46375 5.52106 5.54514 5.56699 5.62455 5.70720 5.74443 5.77307 5.83072 5.89036 5.90600 6.01286 6.02591 6.03701 6.21577 6.28650 6.32818 6.40970 6.58139 6.68090 6.85618 6.88287 7.46891 7.72826 7.82429 7.85372 8.36530 8.43992 9.20520 9.80618 10.30337 11.26670 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046735 B = 0.002968 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.980610 B = 9431.052068 C = 9536.076670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.100 4.100 5 C -0.106 4.106 6 H 0.093 0.907 7 C -0.152 4.152 8 C 0.526 3.474 9 O -0.549 6.549 10 N -0.611 5.611 11 C 0.100 3.900 12 C -0.152 4.152 13 C 0.174 3.826 14 H 0.078 0.922 15 N -0.591 5.591 16 C 0.164 3.836 17 C -0.259 4.259 18 H 0.070 0.930 19 C 0.007 3.993 20 N -0.907 5.907 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.085 3.915 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.026 0.974 43 H -0.005 1.005 44 H 0.054 0.946 45 H 0.253 0.747 46 H 0.058 0.942 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.618 -7.523 -6.513 21.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.138 4.138 5 C -0.127 4.127 6 H 0.111 0.889 7 C -0.209 4.209 8 C 0.315 3.685 9 O -0.427 6.427 10 N -0.345 5.345 11 C -0.023 4.023 12 C -0.193 4.193 13 C 0.063 3.937 14 H 0.096 0.904 15 N -0.311 5.311 16 C 0.019 3.981 17 C -0.389 4.389 18 H 0.088 0.912 19 C -0.192 4.192 20 N -0.552 5.552 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.205 1.205 25 C -0.039 4.039 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.045 0.955 43 H 0.013 0.987 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.077 0.923 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.187 -8.064 -6.295 20.867 hybrid contribution 0.793 0.716 -0.143 1.078 sum -17.394 -7.349 -6.438 19.950 Atomic orbital electron populations 1.21778 0.96052 1.01440 1.01699 1.21527 0.95582 0.97046 1.02176 1.21688 0.95269 0.96782 1.02064 1.21406 0.94520 0.94349 1.03487 1.21259 0.92109 0.98992 1.00373 0.88862 1.21961 1.01893 1.01157 0.95886 1.20319 0.89506 0.82386 0.76318 1.90675 1.70405 1.30878 1.50704 1.48519 1.08623 1.05625 1.71711 1.22439 0.97184 0.82503 1.00221 1.23401 0.96215 0.98348 1.01333 1.21295 0.87924 0.89835 0.94642 0.90401 1.43874 1.16602 1.65372 1.05293 1.20885 0.98843 0.94204 0.84119 1.19230 1.01772 1.22762 0.95094 0.91211 1.25160 0.99829 0.98411 0.95772 1.70104 1.41095 1.43172 1.00857 0.86219 0.81757 0.80618 0.77746 1.21337 1.21679 1.20484 1.22753 0.78778 1.00501 1.01863 0.92853 0.92936 0.92807 0.92030 0.91987 0.92039 0.91743 0.91398 0.91166 0.92261 0.91492 0.91393 0.91343 0.91501 0.90657 0.90421 0.95528 0.98662 0.92736 0.93652 0.92312 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.13 -0.99 5.93 -26.73 -0.16 -1.15 16 3 C -0.12 -1.00 4.97 -26.73 -0.13 -1.13 16 4 C -0.10 -1.09 4.03 -26.73 -0.11 -1.20 16 5 C -0.11 -1.21 2.07 -91.77 -0.19 -1.40 16 6 H 0.09 0.96 7.84 -51.93 -0.41 0.55 16 7 C -0.15 -1.41 8.76 37.16 0.33 -1.09 16 8 C 0.53 8.48 7.21 -10.99 -0.08 8.40 16 9 O -0.55 -10.95 16.25 5.56 0.09 -10.86 16 10 N -0.61 -9.84 3.32 -170.52 -0.57 -10.40 16 11 C 0.10 1.32 5.14 -2.53 -0.01 1.30 16 12 C -0.15 -2.51 6.65 -24.59 -0.16 -2.68 16 13 C 0.17 3.42 3.45 -66.10 -0.23 3.19 16 14 H 0.08 1.50 7.94 -51.93 -0.41 1.09 16 15 N -0.59 -14.47 2.94 -171.38 -0.50 -14.98 16 16 C 0.16 4.04 7.63 59.85 0.46 4.50 16 17 C -0.26 -6.96 9.61 -15.06 -0.14 -7.10 16 18 H 0.07 1.82 7.82 -52.48 -0.41 1.41 16 19 C 0.01 0.18 5.38 -17.43 -0.09 0.08 16 20 N -0.91 -25.96 10.11 55.49 0.56 -25.40 16 21 Si 0.91 21.48 29.56 -169.99 -5.02 16.46 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 25 C 0.09 1.61 6.39 -3.07 -0.02 1.59 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.49 6.56 -51.93 -0.34 0.14 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.87 7.96 -51.93 -0.41 0.46 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.50 6.56 -51.93 -0.34 0.15 16 37 H 0.07 0.61 5.00 -51.93 -0.26 0.35 16 38 H 0.07 0.76 7.36 -51.93 -0.38 0.37 16 39 H 0.07 0.76 7.08 -51.93 -0.37 0.40 16 40 H 0.07 1.37 7.28 -51.92 -0.38 0.99 16 41 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.03 0.70 7.45 -51.93 -0.39 0.31 16 43 H 0.00 -0.11 6.27 -51.93 -0.33 -0.44 16 44 H 0.05 1.48 7.01 -51.93 -0.36 1.11 16 45 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.07 1.55 6.11 -51.93 -0.32 1.23 16 LS Contribution 358.63 15.07 5.40 5.40 Total: -1.00 -30.60 358.63 -8.69 -39.29 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -8.47 Total: -2.17 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -0.18 Total: 2.65 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.51 Total: -50.78 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.60 -8.69 -39.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189973688.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.019 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds