Wall clock time and date at job start Tue Mar 31 2020 06:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.46866 * 2 1 4 4 C 1.53003 * 109.47070 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.47069 * 180.02562 * 4 3 2 6 6 C 1.37192 * 119.99433 * 269.99940 * 5 4 3 7 7 H 1.07994 * 119.99689 * 140.67979 * 6 5 4 8 8 C 1.38877 * 119.99910 * 320.67383 * 6 5 4 9 9 N 1.31466 * 120.00313 * 342.95059 * 8 6 5 10 10 Si 1.86809 * 119.99715 * 162.95276 * 8 6 5 11 11 H 1.48498 * 109.47082 * 89.99917 * 10 8 6 12 12 H 1.48493 * 109.46751 * 210.00216 * 10 8 6 13 13 H 1.48497 * 109.46715 * 330.00024 * 10 8 6 14 14 C 1.34777 * 119.99857 * 89.99911 * 5 4 3 15 15 O 1.21581 * 120.00040 * 5.30608 * 14 5 4 16 16 N 1.34780 * 119.99380 * 185.31607 * 14 5 4 17 17 C 1.46497 * 119.99583 * 174.57424 * 16 14 5 18 18 H 1.08999 * 109.47334 * 34.99605 * 17 16 14 19 19 C 1.53001 * 109.46827 * 154.99512 * 17 16 14 20 20 C 1.53003 * 109.47213 * 179.97438 * 19 17 16 21 21 C 1.53007 * 109.46742 * 300.00143 * 20 19 17 22 22 H 1.08996 * 109.47321 * 299.99294 * 21 20 19 23 23 C 1.53003 * 109.46742 * 179.97438 * 21 20 19 24 24 C 1.52996 * 109.47044 * 59.99997 * 21 20 19 25 25 C 1.52993 * 109.47278 * 299.99680 * 24 21 20 26 26 H 1.09009 * 109.47056 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47559 * 299.99682 * 1 2 3 28 28 H 1.09003 * 109.47623 * 59.99986 * 1 2 3 29 29 H 1.09005 * 109.47270 * 240.00832 * 2 1 3 30 30 H 1.08998 * 109.47541 * 120.00490 * 2 1 3 31 31 H 1.08997 * 109.47113 * 60.00528 * 3 2 1 32 32 H 1.08996 * 109.47532 * 300.00025 * 3 2 1 33 33 H 1.08995 * 109.47711 * 60.00100 * 4 3 2 34 34 H 1.09001 * 109.46791 * 299.99741 * 4 3 2 35 35 H 0.96999 * 120.00259 * 185.01639 * 9 8 6 36 36 H 0.97002 * 119.99949 * 354.56381 * 16 14 5 37 37 H 1.08996 * 109.47436 * 60.00316 * 19 17 16 38 38 H 1.09000 * 109.47474 * 299.99821 * 19 17 16 39 39 H 1.08996 * 109.47361 * 180.02562 * 20 19 17 40 40 H 1.08999 * 109.47116 * 59.99990 * 20 19 17 41 41 H 1.08996 * 109.47361 * 60.00201 * 23 21 20 42 42 H 1.09000 * 109.46780 * 180.02562 * 23 21 20 43 43 H 1.08999 * 109.47116 * 299.99847 * 23 21 20 44 44 H 1.08999 * 109.47287 * 59.99864 * 24 21 20 45 45 H 1.09001 * 109.46825 * 179.97438 * 24 21 20 46 46 H 1.08999 * 109.47112 * 300.00291 * 25 24 21 47 47 H 1.09006 * 109.47535 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.2863 3.4712 -1.1879 7 1 4.0263 4.5141 -1.2931 8 6 4.8516 2.7854 -2.2550 9 7 5.4706 1.6440 -2.0491 10 14 4.7325 3.4849 -3.9832 11 1 5.9045 4.3582 -4.2455 12 1 4.7136 2.3727 -4.9669 13 1 3.4846 4.2796 -4.1104 14 6 4.2833 3.4585 1.1675 15 8 4.1742 2.8560 2.2178 16 7 4.6291 4.7612 1.1705 17 6 4.7576 5.4819 2.4394 18 1 5.1518 4.8091 3.2011 19 6 5.7121 6.6642 2.2600 20 6 5.8459 7.4173 3.5851 21 6 4.4723 7.9321 4.0200 22 1 4.0784 8.6047 3.2581 23 6 4.6060 8.6847 5.3454 24 6 3.5179 6.7499 4.1994 25 6 3.3841 5.9968 2.8744 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9330 0.9290 -0.8908 34 1 3.9336 0.9287 0.8892 35 1 5.9280 1.2013 -2.7810 36 1 4.7929 5.2215 0.3325 37 1 5.3180 7.3370 1.4984 38 1 6.6905 6.2974 1.9497 39 1 6.5255 8.2598 3.4572 40 1 6.2398 6.7448 4.3471 41 1 5.2860 9.5270 5.2180 42 1 3.6274 9.0511 5.6555 43 1 4.9997 8.0118 6.1072 44 1 3.9118 6.0773 4.9614 45 1 2.5395 7.1166 4.5097 46 1 2.9902 6.6693 2.1124 47 1 2.7038 5.1547 3.0021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191813330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:08 Heat of formation + Delta-G solvation = -67.864500 kcal Electronic energy + Delta-G solvation = -23388.981261 eV Core-core repulsion = 20184.204320 eV Total energy + Delta-G solvation = -3204.776941 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.33980 -38.04928 -35.44146 -33.84397 -33.71001 -31.41771 -30.59448 -30.44019 -28.09449 -25.57057 -24.75241 -22.67763 -22.48360 -20.89478 -20.25879 -19.69350 -19.22096 -17.60424 -16.39332 -15.32748 -14.76950 -14.63818 -14.58663 -14.14850 -14.11596 -13.91350 -13.67590 -13.27739 -12.92311 -12.83090 -12.36724 -12.16482 -12.05848 -12.00330 -11.87138 -11.48565 -11.32970 -11.13934 -11.01219 -10.92002 -10.66319 -10.55861 -10.50807 -10.40325 -10.26543 -10.16065 -10.09189 -9.85086 -9.61149 -9.12733 -8.60623 -7.99625 -7.25192 -6.24642 -3.99370 3.14223 3.23517 3.26295 3.99774 4.24853 4.50363 4.81089 4.82608 4.98106 5.10281 5.28495 5.38442 5.47703 5.54968 5.57930 5.63841 5.69694 5.71328 5.72920 5.73448 5.79778 5.91160 6.00406 6.04243 6.16599 6.16943 6.25909 6.30203 6.32691 6.38268 6.44548 6.47185 6.50595 6.64776 6.68378 6.75367 6.84311 6.93675 7.22396 7.42589 7.60943 7.72322 8.11014 8.39631 8.66366 9.21235 9.89896 10.26208 10.77661 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014832 B = 0.004940 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.387893 B = 5666.728677 C = 6978.116815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.127 4.127 4 C 0.132 3.868 5 N -0.469 5.469 6 C -0.334 4.334 7 H 0.079 0.921 8 C 0.044 3.956 9 N -0.866 5.866 10 Si 0.912 3.088 11 H -0.279 1.279 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.680 3.320 15 O -0.644 6.644 16 N -0.744 5.744 17 C 0.168 3.832 18 H 0.079 0.921 19 C -0.126 4.126 20 C -0.108 4.108 21 C -0.094 4.094 22 H 0.068 0.932 23 C -0.146 4.146 24 C -0.110 4.110 25 C -0.128 4.128 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.051 0.949 35 H 0.267 0.733 36 H 0.397 0.603 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.041 8.612 6.345 11.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.166 4.166 4 C 0.008 3.992 5 N -0.192 5.192 6 C -0.462 4.462 7 H 0.096 0.904 8 C -0.162 4.162 9 N -0.503 5.503 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.208 1.208 13 H -0.195 1.195 14 C 0.382 3.618 15 O -0.529 6.529 16 N -0.400 5.400 17 C 0.062 3.938 18 H 0.097 0.903 19 C -0.164 4.164 20 C -0.146 4.146 21 C -0.112 4.112 22 H 0.087 0.913 23 C -0.204 4.204 24 C -0.148 4.148 25 C -0.168 4.168 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.233 0.767 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.080 7.969 6.920 10.994 hybrid contribution 0.055 0.550 -1.445 1.547 sum -3.024 8.519 5.475 10.568 Atomic orbital electron populations 1.21757 0.96788 1.00569 1.01394 1.21430 0.94824 0.97950 1.01555 1.21942 0.98523 0.95148 1.01010 1.21262 0.90490 0.84182 1.03302 1.42546 1.61226 1.12605 1.02817 1.19157 1.41570 0.96410 0.89102 0.90362 1.25346 0.94738 0.96141 0.99925 1.69835 1.30795 1.17068 1.32651 0.86179 0.78735 0.78577 0.82646 1.20452 1.20840 1.19538 1.16167 0.79274 0.81569 0.84764 1.90709 1.63661 1.66758 1.31775 1.45038 1.76551 1.10341 1.08092 1.20528 0.93940 0.92091 0.87275 0.90317 1.21797 0.99973 0.97005 0.97637 1.21528 0.96532 0.99451 0.97118 1.21175 0.95935 0.96885 0.97233 0.91350 1.21830 1.01289 0.99911 0.97345 1.21546 0.98760 0.96570 0.97891 1.21962 0.98571 0.99764 0.96457 0.93502 0.93174 0.93094 0.92260 0.92470 0.93367 0.92456 0.87811 0.93096 0.92226 0.76748 0.91804 0.91417 0.92044 0.91825 0.92977 0.92948 0.92749 0.91934 0.92355 0.92404 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.15 0.37 -1.80 16 2 C -0.12 -2.09 5.93 -26.73 -0.16 -2.25 16 3 C -0.13 -2.68 5.54 -26.73 -0.15 -2.83 16 4 C 0.13 3.26 5.04 -4.04 -0.02 3.24 16 5 N -0.47 -12.10 2.51 -120.17 -0.30 -12.40 16 6 C -0.33 -8.50 8.57 -14.92 -0.13 -8.63 16 7 H 0.08 1.89 6.90 -52.49 -0.36 1.53 16 8 C 0.04 1.11 5.05 -17.47 -0.09 1.02 16 9 N -0.87 -23.22 11.32 55.49 0.63 -22.60 16 10 Si 0.91 19.53 29.59 -169.99 -5.03 14.50 16 11 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 13 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 14 C 0.68 17.21 8.18 -86.91 -0.71 16.50 16 15 O -0.64 -17.80 15.52 5.29 0.08 -17.72 16 16 N -0.74 -15.60 4.97 -58.68 -0.29 -15.89 16 17 C 0.17 2.92 2.50 -67.93 -0.17 2.75 16 18 H 0.08 1.55 7.50 -51.93 -0.39 1.16 16 19 C -0.13 -1.74 5.39 -26.73 -0.14 -1.88 16 20 C -0.11 -1.24 5.20 -26.73 -0.14 -1.38 16 21 C -0.09 -1.02 2.72 -90.62 -0.25 -1.27 16 22 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 23 C -0.15 -1.35 9.19 37.16 0.34 -1.00 16 24 C -0.11 -1.38 5.20 -26.74 -0.14 -1.52 16 25 C -0.13 -2.02 5.49 -26.74 -0.15 -2.16 16 26 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.10 2.71 5.48 -51.93 -0.28 2.43 16 34 H 0.05 1.32 7.35 -51.93 -0.38 0.94 16 35 H 0.27 6.79 8.32 -40.82 -0.34 6.45 16 36 H 0.40 8.01 6.68 -40.82 -0.27 7.74 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 366.09 15.07 5.52 5.52 Total: -1.00 -29.17 366.09 -9.79 -38.95 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -8.86 Total: 10.85 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.53 Total: -1.22 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.03 Total: -50.88 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.08 Total: -17.72 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.17 -9.79 -38.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191813330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.910 kcal (2) G-P(sol) polarization free energy of solvation -29.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds