Wall clock time and date at job start Tue Mar 31 2020 05:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46801 * 2 1 4 4 C 1.53001 * 109.47082 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47611 * 180.02562 * 4 3 2 6 6 H 1.09009 * 109.46800 * 305.00106 * 5 4 3 7 7 C 1.52994 * 109.47588 * 185.00073 * 5 4 3 8 8 N 1.46501 * 109.47040 * 64.99474 * 5 4 3 9 9 C 1.34781 * 119.99829 * 205.00266 * 8 5 4 10 10 O 1.21577 * 120.00260 * 355.02877 * 9 8 5 11 11 N 1.34782 * 119.99697 * 175.03075 * 9 8 5 12 12 C 1.46924 * 120.62720 * 184.99565 * 11 9 8 13 13 C 1.52761 * 109.00991 * 233.58151 * 12 11 9 14 14 C 1.53040 * 109.38288 * 305.59168 * 13 12 11 15 15 C 1.50701 * 109.44770 * 181.25058 * 14 13 12 16 16 H 1.08003 * 119.99975 * 245.35725 * 15 14 13 17 17 C 1.37867 * 120.00017 * 65.36068 * 15 14 13 18 18 N 1.31516 * 120.00316 * 355.13052 * 17 15 14 19 19 Si 1.86802 * 120.00041 * 175.13473 * 17 15 14 20 20 H 1.48501 * 109.47211 * 94.99683 * 19 17 15 21 21 H 1.48505 * 109.47156 * 214.99572 * 19 17 15 22 22 H 1.48496 * 109.47343 * 334.99546 * 19 17 15 23 23 C 1.53045 * 109.53678 * 61.23791 * 14 13 12 24 24 C 1.46922 * 120.63083 * 5.27636 * 11 9 8 25 25 H 1.09003 * 109.46788 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47549 * 300.00336 * 1 2 3 27 27 H 1.09002 * 109.46593 * 60.00656 * 1 2 3 28 28 H 1.08998 * 109.47549 * 239.99664 * 2 1 3 29 29 H 1.09002 * 109.46593 * 119.99344 * 2 1 3 30 30 H 1.09001 * 109.47613 * 59.99995 * 3 2 1 31 31 H 1.09004 * 109.47275 * 299.99559 * 3 2 1 32 32 H 1.08998 * 109.47274 * 59.99660 * 4 3 2 33 33 H 1.09004 * 109.46840 * 299.99990 * 4 3 2 34 34 H 1.08997 * 109.47454 * 179.97438 * 7 5 4 35 35 H 1.09007 * 109.46819 * 299.99399 * 7 5 4 36 36 H 1.08999 * 109.47647 * 59.99383 * 7 5 4 37 37 H 0.97000 * 120.00138 * 25.00272 * 8 5 4 38 38 H 1.09002 * 109.59123 * 353.42159 * 12 11 9 39 39 H 1.09005 * 109.58545 * 113.84489 * 12 11 9 40 40 H 1.08992 * 109.56617 * 185.55248 * 13 12 11 41 41 H 1.08998 * 109.38255 * 65.51811 * 13 12 11 42 42 H 1.08993 * 109.46419 * 301.21761 * 14 13 12 43 43 H 0.97004 * 120.00315 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.49657 * 178.68204 * 23 14 13 45 45 H 1.08998 * 109.52796 * 58.60425 * 23 14 13 46 46 H 1.08999 * 109.58768 * 246.15710 * 24 11 9 47 47 H 1.09005 * 109.58869 * 6.43776 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6457 3.4243 -0.8406 7 6 5.6048 2.8870 -0.1238 8 7 3.6918 3.5397 1.2531 9 6 3.5650 4.8806 1.3011 10 8 3.8596 5.5542 0.3328 11 7 3.1115 5.4749 2.4227 12 6 2.8642 6.9228 2.4551 13 6 3.6252 7.5314 3.6316 14 6 3.2405 6.7986 4.9189 15 6 3.9670 7.4179 6.0850 16 1 4.7027 6.8441 6.6292 17 6 3.6927 8.7167 6.4571 18 7 2.8686 9.4468 5.7377 19 14 4.4915 9.4397 7.9831 20 1 5.7163 10.1844 7.5952 21 1 3.5397 10.3649 8.6490 22 1 4.8535 8.3445 8.9184 23 6 3.6274 5.3225 4.8028 24 6 2.8611 4.6880 3.6379 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.8935 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9286 -0.8891 33 1 3.9329 0.9289 0.8909 34 1 5.9681 3.9146 -0.1238 35 1 6.0391 2.3477 0.7182 36 1 5.8937 2.3999 -1.0551 37 1 3.5261 3.0081 2.0473 38 1 3.2106 7.3736 1.5251 39 1 1.7972 7.1085 2.5783 40 1 3.3707 8.5871 3.7240 41 1 4.6968 7.4290 3.4611 42 1 2.1651 6.8808 5.0761 43 1 2.6758 10.3608 5.9993 44 1 3.3744 4.8061 5.7288 45 1 4.6990 5.2399 4.6213 46 1 1.7939 4.6878 3.8596 47 1 3.2032 3.6641 3.4872 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193045737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:09 Heat of formation + Delta-G solvation = -61.242935 kcal Electronic energy + Delta-G solvation = -23119.616529 eV Core-core repulsion = 19915.126721 eV Total energy + Delta-G solvation = -3204.489808 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.03251 -37.56826 -36.39871 -34.48140 -33.51829 -31.63265 -30.78428 -29.76539 -28.87929 -26.09013 -24.38630 -23.06463 -22.35959 -21.26778 -21.01859 -20.09381 -18.87013 -17.57007 -16.45320 -16.19122 -15.44596 -14.98349 -14.62118 -14.44303 -14.31896 -13.98456 -13.48349 -13.14644 -13.05186 -13.00490 -12.71165 -12.56194 -12.46229 -12.20167 -12.05792 -11.74831 -11.53698 -11.29728 -11.10963 -11.04197 -10.93498 -10.75730 -10.64780 -10.60992 -10.40593 -10.05053 -9.68780 -9.52625 -9.15539 -8.91164 -8.85881 -8.35967 -7.84452 -6.01010 -4.06684 3.07870 3.29401 3.36930 3.39821 3.62884 4.24962 4.42636 4.45231 4.71770 4.79851 5.02316 5.10116 5.21986 5.29398 5.38014 5.38940 5.51707 5.57821 5.62961 5.64158 5.75337 5.78479 5.78799 5.83252 5.93139 5.99139 6.05729 6.13956 6.16816 6.29013 6.29974 6.45766 6.53232 6.63710 6.79728 6.85602 7.00978 7.18926 7.27357 7.54274 7.72323 7.94822 8.05993 8.38139 8.42204 8.97014 9.02544 9.58188 11.05220 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025823 B = 0.003464 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.052576 B = 8080.335439 C = 8436.024354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.126 4.126 5 C 0.161 3.839 6 H 0.084 0.916 7 C -0.164 4.164 8 N -0.746 5.746 9 C 0.705 3.295 10 O -0.601 6.601 11 N -0.619 5.619 12 C 0.127 3.873 13 C -0.121 4.121 14 C 0.050 3.950 15 C -0.514 4.514 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.124 4.124 24 C 0.114 3.886 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.393 0.607 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.098 0.902 41 H 0.037 0.963 42 H 0.029 0.971 43 H 0.260 0.740 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.061 0.939 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.825 -17.471 -9.985 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.158 4.158 4 C -0.164 4.164 5 C 0.055 3.945 6 H 0.102 0.898 7 C -0.223 4.223 8 N -0.405 5.405 9 C 0.407 3.593 10 O -0.481 6.481 11 N -0.355 5.355 12 C 0.005 3.995 13 C -0.160 4.160 14 C 0.032 3.968 15 C -0.552 4.552 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.162 4.162 24 C -0.009 4.009 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.229 0.771 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.725 -16.784 -10.701 19.980 hybrid contribution 0.397 0.198 1.348 1.419 sum -1.328 -16.586 -9.354 19.088 Atomic orbital electron populations 1.21781 0.95961 1.01393 1.01981 1.21536 0.95872 0.96955 1.01785 1.21628 0.94976 0.96544 1.02685 1.21918 0.96002 0.95695 1.02802 1.20744 0.94517 0.92190 0.87034 0.89792 1.22203 0.95899 1.02872 1.01298 1.45405 1.75851 1.05688 1.13551 1.15884 0.78217 0.81786 0.83439 1.90850 1.57570 1.63289 1.36349 1.47435 1.68477 1.09569 1.10047 1.21654 0.99570 0.77329 1.00988 1.21931 0.97621 1.03030 0.93415 1.18625 0.96928 0.88214 0.93079 1.21176 1.22596 0.97818 1.13628 0.92794 1.24965 0.95206 0.97083 0.96696 1.69881 1.35896 1.08877 1.38133 0.86625 0.79123 0.79020 0.83486 1.20841 1.21212 1.19950 1.22014 0.98998 1.00023 0.95176 1.21689 1.00124 0.93225 0.85878 0.92960 0.92646 0.92796 0.92211 0.92124 0.91668 0.91907 0.90561 0.91531 0.91726 0.92779 0.92157 0.77097 0.90593 0.92664 0.88383 0.94380 0.95280 0.92987 0.92175 0.92994 0.92042 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.77 16 2 C -0.12 -0.91 5.93 -26.73 -0.16 -1.07 16 3 C -0.12 -1.04 5.10 -26.73 -0.14 -1.18 16 4 C -0.13 -1.05 4.75 -26.73 -0.13 -1.18 16 5 C 0.16 1.86 2.54 -67.93 -0.17 1.68 16 6 H 0.08 1.13 7.65 -51.92 -0.40 0.73 16 7 C -0.16 -1.86 9.48 37.15 0.35 -1.50 16 8 N -0.75 -10.09 4.44 -58.68 -0.26 -10.35 16 9 C 0.71 12.75 8.26 -86.91 -0.72 12.04 16 10 O -0.60 -12.94 15.43 5.30 0.08 -12.86 16 11 N -0.62 -11.35 2.98 -178.76 -0.53 -11.89 16 12 C 0.13 2.60 6.41 -3.93 -0.03 2.57 16 13 C -0.12 -2.84 5.18 -26.83 -0.14 -2.98 16 14 C 0.05 1.19 2.01 -91.73 -0.18 1.01 16 15 C -0.51 -13.75 8.49 -34.44 -0.29 -14.04 16 16 H 0.05 1.43 7.75 -52.48 -0.41 1.03 16 17 C 0.06 1.68 5.36 -17.82 -0.10 1.59 16 18 N -0.89 -24.92 11.53 55.43 0.64 -24.28 16 19 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.12 -2.40 5.30 -26.61 -0.14 -2.54 16 24 C 0.11 1.84 6.39 -3.71 -0.02 1.81 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.63 7.75 -51.93 -0.40 0.23 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.39 4.54 6.09 -40.82 -0.25 4.29 16 38 H 0.08 1.60 6.99 -51.93 -0.36 1.24 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.10 2.55 6.29 -51.93 -0.33 2.23 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.06 0.75 5.64 -51.93 -0.29 0.45 16 LS Contribution 365.23 15.07 5.50 5.50 Total: -1.00 -29.97 365.23 -9.84 -39.81 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -8.76 Total: 2.60 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -1.49 Total: -4.56 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.15 Total: -46.52 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.86 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.97 -9.84 -39.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193045737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.429 kcal (2) G-P(sol) polarization free energy of solvation -29.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds