Wall clock time and date at job start Tue Mar 31 2020 06:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47224 * 2 1 4 4 C 1.53000 * 109.46887 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47033 * 180.02562 * 4 3 2 6 6 C 1.37190 * 120.00095 * 264.54361 * 5 4 3 7 7 H 1.07996 * 120.00360 * 145.52488 * 6 5 4 8 8 C 1.38878 * 119.99729 * 325.52424 * 6 5 4 9 9 N 1.31473 * 119.99965 * 338.25500 * 8 6 5 10 10 Si 1.86802 * 119.99936 * 158.25190 * 8 6 5 11 11 H 1.48503 * 109.46910 * 90.00299 * 10 8 6 12 12 H 1.48494 * 109.47276 * 210.00038 * 10 8 6 13 13 H 1.48498 * 109.47084 * 330.00244 * 10 8 6 14 14 C 1.34777 * 120.00143 * 84.54207 * 5 4 3 15 15 O 1.21584 * 119.99725 * 359.97438 * 14 5 4 16 16 N 1.34775 * 120.00238 * 179.97438 * 14 5 4 17 17 C 1.46498 * 120.00382 * 179.97438 * 16 14 5 18 18 C 1.54070 * 108.87966 * 277.98103 * 17 16 14 19 19 C 1.54067 * 112.81668 * 197.50158 * 18 17 16 20 20 C 1.50473 * 112.49826 * 318.28501 * 19 18 17 21 21 C 1.54241 * 108.52255 * 94.15217 * 20 19 18 22 22 C 1.45540 * 112.40603 * 280.00958 * 21 20 19 23 23 C 1.50468 * 108.87927 * 154.99996 * 17 16 14 24 24 H 1.09005 * 109.46963 * 299.99853 * 1 2 3 25 25 H 1.08999 * 109.47366 * 59.99454 * 1 2 3 26 26 H 1.08995 * 109.47664 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46762 * 239.99821 * 2 1 3 28 28 H 1.09005 * 109.46933 * 120.00444 * 2 1 3 29 29 H 1.09005 * 109.47031 * 60.00189 * 3 2 1 30 30 H 1.08999 * 109.47395 * 300.00528 * 3 2 1 31 31 H 1.08998 * 109.47484 * 60.00492 * 4 3 2 32 32 H 1.09004 * 109.47071 * 299.99714 * 4 3 2 33 33 H 0.97011 * 119.99913 * 180.02562 * 9 8 6 34 34 H 0.97002 * 119.99701 * 0.02562 * 16 14 5 35 35 H 1.09006 * 108.76844 * 36.48926 * 17 16 14 36 36 H 1.09000 * 108.81245 * 318.36103 * 18 17 16 37 37 H 1.08997 * 108.81554 * 76.74832 * 18 17 16 38 38 H 1.09000 * 108.87837 * 197.50248 * 19 18 17 39 39 H 1.09005 * 108.87271 * 79.05923 * 19 18 17 40 40 H 1.09000 * 109.62733 * 334.43910 * 20 19 18 41 41 H 1.09003 * 109.62432 * 213.86254 * 20 19 18 42 42 H 1.09004 * 108.89356 * 40.76209 * 21 20 19 43 43 H 1.08993 * 108.89513 * 159.35091 * 21 20 19 44 44 H 1.08996 * 108.90040 * 182.69244 * 22 21 20 45 45 H 1.09005 * 108.89486 * 301.18244 * 22 21 20 46 46 H 1.09004 * 109.62920 * 95.21949 * 23 17 16 47 47 H 1.09002 * 109.78893 * 334.73371 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.3931 3.4333 -1.1825 7 1 4.2162 4.4906 -1.3140 8 6 4.9595 2.6910 -2.2106 9 7 5.5633 1.5538 -1.9448 10 14 4.8633 3.3083 -3.9710 11 1 6.0477 4.1548 -4.2641 12 1 4.8399 2.1508 -4.9009 13 1 3.6259 4.1101 -4.1475 14 6 4.1789 3.4952 1.1622 15 8 3.8818 2.9550 2.2101 16 7 4.6287 4.7657 1.1629 17 6 4.7591 5.4960 2.4261 18 6 3.3812 6.0622 2.8192 19 6 3.4742 7.1834 3.8718 20 6 4.4766 6.8778 4.9516 21 6 5.8243 7.5208 4.5653 22 6 6.5602 6.7254 3.5936 23 6 5.7980 6.5720 2.2614 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9330 0.9287 -0.8909 32 1 3.9337 0.9284 0.8892 33 1 5.9592 1.0354 -2.6628 34 1 4.8654 5.1968 0.3267 35 1 5.0892 4.8026 3.1997 36 1 2.8959 6.4572 1.9268 37 1 2.7709 5.2538 3.2220 38 1 2.4941 7.3203 4.3288 39 1 3.7622 8.1101 3.3753 40 1 4.5986 5.7986 5.0431 41 1 4.1316 7.2918 5.8991 42 1 5.6363 8.5081 4.1433 43 1 6.4330 7.6310 5.4627 44 1 7.5192 7.2051 3.3984 45 1 6.7415 5.7356 4.0126 46 1 5.3124 7.5140 2.0068 47 1 6.4951 6.2940 1.4708 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191262843.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:41 Heat of formation + Delta-G solvation = -57.716085 kcal Electronic energy + Delta-G solvation = -23626.600172 eV Core-core repulsion = 20422.263299 eV Total energy + Delta-G solvation = -3204.336872 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.42922 -38.09716 -35.43659 -33.86676 -33.63478 -32.13388 -31.40609 -29.88894 -27.90720 -24.85354 -24.68697 -23.92143 -22.34199 -20.56600 -20.36950 -19.30104 -18.97406 -17.63287 -16.40428 -15.59787 -15.09049 -14.65611 -14.59007 -14.37152 -14.07740 -13.83233 -13.64962 -13.11220 -12.97222 -12.94891 -12.83249 -12.15053 -12.01244 -11.81979 -11.69087 -11.39686 -11.20219 -11.06446 -10.93031 -10.65664 -10.59602 -10.51867 -10.41228 -10.28492 -10.23250 -10.18797 -10.14320 -9.93179 -9.61311 -9.08266 -8.61140 -7.98446 -7.33274 -6.27515 -3.95148 3.14044 3.23924 3.27494 4.00740 4.27224 4.47771 4.74941 4.87715 5.05760 5.11793 5.36556 5.39519 5.41162 5.46761 5.55419 5.56316 5.64068 5.73868 5.77828 5.86592 5.93373 6.08540 6.15703 6.17468 6.21559 6.27281 6.28928 6.30629 6.34746 6.45646 6.48156 6.49950 6.51482 6.65230 6.75357 6.76720 6.84609 6.95392 7.21019 7.42343 7.57387 7.72654 8.04006 8.38428 8.65236 9.20941 9.89782 10.25853 10.74524 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014554 B = 0.005297 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.393673 B = 5285.149102 C = 6612.727057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.129 4.129 4 C 0.136 3.864 5 N -0.469 5.469 6 C -0.334 4.334 7 H 0.081 0.919 8 C 0.041 3.959 9 N -0.861 5.861 10 Si 0.909 3.091 11 H -0.279 1.279 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.676 3.324 15 O -0.644 6.644 16 N -0.746 5.746 17 C 0.171 3.829 18 C -0.127 4.127 19 C -0.113 4.113 20 C -0.121 4.121 21 C -0.115 4.115 22 C -0.116 4.116 23 C -0.125 4.125 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.104 0.896 32 H 0.047 0.953 33 H 0.267 0.733 34 H 0.396 0.604 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.194 7.851 6.057 10.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.168 4.168 4 C 0.011 3.989 5 N -0.191 5.191 6 C -0.462 4.462 7 H 0.098 0.902 8 C -0.164 4.164 9 N -0.498 5.498 10 Si 0.735 3.265 11 H -0.205 1.205 12 H -0.208 1.208 13 H -0.196 1.196 14 C 0.379 3.621 15 O -0.529 6.529 16 N -0.403 5.403 17 C 0.064 3.936 18 C -0.167 4.167 19 C -0.151 4.151 20 C -0.159 4.159 21 C -0.153 4.153 22 C -0.154 4.154 23 C -0.163 4.163 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.122 0.878 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.232 0.768 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.291 7.279 6.655 10.125 hybrid contribution 0.059 0.461 -1.454 1.526 sum -2.232 7.740 5.201 9.589 Atomic orbital electron populations 1.21757 0.96786 1.00557 1.01406 1.21426 0.94839 0.97950 1.01506 1.21951 0.98496 0.95196 1.01142 1.21224 0.90517 0.83971 1.03149 1.42607 1.60658 1.12460 1.03405 1.19162 1.40719 0.95133 0.91181 0.90170 1.25239 0.94487 0.96582 1.00076 1.69980 1.31929 1.15133 1.32789 0.86243 0.78712 0.78480 0.83037 1.20477 1.20823 1.19571 1.16168 0.80036 0.81570 0.84374 1.90710 1.61160 1.69504 1.31507 1.45255 1.72737 1.13623 1.08657 1.20377 0.93418 0.92509 0.87252 1.22359 0.98274 0.97851 0.98173 1.21293 0.98820 0.98608 0.96349 1.21382 0.94954 1.01664 0.97867 1.20493 0.96646 0.99319 0.98793 1.20421 0.98547 1.00999 0.95396 1.21653 0.97843 0.99027 0.97731 0.93145 0.93113 0.93509 0.92337 0.92459 0.92962 0.92623 0.87797 0.93466 0.92323 0.76770 0.90639 0.92428 0.91719 0.92747 0.92441 0.91188 0.92368 0.92382 0.92671 0.92334 0.91856 0.91548 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 37.16 0.37 -1.82 16 2 C -0.12 -2.09 5.93 -26.73 -0.16 -2.25 16 3 C -0.13 -2.74 5.50 -26.73 -0.15 -2.88 16 4 C 0.14 3.35 4.89 -4.04 -0.02 3.33 16 5 N -0.47 -12.05 2.56 -120.18 -0.31 -12.36 16 6 C -0.33 -8.49 8.64 -14.92 -0.13 -8.62 16 7 H 0.08 1.94 6.83 -52.49 -0.36 1.58 16 8 C 0.04 1.05 4.93 -17.47 -0.09 0.96 16 9 N -0.86 -22.98 11.35 55.49 0.63 -22.35 16 10 Si 0.91 19.50 29.61 -169.99 -5.03 14.47 16 11 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 14 C 0.68 17.00 8.11 -86.92 -0.70 16.30 16 15 O -0.64 -17.58 15.68 5.29 0.08 -17.50 16 16 N -0.75 -15.59 4.84 -59.37 -0.29 -15.87 16 17 C 0.17 2.95 1.94 -68.64 -0.13 2.82 16 18 C -0.13 -2.03 5.37 -25.62 -0.14 -2.16 16 19 C -0.11 -1.39 5.31 -27.44 -0.15 -1.54 16 20 C -0.12 -1.41 5.61 -27.34 -0.15 -1.56 16 21 C -0.12 -1.23 5.26 -29.60 -0.16 -1.38 16 22 C -0.12 -1.39 5.26 -29.60 -0.16 -1.55 16 23 C -0.12 -1.72 5.17 -27.34 -0.14 -1.87 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.10 2.70 5.37 -51.93 -0.28 2.42 16 32 H 0.05 1.22 7.59 -51.93 -0.39 0.83 16 33 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.40 7.98 6.49 -40.82 -0.27 7.71 16 35 H 0.08 1.47 6.08 -51.93 -0.32 1.16 16 36 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.65 6.63 -51.93 -0.34 0.31 16 40 H 0.07 0.94 6.98 -51.93 -0.36 0.57 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.58 7.47 -51.93 -0.39 0.19 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.83 7.47 -51.93 -0.39 0.45 16 46 H 0.07 0.83 6.98 -51.93 -0.36 0.47 16 47 H 0.07 1.05 7.86 -51.93 -0.41 0.64 16 LS Contribution 357.07 15.07 5.38 5.38 Total: -1.00 -28.98 357.07 -9.93 -38.91 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -8.49 Total: 11.56 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.90 Total: -2.23 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.04 Total: -50.58 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: 0.08 Total: -17.50 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.98 -9.93 -38.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191262843.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.804 kcal (2) G-P(sol) polarization free energy of solvation -28.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds