Wall clock time and date at job start Tue Mar 31 2020 05:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46880 * 2 1 4 4 C 1.52999 * 109.46707 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46853 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47088 * 305.00097 * 5 4 3 7 7 C 1.53003 * 109.47205 * 185.00229 * 5 4 3 8 8 N 1.46495 * 109.46881 * 65.00197 * 5 4 3 9 9 C 1.34777 * 119.99920 * 204.72033 * 8 5 4 10 10 O 1.21587 * 120.00240 * 354.93383 * 9 8 5 11 11 N 1.34778 * 120.00107 * 174.92606 * 9 8 5 12 12 C 1.46930 * 120.62998 * 5.03903 * 11 9 8 13 13 C 1.53198 * 108.77413 * 233.58255 * 12 11 9 14 14 C 1.53036 * 109.30858 * 305.36375 * 13 12 11 15 15 C 1.53041 * 109.54238 * 61.36663 * 14 13 12 16 16 H 1.09001 * 109.49927 * 58.58477 * 15 14 13 17 17 C 1.50702 * 109.49961 * 178.68360 * 15 14 13 18 18 H 1.07999 * 119.99821 * 359.97438 * 17 15 14 19 19 C 1.37873 * 119.99774 * 180.02562 * 17 15 14 20 20 N 1.31514 * 120.00429 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99675 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47183 * 89.99855 * 21 19 17 23 23 H 1.48503 * 109.47121 * 209.99862 * 21 19 17 24 24 H 1.48505 * 109.47141 * 330.00096 * 21 19 17 25 25 C 1.46919 * 120.63174 * 184.75230 * 11 9 8 26 26 H 1.08998 * 109.47456 * 300.00629 * 1 2 3 27 27 H 1.09009 * 109.46707 * 60.00511 * 1 2 3 28 28 H 1.09000 * 109.47202 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47492 * 239.99927 * 2 1 3 30 30 H 1.09001 * 109.46876 * 119.99178 * 2 1 3 31 31 H 1.08997 * 109.47118 * 59.99697 * 3 2 1 32 32 H 1.09001 * 109.46695 * 299.99289 * 3 2 1 33 33 H 1.09007 * 109.47118 * 60.00268 * 4 3 2 34 34 H 1.08997 * 109.47606 * 299.99834 * 4 3 2 35 35 H 1.09001 * 109.47003 * 59.99824 * 7 5 4 36 36 H 1.08993 * 109.47110 * 180.02562 * 7 5 4 37 37 H 1.09000 * 109.47238 * 300.00379 * 7 5 4 38 38 H 0.97005 * 120.00224 * 24.99906 * 8 5 4 39 39 H 1.08999 * 109.58333 * 353.36767 * 12 11 9 40 40 H 1.08998 * 109.59056 * 113.64797 * 12 11 9 41 41 H 1.09002 * 109.49550 * 65.31191 * 13 12 11 42 42 H 1.08993 * 109.49669 * 185.40883 * 13 12 11 43 43 H 1.09004 * 109.45718 * 181.38511 * 14 13 12 44 44 H 1.09004 * 109.46343 * 301.35536 * 14 13 12 45 45 H 0.96998 * 119.99915 * 179.97438 * 20 19 17 46 46 H 1.09006 * 109.58773 * 246.20765 * 25 11 9 47 47 H 1.08997 * 109.58838 * 6.62846 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8851 0.0000 6 1 3.6456 3.4236 -0.8423 7 6 5.6049 2.8869 -0.1251 8 7 3.6919 3.5407 1.2512 9 6 3.5705 4.8821 1.2997 10 8 3.8715 5.5551 0.3328 11 7 3.1152 5.4776 2.4198 12 6 2.8517 4.6902 3.6320 13 6 1.4181 4.9655 4.0968 14 6 1.2237 6.4733 4.2720 15 6 1.4398 7.1767 2.9301 16 1 0.7374 6.7827 2.1955 17 6 1.2164 8.6577 3.0967 18 1 0.9468 9.0578 4.0630 19 6 1.3553 9.5017 2.0154 20 7 1.6832 9.0145 0.8387 21 14 1.0777 11.3375 2.2219 22 1 2.3594 11.9943 2.5837 23 1 0.5716 11.9079 0.9476 24 1 0.0815 11.5695 3.2984 25 6 2.8789 6.9273 2.4538 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9289 0.8908 35 1 5.8936 2.3990 -1.0561 36 1 5.9682 3.9145 -0.1251 37 1 6.0392 2.3483 0.7171 38 1 3.5262 3.0097 2.0460 39 1 2.9667 3.6292 3.4106 40 1 3.5535 4.9783 4.4146 41 1 0.7160 4.5923 3.3512 42 1 1.2411 4.4628 5.0476 43 1 0.2118 6.6701 4.6263 44 1 1.9428 6.8501 4.9993 45 1 1.7805 9.6083 0.0779 46 1 3.5813 7.3959 3.1432 47 1 3.0119 7.3427 1.4549 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193050721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:37 Heat of formation + Delta-G solvation = -77.901660 kcal Electronic energy + Delta-G solvation = -23509.789191 eV Core-core repulsion = 20304.577006 eV Total energy + Delta-G solvation = -3205.212185 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.33170 -38.83462 -37.58070 -35.49396 -35.12442 -33.55665 -32.05119 -31.25322 -29.69254 -27.02837 -26.13352 -24.95461 -23.46107 -22.27273 -21.83982 -21.46181 -20.37860 -19.02676 -18.17653 -17.44418 -16.63254 -16.26986 -16.18646 -15.51900 -15.35301 -15.17258 -14.98961 -14.63635 -14.47086 -14.18791 -13.96745 -13.80470 -13.56830 -13.43265 -13.19224 -12.94068 -12.88268 -12.63586 -12.28817 -12.24850 -12.19941 -11.97196 -11.85651 -11.78547 -11.61440 -11.40608 -11.37283 -11.17078 -10.94222 -10.80128 -10.51671 -10.07269 -9.22046 -8.09679 -6.27121 1.40794 1.41232 1.52281 1.85140 2.32286 2.42410 3.08608 3.21200 3.70660 4.02567 4.07294 4.09770 4.17201 4.28049 4.32836 4.43301 4.47858 4.60305 4.61136 4.70976 4.79026 4.81205 4.84195 4.87372 4.93001 4.97058 5.08786 5.10362 5.11389 5.19642 5.27515 5.29285 5.30721 5.35269 5.38820 5.44203 5.54599 5.57146 5.67547 5.74361 5.90280 5.99361 6.21740 6.37461 6.86251 7.20770 7.43052 7.76044 8.93693 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018465 B = 0.004302 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.004749 B = 6506.697345 C = 6862.813439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.122 4.122 4 C -0.110 4.110 5 C 0.154 3.846 6 H 0.048 0.952 7 C -0.156 4.156 8 N -0.726 5.726 9 C 0.693 3.307 10 O -0.642 6.642 11 N -0.629 5.629 12 C 0.111 3.889 13 C -0.124 4.124 14 C -0.105 4.105 15 C 0.039 3.961 16 H -0.016 1.016 17 C -0.537 4.537 18 H 0.063 0.937 19 C 0.009 3.991 20 N -0.916 5.916 21 Si 0.958 3.042 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.261 1.261 25 C 0.145 3.855 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.024 0.976 37 H 0.074 0.926 38 H 0.405 0.595 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.104 0.896 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.259 0.741 46 H 0.031 0.969 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.956 -20.847 3.800 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.154 4.154 3 C -0.160 4.160 4 C -0.148 4.148 5 C 0.049 3.951 6 H 0.066 0.934 7 C -0.214 4.214 8 N -0.386 5.386 9 C 0.395 3.605 10 O -0.524 6.524 11 N -0.365 5.365 12 C -0.012 4.012 13 C -0.162 4.162 14 C -0.142 4.142 15 C 0.020 3.980 16 H 0.003 0.997 17 C -0.575 4.575 18 H 0.081 0.919 19 C -0.190 4.190 20 N -0.554 5.554 21 Si 0.783 3.217 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.186 1.186 25 C 0.022 3.978 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.044 0.956 37 H 0.093 0.907 38 H 0.244 0.756 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.123 0.877 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.049 0.951 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.182 -20.332 2.925 20.786 hybrid contribution -0.328 1.517 -0.156 1.560 sum 2.854 -18.815 2.770 19.231 Atomic orbital electron populations 1.21810 0.96421 1.01897 1.01311 1.21489 0.95465 0.95584 1.02854 1.21620 0.95609 0.97529 1.01234 1.21839 0.95226 0.92941 1.04787 1.20918 0.95086 0.93784 0.85265 0.93416 1.22128 0.95058 1.00898 1.03335 1.45225 1.75030 1.03665 1.14689 1.16245 0.78341 0.83004 0.82957 1.90866 1.58786 1.64806 1.37946 1.47680 1.67934 1.09357 1.11562 1.21844 0.97286 0.95589 0.86437 1.21893 0.95947 0.96259 1.02123 1.21502 1.00580 0.94942 0.97203 1.18985 0.91542 0.94418 0.93076 0.99738 1.21539 1.47353 0.93051 0.95566 0.91922 1.25911 0.94720 1.03470 0.94914 1.70112 1.48166 1.36371 1.00794 0.85560 0.78629 0.80002 0.77506 1.20054 1.21375 1.18555 1.21615 0.97339 0.76691 1.02164 0.93309 0.93744 0.91677 0.91243 0.90696 0.92986 0.93993 0.88649 0.89104 0.89951 0.95624 0.90733 0.75556 0.88210 0.90429 0.93241 0.87745 0.93036 0.92449 0.93234 0.95080 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.91 71.98 0.71 -1.78 16 2 C -0.12 -1.68 5.93 30.60 0.18 -1.50 16 3 C -0.12 -2.34 5.10 30.60 0.16 -2.19 16 4 C -0.11 -1.82 4.75 30.60 0.15 -1.67 16 5 C 0.15 4.01 2.53 44.99 0.11 4.12 16 6 H 0.05 1.61 7.66 -2.39 -0.02 1.59 16 7 C -0.16 -3.68 9.48 71.98 0.68 -3.00 16 8 N -0.73 -21.37 4.44 -457.81 -2.03 -23.40 16 9 C 0.69 29.56 8.25 179.05 1.48 31.04 16 10 O -0.64 -34.86 15.42 -3.99 -0.06 -34.93 16 11 N -0.63 -26.08 2.97 -836.05 -2.48 -28.56 16 12 C 0.11 3.15 6.43 86.36 0.56 3.71 16 13 C -0.12 -3.65 6.08 30.67 0.19 -3.46 16 14 C -0.10 -4.08 5.10 30.62 0.16 -3.92 16 15 C 0.04 2.03 2.26 -11.32 -0.03 2.00 16 16 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 17 C -0.54 -30.19 8.56 25.60 0.22 -29.97 16 18 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 19 C 0.01 0.53 5.30 84.65 0.45 0.98 16 20 N -0.92 -57.31 11.41 21.45 0.24 -57.06 16 21 Si 0.96 45.15 29.54 68.60 2.03 47.18 16 22 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 24 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 25 C 0.15 7.52 5.41 86.51 0.47 7.99 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 1.13 7.75 -2.39 -0.02 1.11 16 32 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.02 0.79 8.06 -2.39 -0.02 0.78 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.41 8.91 6.06 -92.70 -0.56 8.35 16 39 H 0.10 2.04 5.57 -2.39 -0.01 2.02 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 45 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 46 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 47 H 0.07 4.51 5.18 -2.39 -0.01 4.50 16 Total: -1.00 -76.37 364.97 3.53 -72.84 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.35 Total: 21.59 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 5.48 Total: 2.34 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -4.27 Total: -109.03 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.06 Total: -34.93 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -76.37 3.53 -72.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193050721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.058 kcal (2) G-P(sol) polarization free energy of solvation -76.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds