Wall clock time and date at job start Tue Mar 31 2020 05:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52987 * 1 3 3 C 1.53002 * 109.47447 * 2 1 4 4 C 1.53004 * 109.47282 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46650 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47472 * 54.99692 * 5 4 3 7 7 C 1.53001 * 109.47345 * 294.99656 * 5 4 3 8 8 C 1.50704 * 109.46843 * 174.99913 * 5 4 3 9 9 O 1.21285 * 119.99662 * 34.45276 * 8 5 4 10 10 N 1.34772 * 120.00247 * 214.44682 * 8 5 4 11 11 C 1.47429 * 125.64734 * 355.07517 * 10 8 5 12 12 C 1.54900 * 104.83249 * 204.08846 * 11 10 8 13 13 C 1.55161 * 101.58457 * 322.98981 * 12 11 10 14 14 H 1.08995 * 110.87046 * 277.06946 * 13 12 11 15 15 N 1.46495 * 110.71891 * 153.86105 * 13 12 11 16 16 C 1.46498 * 120.00695 * 306.47680 * 15 13 12 17 17 C 1.36941 * 119.99598 * 126.48412 * 15 13 12 18 18 H 1.08001 * 119.99671 * 326.77286 * 17 15 13 19 19 C 1.38811 * 120.00215 * 147.05312 * 17 15 13 20 20 N 1.31623 * 120.00235 * 162.19044 * 19 17 15 21 21 Si 1.86799 * 119.99932 * 342.19719 * 19 17 15 22 22 H 1.48503 * 109.47572 * 87.10717 * 21 19 17 23 23 H 1.48501 * 109.46932 * 207.10638 * 21 19 17 24 24 H 1.48507 * 109.46841 * 327.10372 * 21 19 17 25 25 C 1.47022 * 125.64894 * 175.02942 * 10 8 5 26 26 H 1.09000 * 109.47224 * 299.99760 * 1 2 3 27 27 H 1.09001 * 109.47548 * 59.99784 * 1 2 3 28 28 H 1.09000 * 109.47572 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47464 * 239.99756 * 2 1 3 30 30 H 1.09001 * 109.47548 * 120.00216 * 2 1 3 31 31 H 1.09000 * 109.46713 * 59.99926 * 3 2 1 32 32 H 1.09007 * 109.46758 * 300.00150 * 3 2 1 33 33 H 1.09001 * 109.46957 * 59.99973 * 4 3 2 34 34 H 1.08997 * 109.46684 * 299.99779 * 4 3 2 35 35 H 1.08998 * 109.47709 * 185.92560 * 7 5 4 36 36 H 1.09006 * 109.46894 * 305.92427 * 7 5 4 37 37 H 1.09004 * 109.46949 * 65.91745 * 7 5 4 38 38 H 1.09000 * 110.36293 * 322.93055 * 11 10 8 39 39 H 1.09000 * 110.36738 * 85.24936 * 11 10 8 40 40 H 1.08997 * 111.00951 * 204.91487 * 12 11 10 41 41 H 1.09001 * 111.00580 * 81.06434 * 12 11 10 42 42 H 1.08994 * 109.47310 * 275.16301 * 16 15 13 43 43 H 1.09000 * 109.46770 * 35.16160 * 16 15 13 44 44 H 1.09001 * 109.47193 * 155.15704 * 16 15 13 45 45 H 0.96999 * 119.99887 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.88092 * 59.56490 * 25 10 8 47 47 H 1.08998 * 110.00848 * 298.46737 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6456 3.4235 0.8422 7 6 3.6747 3.5698 -1.3068 8 6 5.5819 2.8867 0.1232 9 8 6.2338 2.0047 -0.3945 10 7 6.2007 3.8684 0.8086 11 6 5.5450 5.0503 1.3973 12 6 6.6650 6.1155 1.4992 13 6 7.8911 5.2432 1.8777 14 1 7.9145 5.0508 2.9503 15 7 9.1355 5.8804 1.4399 16 6 9.2954 6.2930 0.0434 17 6 10.1493 6.0903 2.3362 18 1 9.9205 6.3093 3.3687 19 6 11.4709 6.0274 1.9165 20 7 12.4220 6.5591 2.6549 21 14 11.8997 5.1884 0.3036 22 1 11.7889 6.1666 -0.8082 23 1 13.2895 4.6695 0.3697 24 1 10.9615 4.0618 0.0670 25 6 7.6413 3.9374 1.0940 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9329 0.9287 -0.8909 34 1 3.9336 0.9285 0.8891 35 1 4.1261 4.5608 -1.3529 36 1 4.0198 2.9737 -2.1516 37 1 2.5893 3.6626 -1.3470 38 1 4.7441 5.4028 0.7473 39 1 5.1549 4.8141 2.3873 40 1 6.4446 6.8406 2.2826 41 1 6.8199 6.6125 0.5415 42 1 9.6408 5.4455 -0.5486 43 1 8.3381 6.6410 -0.3445 44 1 10.0262 7.0995 -0.0158 45 1 13.3456 6.5147 2.3617 46 1 8.2038 3.9519 0.1605 47 1 7.9438 3.0804 1.6957 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189973689.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:58 Heat of formation + Delta-G solvation = -33.848425 kcal Electronic energy + Delta-G solvation = -23025.213830 eV Core-core repulsion = 19821.911937 eV Total energy + Delta-G solvation = -3203.301893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.07776 -37.89378 -36.37375 -34.98346 -33.52555 -31.78611 -30.20428 -29.00426 -28.17758 -26.26413 -25.47342 -23.97326 -22.44632 -21.97001 -20.93972 -19.32335 -18.71649 -17.12530 -17.08227 -16.09059 -15.86034 -15.26388 -15.08865 -14.41796 -14.31279 -13.95934 -13.71496 -13.43657 -13.34432 -12.86535 -12.81310 -12.68529 -12.47047 -12.28810 -12.03869 -11.94748 -11.88650 -11.57430 -11.48678 -11.23779 -11.11024 -10.97732 -10.88398 -10.79926 -10.67722 -10.36868 -10.26749 -9.99196 -9.61226 -9.48539 -8.64810 -8.37483 -6.99434 -6.02391 -3.47122 2.79565 3.16574 3.33411 3.47990 3.53014 4.41592 4.49897 4.52202 4.66091 4.79289 4.85066 4.88805 4.97480 5.01991 5.14072 5.23963 5.27531 5.35823 5.40224 5.42312 5.49513 5.53850 5.62016 5.65671 5.70974 5.72395 5.76980 5.82274 5.86044 5.95019 5.97422 6.10370 6.14089 6.19507 6.21346 6.32873 6.36431 6.50209 6.63416 6.65285 6.78698 7.76153 7.94278 8.28465 8.36570 8.87387 9.64423 9.99359 11.13050 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035086 B = 0.003370 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.855874 B = 8307.768472 C = 8552.054874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.103 4.103 5 C -0.105 4.105 6 H 0.088 0.912 7 C -0.140 4.140 8 C 0.527 3.473 9 O -0.546 6.546 10 N -0.614 5.614 11 C 0.101 3.899 12 C -0.152 4.152 13 C 0.173 3.827 14 H 0.088 0.912 15 N -0.595 5.595 16 C 0.101 3.899 17 C -0.272 4.272 18 H 0.085 0.915 19 C 0.034 3.966 20 N -0.905 5.905 21 Si 0.889 3.111 22 H -0.286 1.286 23 H -0.303 1.303 24 H -0.273 1.273 25 C 0.083 3.917 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.008 0.992 43 H 0.035 0.965 44 H 0.061 0.939 45 H 0.264 0.736 46 H 0.067 0.933 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.079 -6.108 -4.882 24.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.141 4.141 5 C -0.127 4.127 6 H 0.106 0.894 7 C -0.198 4.198 8 C 0.315 3.685 9 O -0.424 6.424 10 N -0.348 5.348 11 C -0.022 4.022 12 C -0.192 4.192 13 C 0.063 3.937 14 H 0.106 0.894 15 N -0.317 5.317 16 C -0.043 4.043 17 C -0.400 4.400 18 H 0.103 0.897 19 C -0.167 4.167 20 N -0.546 5.546 21 Si 0.719 3.281 22 H -0.213 1.213 23 H -0.231 1.231 24 H -0.198 1.198 25 C -0.042 4.042 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.026 0.974 43 H 0.053 0.947 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.528 -6.580 -5.168 24.032 hybrid contribution 0.479 -0.459 -0.882 1.104 sum -22.050 -7.039 -6.050 23.923 Atomic orbital electron populations 1.21774 0.95988 1.01488 1.01716 1.21531 0.95657 0.96991 1.02190 1.21667 0.95014 0.96851 1.02140 1.21463 0.94948 0.94286 1.03363 1.21282 0.91957 0.98952 1.00470 0.89395 1.21746 1.01643 1.00460 0.95914 1.20359 0.89852 0.80666 0.77625 1.90685 1.67499 1.37168 1.47005 1.48612 1.09637 1.22694 1.53903 1.22335 0.96302 0.85654 0.97943 1.23284 0.95402 0.97480 1.03039 1.21483 0.86096 0.88451 0.97655 0.89352 1.44099 1.14339 1.66815 1.06427 1.21383 0.99431 0.97658 0.85837 1.18865 0.84200 1.43833 0.93122 0.89700 1.25407 0.95620 0.98045 0.97612 1.69807 1.00611 1.44933 1.39274 0.86887 0.76364 0.80809 0.84004 1.21301 1.23080 1.19821 1.22857 0.79539 1.00752 1.01025 0.92802 0.92815 0.92903 0.91974 0.92023 0.91995 0.91664 0.90797 0.91769 0.92314 0.91859 0.91390 0.91163 0.91458 0.89956 0.90479 0.97378 0.94659 0.92083 0.92574 0.91481 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.15 0.37 -0.60 16 2 C -0.13 -0.94 5.93 -26.74 -0.16 -1.10 16 3 C -0.12 -0.93 4.97 -26.73 -0.13 -1.06 16 4 C -0.10 -1.07 4.25 -26.73 -0.11 -1.18 16 5 C -0.11 -1.16 2.14 -91.77 -0.20 -1.35 16 6 H 0.09 0.81 7.15 -51.93 -0.37 0.44 16 7 C -0.14 -1.33 8.78 37.16 0.33 -1.01 16 8 C 0.53 8.32 6.85 -10.99 -0.08 8.24 16 9 O -0.55 -10.90 16.70 5.55 0.09 -10.81 16 10 N -0.61 -9.61 3.33 -170.52 -0.57 -10.18 16 11 C 0.10 1.22 6.17 -2.53 -0.02 1.21 16 12 C -0.15 -2.20 6.61 -24.59 -0.16 -2.37 16 13 C 0.17 3.23 3.45 -66.09 -0.23 3.00 16 14 H 0.09 1.66 7.95 -51.93 -0.41 1.24 16 15 N -0.60 -13.71 2.60 -171.39 -0.45 -14.16 16 16 C 0.10 2.20 7.50 59.85 0.45 2.65 16 17 C -0.27 -7.41 9.92 -15.06 -0.15 -7.56 16 18 H 0.09 2.45 8.06 -52.49 -0.42 2.03 16 19 C 0.03 0.96 5.25 -17.43 -0.09 0.87 16 20 N -0.90 -27.41 13.97 55.49 0.78 -26.64 16 21 Si 0.89 22.82 24.12 -169.99 -4.10 18.72 16 22 H -0.29 -7.07 6.78 56.52 0.38 -6.69 16 23 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 24 H -0.27 -7.06 6.80 56.52 0.38 -6.67 16 25 C 0.08 1.56 6.51 -3.06 -0.02 1.54 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.47 6.70 -51.93 -0.35 0.12 16 33 H 0.07 0.87 8.02 -51.93 -0.42 0.45 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.57 7.93 -51.93 -0.41 0.16 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.49 6.86 -51.93 -0.36 0.14 16 38 H 0.07 0.69 7.47 -51.93 -0.39 0.30 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.08 1.16 6.00 -51.93 -0.31 0.85 16 42 H 0.01 0.19 5.08 -51.93 -0.26 -0.07 16 43 H 0.04 0.65 6.00 -51.93 -0.31 0.34 16 44 H 0.06 1.40 6.56 -51.93 -0.34 1.06 16 45 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 46 H 0.07 1.44 6.88 -51.93 -0.36 1.09 16 47 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 358.19 15.07 5.40 5.40 Total: -1.00 -32.13 358.19 -7.58 -39.71 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -8.53 Total: -3.32 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -0.20 Total: 1.28 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.24 Total: -50.98 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.10 Total: 18.72 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.13 -7.58 -39.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189973689.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.859 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds