Wall clock time and date at job start Tue Mar 31 2020 05:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 C 1.52995 * 109.47139 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47438 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47541 * 305.00210 * 5 4 3 7 7 C 1.53000 * 109.47600 * 184.99786 * 5 4 3 8 8 N 1.46506 * 109.47040 * 64.99561 * 5 4 3 9 9 C 1.34770 * 120.00206 * 204.99841 * 8 5 4 10 10 O 1.21584 * 120.00098 * 5.08301 * 9 8 5 11 11 N 1.34777 * 119.99990 * 185.07826 * 9 8 5 12 12 C 1.46930 * 120.63129 * 354.94493 * 11 9 8 13 13 C 1.53197 * 108.77285 * 126.41060 * 12 11 9 14 14 C 1.53040 * 109.31487 * 54.63837 * 13 12 11 15 15 C 1.53040 * 109.53612 * 298.63140 * 14 13 12 16 16 H 1.08994 * 109.49684 * 301.41668 * 15 14 13 17 17 C 1.50702 * 109.52295 * 181.33077 * 15 14 13 18 18 H 1.07995 * 119.99865 * 0.08455 * 17 15 14 19 19 C 1.37877 * 119.99887 * 180.02562 * 17 15 14 20 20 N 1.31523 * 119.99895 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 119.99958 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46834 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47129 * 120.00315 * 21 19 17 24 24 H 1.48498 * 109.46856 * 240.00027 * 21 19 17 25 25 C 1.46926 * 120.63009 * 174.96456 * 11 9 8 26 26 H 1.08993 * 109.47284 * 300.00318 * 1 2 3 27 27 H 1.09003 * 109.46722 * 60.00693 * 1 2 3 28 28 H 1.08996 * 109.47008 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46964 * 239.99738 * 2 1 3 30 30 H 1.08996 * 109.46666 * 119.99735 * 2 1 3 31 31 H 1.08999 * 109.47159 * 59.99314 * 3 2 1 32 32 H 1.09005 * 109.46687 * 299.99799 * 3 2 1 33 33 H 1.09007 * 109.47257 * 59.99722 * 4 3 2 34 34 H 1.08998 * 109.47189 * 299.99982 * 4 3 2 35 35 H 1.08996 * 109.47229 * 180.02562 * 7 5 4 36 36 H 1.09002 * 109.47040 * 300.00299 * 7 5 4 37 37 H 1.08994 * 109.46767 * 60.00331 * 7 5 4 38 38 H 0.97005 * 119.99639 * 25.00825 * 8 5 4 39 39 H 1.08995 * 109.58769 * 246.19695 * 12 11 9 40 40 H 1.08995 * 109.58376 * 6.48468 * 12 11 9 41 41 H 1.09003 * 109.49429 * 174.58583 * 13 12 11 42 42 H 1.08996 * 109.50060 * 294.67881 * 13 12 11 43 43 H 1.08989 * 109.46143 * 178.61005 * 14 13 12 44 44 H 1.09003 * 109.45643 * 58.64789 * 14 13 12 45 45 H 0.97002 * 119.99401 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.58384 * 113.80479 * 25 11 9 47 47 H 1.08995 * 109.70527 * 353.44950 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 1 3.6458 3.4235 -0.8422 7 6 5.6049 2.8867 -0.1250 8 7 3.6918 3.5407 1.2513 9 6 3.5651 4.8816 1.2982 10 8 3.6819 5.5393 0.2823 11 7 3.3086 5.4936 2.4713 12 6 3.0553 4.7072 3.6863 13 6 4.0092 5.1803 4.7877 14 6 3.8571 6.6917 4.9742 15 6 4.2281 7.4078 3.6736 16 1 5.2527 7.1568 3.3996 17 6 4.1097 8.8976 3.8674 18 1 3.8019 9.2949 4.8233 19 6 4.3953 9.7533 2.8248 20 7 4.7707 9.2693 1.6609 21 14 4.2493 11.6000 3.0653 22 1 3.8118 11.8849 4.4554 23 1 5.5682 12.2369 2.8204 24 1 3.2511 12.1459 2.1109 25 6 3.2767 6.9599 2.5595 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9288 0.8908 35 1 5.9682 3.9144 -0.1250 36 1 6.0391 2.3482 0.7173 37 1 5.8936 2.3989 -1.0560 38 1 3.5262 3.0097 2.0460 39 1 2.0243 4.8537 4.0081 40 1 3.2271 3.6508 3.4801 41 1 3.7673 4.6724 5.7213 42 1 5.0359 4.9503 4.5033 43 1 4.5169 7.0270 5.7743 44 1 2.8242 6.9233 5.2344 45 1 4.9721 9.8714 0.9275 46 1 2.2636 7.2901 2.7894 47 1 3.5954 7.3921 1.6110 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193050720.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:33 Heat of formation + Delta-G solvation = -59.078213 kcal Electronic energy + Delta-G solvation = -23388.216952 eV Core-core repulsion = 20183.821014 eV Total energy + Delta-G solvation = -3204.395939 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.77960 -37.45777 -36.24262 -34.33886 -33.35419 -31.84980 -30.73118 -29.57820 -28.79664 -25.04181 -24.67659 -23.94831 -21.80494 -21.21657 -20.97069 -19.93181 -18.76512 -17.43489 -16.22196 -16.10480 -15.32941 -14.75047 -14.60351 -14.27105 -14.07010 -13.86552 -13.66786 -13.28072 -13.02038 -12.81782 -12.62634 -12.50237 -12.37259 -12.09206 -11.95539 -11.83193 -11.45708 -11.22442 -10.99432 -10.92431 -10.85462 -10.68354 -10.49719 -10.45230 -10.33445 -10.19409 -9.84106 -9.35071 -9.06272 -8.90161 -8.62957 -8.38377 -7.57567 -5.95023 -4.03867 3.29662 3.35579 3.41280 3.44222 3.95045 4.41887 4.49458 4.56190 4.78484 4.88588 5.10986 5.18184 5.30271 5.33256 5.35116 5.51525 5.53820 5.59420 5.65245 5.68057 5.70584 5.73680 5.83334 5.88960 5.98822 6.01863 6.08604 6.17860 6.22645 6.26760 6.34918 6.44461 6.63154 6.71208 6.85797 6.99242 7.03755 7.12692 7.40552 7.57758 7.80221 7.98019 8.11522 8.45285 8.68514 9.00029 9.35763 9.61589 11.10032 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023082 B = 0.003922 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.760832 B = 7136.609811 C = 7490.006303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.120 4.120 4 C -0.125 4.125 5 C 0.159 3.841 6 H 0.086 0.914 7 C -0.164 4.164 8 N -0.751 5.751 9 C 0.701 3.299 10 O -0.585 6.585 11 N -0.624 5.624 12 C 0.116 3.884 13 C -0.133 4.133 14 C -0.109 4.109 15 C 0.039 3.961 16 H 0.028 0.972 17 C -0.520 4.520 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.879 5.879 21 Si 0.891 3.109 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.130 3.870 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.388 0.612 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.262 0.738 46 H 0.037 0.963 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.242 -18.707 -0.257 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.158 4.158 4 C -0.163 4.163 5 C 0.053 3.947 6 H 0.104 0.896 7 C -0.222 4.222 8 N -0.410 5.410 9 C 0.403 3.597 10 O -0.463 6.463 11 N -0.360 5.360 12 C -0.008 4.008 13 C -0.172 4.172 14 C -0.147 4.147 15 C 0.020 3.980 16 H 0.046 0.954 17 C -0.559 4.559 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.516 5.516 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.210 1.210 25 C 0.009 3.991 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.224 0.776 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.055 0.945 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.098 -18.127 -1.205 18.623 hybrid contribution -0.097 0.709 0.575 0.918 sum -4.195 -17.418 -0.630 17.927 Atomic orbital electron populations 1.21778 0.96035 1.01300 1.01975 1.21538 0.95800 0.97073 1.01719 1.21621 0.95098 0.96348 1.02730 1.21899 0.95888 0.95899 1.02589 1.20718 0.94357 0.92000 0.87582 0.89577 1.22204 0.96011 1.02908 1.01110 1.45432 1.76456 1.05900 1.13217 1.15958 0.78064 0.81420 0.84269 1.90905 1.58312 1.64048 1.32998 1.47777 1.73476 1.08967 1.05813 1.21470 0.98936 0.93837 0.86555 1.21946 0.99407 0.98798 0.97004 1.21607 1.00416 0.92276 1.00409 1.18989 0.95366 0.94389 0.89240 0.95420 1.21112 1.46696 0.90391 0.97713 0.92376 1.25062 0.94866 0.98820 0.95325 1.69914 1.44997 1.34620 1.02077 0.86548 0.77675 0.85733 0.78118 1.19826 1.21064 1.20982 1.22144 0.98424 0.73108 1.05406 0.92725 0.92757 0.93020 0.92213 0.92220 0.91752 0.91836 0.90697 0.91720 0.91712 0.92932 0.92225 0.77605 0.92297 0.92211 0.92440 0.92224 0.93134 0.93239 0.92756 0.94454 0.86001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.12 -0.99 5.93 -26.73 -0.16 -1.15 16 3 C -0.12 -1.16 5.10 -26.73 -0.14 -1.30 16 4 C -0.12 -1.18 4.75 -26.74 -0.13 -1.31 16 5 C 0.16 2.12 2.62 -67.93 -0.18 1.94 16 6 H 0.09 1.35 7.51 -51.93 -0.39 0.96 16 7 C -0.16 -2.14 9.48 37.16 0.35 -1.79 16 8 N -0.75 -11.37 4.44 -58.68 -0.26 -11.64 16 9 C 0.70 14.55 8.26 -86.92 -0.72 13.83 16 10 O -0.59 -14.89 15.41 5.29 0.08 -14.80 16 11 N -0.62 -12.80 2.97 -178.50 -0.53 -13.33 16 12 C 0.12 1.82 6.43 -3.71 -0.02 1.80 16 13 C -0.13 -2.16 6.08 -26.61 -0.16 -2.32 16 14 C -0.11 -2.19 5.11 -26.69 -0.14 -2.33 16 15 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 16 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 17 C -0.52 -14.27 8.56 -34.44 -0.29 -14.56 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 20 N -0.88 -26.01 11.40 55.43 0.63 -25.38 16 21 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.13 3.22 5.39 -3.71 -0.02 3.20 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.39 4.86 6.06 -40.82 -0.25 4.61 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.74 5.56 -51.93 -0.29 0.45 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 1.00 8.14 -51.94 -0.42 0.57 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.12 3.56 5.16 -51.93 -0.27 3.29 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -31.72 364.92 -9.88 -41.61 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -8.75 Total: 3.96 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -1.53 Total: -2.39 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.16 Total: -50.35 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: 0.08 Total: -14.80 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.72 -9.88 -41.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193050720.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.473 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds