Wall clock time and date at job start Tue Mar 31 2020 05:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46880 * 2 1 4 4 C 1.52999 * 109.46707 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46853 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47088 * 305.00097 * 5 4 3 7 7 C 1.53003 * 109.47205 * 185.00229 * 5 4 3 8 8 N 1.46495 * 109.46881 * 65.00197 * 5 4 3 9 9 C 1.34777 * 119.99920 * 204.72033 * 8 5 4 10 10 O 1.21587 * 120.00240 * 354.93383 * 9 8 5 11 11 N 1.34778 * 120.00107 * 174.92606 * 9 8 5 12 12 C 1.46930 * 120.62998 * 5.03903 * 11 9 8 13 13 C 1.53198 * 108.77413 * 233.58255 * 12 11 9 14 14 C 1.53036 * 109.30858 * 305.36375 * 13 12 11 15 15 C 1.53041 * 109.54238 * 61.36663 * 14 13 12 16 16 H 1.09001 * 109.49927 * 58.58477 * 15 14 13 17 17 C 1.50702 * 109.49961 * 178.68360 * 15 14 13 18 18 H 1.07999 * 119.99821 * 359.97438 * 17 15 14 19 19 C 1.37873 * 119.99774 * 180.02562 * 17 15 14 20 20 N 1.31514 * 120.00429 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99675 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47183 * 89.99855 * 21 19 17 23 23 H 1.48503 * 109.47121 * 209.99862 * 21 19 17 24 24 H 1.48505 * 109.47141 * 330.00096 * 21 19 17 25 25 C 1.46919 * 120.63174 * 184.75230 * 11 9 8 26 26 H 1.08998 * 109.47456 * 300.00629 * 1 2 3 27 27 H 1.09009 * 109.46707 * 60.00511 * 1 2 3 28 28 H 1.09000 * 109.47202 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47492 * 239.99927 * 2 1 3 30 30 H 1.09001 * 109.46876 * 119.99178 * 2 1 3 31 31 H 1.08997 * 109.47118 * 59.99697 * 3 2 1 32 32 H 1.09001 * 109.46695 * 299.99289 * 3 2 1 33 33 H 1.09007 * 109.47118 * 60.00268 * 4 3 2 34 34 H 1.08997 * 109.47606 * 299.99834 * 4 3 2 35 35 H 1.09001 * 109.47003 * 59.99824 * 7 5 4 36 36 H 1.08993 * 109.47110 * 180.02562 * 7 5 4 37 37 H 1.09000 * 109.47238 * 300.00379 * 7 5 4 38 38 H 0.97005 * 120.00224 * 24.99906 * 8 5 4 39 39 H 1.08999 * 109.58333 * 353.36767 * 12 11 9 40 40 H 1.08998 * 109.59056 * 113.64797 * 12 11 9 41 41 H 1.09002 * 109.49550 * 65.31191 * 13 12 11 42 42 H 1.08993 * 109.49669 * 185.40883 * 13 12 11 43 43 H 1.09004 * 109.45718 * 181.38511 * 14 13 12 44 44 H 1.09004 * 109.46343 * 301.35536 * 14 13 12 45 45 H 0.96998 * 119.99915 * 179.97438 * 20 19 17 46 46 H 1.09006 * 109.58773 * 246.20765 * 25 11 9 47 47 H 1.08997 * 109.58838 * 6.62846 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8851 0.0000 6 1 3.6456 3.4236 -0.8423 7 6 5.6049 2.8869 -0.1251 8 7 3.6919 3.5407 1.2512 9 6 3.5705 4.8821 1.2997 10 8 3.8715 5.5551 0.3328 11 7 3.1152 5.4776 2.4198 12 6 2.8517 4.6902 3.6320 13 6 1.4181 4.9655 4.0968 14 6 1.2237 6.4733 4.2720 15 6 1.4398 7.1767 2.9301 16 1 0.7374 6.7827 2.1955 17 6 1.2164 8.6577 3.0967 18 1 0.9468 9.0578 4.0630 19 6 1.3553 9.5017 2.0154 20 7 1.6832 9.0145 0.8387 21 14 1.0777 11.3375 2.2219 22 1 2.3594 11.9943 2.5837 23 1 0.5716 11.9079 0.9476 24 1 0.0815 11.5695 3.2984 25 6 2.8789 6.9273 2.4538 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9289 0.8908 35 1 5.8936 2.3990 -1.0561 36 1 5.9682 3.9145 -0.1251 37 1 6.0392 2.3483 0.7171 38 1 3.5262 3.0097 2.0460 39 1 2.9667 3.6292 3.4106 40 1 3.5535 4.9783 4.4146 41 1 0.7160 4.5923 3.3512 42 1 1.2411 4.4628 5.0476 43 1 0.2118 6.6701 4.6263 44 1 1.9428 6.8501 4.9993 45 1 1.7805 9.6083 0.0779 46 1 3.5813 7.3959 3.1432 47 1 3.0119 7.3427 1.4549 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193050721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:37 Heat of formation + Delta-G solvation = -59.067935 kcal Electronic energy + Delta-G solvation = -23508.972499 eV Core-core repulsion = 20304.577006 eV Total energy + Delta-G solvation = -3204.395493 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.77727 -37.43954 -36.22727 -34.30336 -33.34721 -31.85021 -30.72163 -29.56374 -28.78230 -25.04159 -24.65416 -23.93101 -21.80862 -21.17495 -20.94436 -19.94812 -18.76704 -17.42623 -16.23666 -16.07417 -15.27883 -14.81838 -14.53488 -14.21980 -14.05157 -13.82177 -13.66536 -13.36558 -12.97652 -12.88470 -12.55388 -12.49153 -12.35016 -12.02670 -12.00635 -11.79484 -11.41894 -11.18021 -10.99138 -10.94866 -10.81778 -10.63467 -10.50347 -10.46267 -10.33649 -10.19349 -9.83278 -9.35337 -9.06170 -8.90121 -8.63517 -8.38644 -7.57067 -5.94738 -4.03645 3.30404 3.35958 3.41163 3.43408 3.94606 4.42225 4.49955 4.59000 4.83698 4.92724 5.14161 5.21722 5.31929 5.34440 5.35530 5.51960 5.53794 5.62811 5.65430 5.70295 5.73993 5.75822 5.86547 5.89634 6.01397 6.05148 6.11439 6.18787 6.24910 6.30511 6.34852 6.40966 6.62845 6.71105 6.85747 6.99006 7.03574 7.12889 7.39874 7.57532 7.80209 7.97882 8.11114 8.45255 8.68543 8.99955 9.35806 9.61788 11.10415 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018465 B = 0.004302 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.004749 B = 6506.697345 C = 6862.813439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.122 4.122 4 C -0.124 4.124 5 C 0.160 3.840 6 H 0.085 0.915 7 C -0.162 4.162 8 N -0.751 5.751 9 C 0.701 3.299 10 O -0.585 6.585 11 N -0.624 5.624 12 C 0.116 3.884 13 C -0.133 4.133 14 C -0.110 4.110 15 C 0.040 3.960 16 H 0.028 0.972 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.879 5.879 21 Si 0.891 3.109 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.130 3.870 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.388 0.612 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.263 0.737 46 H 0.037 0.963 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.642 -18.125 1.578 18.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.159 4.159 4 C -0.162 4.162 5 C 0.054 3.946 6 H 0.103 0.897 7 C -0.221 4.221 8 N -0.410 5.410 9 C 0.403 3.597 10 O -0.462 6.462 11 N -0.360 5.360 12 C -0.008 4.008 13 C -0.171 4.171 14 C -0.147 4.147 15 C 0.021 3.979 16 H 0.046 0.954 17 C -0.560 4.560 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.516 5.516 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.200 1.200 25 C 0.009 3.991 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.224 0.776 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.879 -17.538 0.648 17.785 hybrid contribution -0.214 0.705 0.553 0.922 sum 2.665 -16.833 1.201 17.085 Atomic orbital electron populations 1.21782 0.95968 1.01260 1.02121 1.21530 0.95877 0.97023 1.01601 1.21632 0.94958 0.96394 1.02930 1.21900 0.96031 0.95790 1.02509 1.20717 0.94296 0.92086 0.87460 0.89717 1.22196 0.96124 1.02767 1.01031 1.45433 1.76506 1.05837 1.13220 1.15966 0.78576 0.81483 0.83721 1.90906 1.56427 1.63053 1.35829 1.47781 1.67995 1.10535 1.09738 1.21472 0.97098 0.94075 0.88157 1.21940 0.96013 0.99160 0.99989 1.21612 1.00298 0.92345 1.00472 1.19060 0.92645 0.94967 0.91245 0.95371 1.21080 1.48033 0.91440 0.95483 0.92435 1.25049 0.94922 0.98730 0.95278 1.69901 1.46766 1.34977 0.99984 0.86612 0.78398 0.85640 0.77451 1.20659 1.21237 1.19969 1.22235 0.97635 0.73845 1.05336 0.92631 0.92709 0.93058 0.92278 0.92286 0.91616 0.91768 0.90720 0.91769 0.92278 0.91724 0.93057 0.77609 0.92231 0.92298 0.92220 0.92455 0.93138 0.93244 0.92694 0.94437 0.86060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.12 -1.06 5.93 -26.73 -0.16 -1.22 16 3 C -0.12 -1.26 5.10 -26.73 -0.14 -1.40 16 4 C -0.12 -1.21 4.75 -26.73 -0.13 -1.33 16 5 C 0.16 2.13 2.53 -67.93 -0.17 1.96 16 6 H 0.08 1.36 7.66 -51.93 -0.40 0.96 16 7 C -0.16 -2.02 9.48 37.16 0.35 -1.67 16 8 N -0.75 -11.36 4.44 -58.67 -0.26 -11.62 16 9 C 0.70 14.52 8.25 -86.92 -0.72 13.80 16 10 O -0.58 -14.84 15.42 5.29 0.08 -14.76 16 11 N -0.62 -12.78 2.97 -178.23 -0.53 -13.31 16 12 C 0.12 1.82 6.43 -3.71 -0.02 1.80 16 13 C -0.13 -2.14 6.08 -26.61 -0.16 -2.30 16 14 C -0.11 -2.20 5.10 -26.69 -0.14 -2.33 16 15 C 0.04 1.00 2.26 -91.43 -0.21 0.80 16 16 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.52 -14.30 8.56 -34.44 -0.29 -14.59 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 20 N -0.88 -26.03 11.41 55.43 0.63 -25.40 16 21 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.13 3.23 5.41 -3.49 -0.02 3.21 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 1.00 8.06 -51.93 -0.42 0.58 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.39 4.85 6.06 -40.82 -0.25 4.60 16 39 H 0.06 0.74 5.57 -51.93 -0.29 0.45 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.12 3.54 5.18 -51.93 -0.27 3.27 16 LS Contribution 364.97 15.07 5.50 5.50 Total: -1.00 -31.66 364.97 -9.88 -41.53 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -8.75 Total: 4.18 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -1.53 Total: -2.57 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.16 Total: -50.33 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.08 Total: -14.76 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.66 -9.88 -41.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193050721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.535 kcal (2) G-P(sol) polarization free energy of solvation -31.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds