Wall clock time and date at job start Tue Mar 31 2020 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47495 * 2 1 4 4 C 1.52999 * 109.47450 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47193 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.47362 * 305.00484 * 5 4 3 7 7 C 1.52999 * 109.46933 * 185.00165 * 5 4 3 8 8 N 1.46505 * 109.47104 * 65.00574 * 5 4 3 9 9 C 1.34774 * 120.00153 * 205.00070 * 8 5 4 10 10 O 1.21589 * 119.99613 * 359.97438 * 9 8 5 11 11 N 1.34771 * 119.99922 * 179.97438 * 9 8 5 12 12 C 1.46503 * 119.99702 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.41459 * 35.14040 * 12 11 9 14 14 C 1.52963 * 109.41306 * 154.99942 * 12 11 9 15 15 C 1.53222 * 109.40418 * 183.70397 * 14 12 11 16 16 C 1.51270 * 108.53730 * 305.37144 * 15 14 12 17 17 C 1.37883 * 120.85413 * 231.32422 * 16 15 14 18 18 N 1.31516 * 119.99615 * 349.15638 * 17 16 15 19 19 Si 1.86801 * 120.00286 * 169.14885 * 17 16 15 20 20 H 1.48499 * 109.46807 * 354.66285 * 19 17 16 21 21 H 1.48498 * 109.46719 * 114.66214 * 19 17 16 22 22 H 1.48495 * 109.47315 * 234.66518 * 19 17 16 23 23 C 1.51271 * 118.30082 * 51.35022 * 16 15 14 24 24 C 1.53231 * 108.69444 * 308.55759 * 23 16 15 25 25 H 1.08991 * 109.47024 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46748 * 300.00083 * 1 2 3 27 27 H 1.09000 * 109.47058 * 59.99523 * 1 2 3 28 28 H 1.09004 * 109.47221 * 240.00150 * 2 1 3 29 29 H 1.09000 * 109.47546 * 120.00271 * 2 1 3 30 30 H 1.09004 * 109.46763 * 59.99870 * 3 2 1 31 31 H 1.09000 * 109.47357 * 300.00294 * 3 2 1 32 32 H 1.09002 * 109.46451 * 60.00127 * 4 3 2 33 33 H 1.09000 * 109.47400 * 300.00659 * 4 3 2 34 34 H 1.08992 * 109.47338 * 300.00101 * 7 5 4 35 35 H 1.09004 * 109.46840 * 60.00710 * 7 5 4 36 36 H 1.09006 * 109.46648 * 179.97438 * 7 5 4 37 37 H 0.96998 * 119.99695 * 24.99322 * 8 5 4 38 38 H 0.96993 * 120.00027 * 0.02562 * 11 9 8 39 39 H 1.09002 * 109.47752 * 63.72291 * 14 12 11 40 40 H 1.09000 * 109.49712 * 303.69362 * 14 12 11 41 41 H 1.09001 * 109.62972 * 185.66324 * 15 14 12 42 42 H 1.08997 * 109.63348 * 65.08697 * 15 14 12 43 43 H 0.97004 * 119.99729 * 179.97438 * 18 17 16 44 44 H 1.09006 * 109.62388 * 68.36542 * 23 16 15 45 45 H 1.08996 * 109.62970 * 188.74558 * 23 16 15 46 46 H 1.08996 * 109.48103 * 174.70320 * 24 23 16 47 47 H 1.09001 * 109.47662 * 294.74287 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0801 2.8849 0.0013 6 1 3.6458 3.4243 -0.8405 7 6 5.6050 2.8867 -0.1238 8 7 3.6921 3.5395 1.2532 9 6 3.5653 4.8804 1.3014 10 8 3.7733 5.5469 0.3060 11 7 3.2079 5.4825 2.4530 12 6 3.0706 6.9401 2.5055 13 1 2.6786 7.3016 1.5548 14 6 2.1060 7.3197 3.6304 15 6 1.8907 8.8367 3.6260 16 6 3.2406 9.5144 3.7072 17 6 3.4876 10.4876 4.6522 18 7 2.4949 10.9900 5.3536 19 14 5.2320 11.0925 4.9363 20 1 6.1747 10.2850 4.1212 21 1 5.3316 12.5200 4.5394 22 1 5.5762 10.9533 6.3741 23 6 4.3127 9.0974 2.7248 24 6 4.4450 7.5713 2.7607 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9564 -0.8899 32 1 3.9337 0.9285 -0.8892 33 1 3.9331 0.9287 0.8908 34 1 6.0392 2.3474 0.7179 35 1 5.8936 2.3997 -1.0554 36 1 5.9682 3.9145 -0.1238 37 1 3.5264 3.0078 2.0474 38 1 3.0423 4.9508 3.2472 39 1 2.5271 7.0151 4.5885 40 1 1.1515 6.8166 3.4764 41 1 1.2850 9.1231 4.4858 42 1 1.3874 9.1325 2.7055 43 1 2.6687 11.6744 6.0187 44 1 4.0336 9.4173 1.7208 45 1 5.2624 9.5539 3.0037 46 1 5.1466 7.2490 1.9913 47 1 4.8108 7.2611 3.7395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193074922.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:09 Heat of formation + Delta-G solvation = -74.114718 kcal Electronic energy + Delta-G solvation = -22780.672860 eV Core-core repulsion = 19575.624889 eV Total energy + Delta-G solvation = -3205.047970 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.88011 -37.53483 -36.38152 -34.48433 -33.61728 -31.89598 -30.69777 -29.60983 -28.99354 -26.95317 -24.43156 -22.51525 -21.48159 -21.30057 -20.97091 -20.36724 -19.47713 -17.99368 -16.43168 -16.01085 -15.54858 -14.93952 -14.62583 -14.42022 -14.38748 -14.05533 -13.54347 -13.18016 -13.15454 -12.87577 -12.62168 -12.52117 -12.29424 -12.14330 -12.08239 -11.62082 -11.57918 -11.34278 -11.14763 -10.95169 -10.81148 -10.78816 -10.68287 -10.65419 -10.11788 -9.97275 -9.74158 -9.36539 -9.04748 -8.94343 -8.73800 -8.38949 -8.14001 -6.09298 -3.97334 3.03442 3.28550 3.38516 3.40292 3.60985 4.37750 4.41481 4.57647 4.68081 4.74659 4.97690 5.05721 5.16673 5.18861 5.33352 5.46480 5.52149 5.57673 5.58873 5.70290 5.73226 5.76377 5.88524 5.93136 5.96774 6.06015 6.11827 6.21369 6.27293 6.53126 6.57731 6.70617 6.77158 6.83352 6.94989 7.01811 7.16492 7.27296 7.41411 7.51834 7.66632 7.78019 7.83615 8.39219 8.42712 8.98715 9.00948 9.57578 11.00290 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028138 B = 0.003331 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.841470 B = 8405.041829 C = 9123.962571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.126 4.126 5 C 0.160 3.840 6 H 0.086 0.914 7 C -0.164 4.164 8 N -0.748 5.748 9 C 0.700 3.300 10 O -0.593 6.593 11 N -0.741 5.741 12 C 0.172 3.828 13 H 0.077 0.923 14 C -0.114 4.114 15 C 0.015 3.985 16 C -0.487 4.487 17 C 0.076 3.924 18 N -0.888 5.888 19 Si 0.878 3.122 20 H -0.255 1.255 21 H -0.283 1.283 22 H -0.287 1.287 23 C -0.023 4.023 24 C -0.113 4.113 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.391 0.609 38 H 0.388 0.612 39 H 0.052 0.948 40 H 0.035 0.965 41 H 0.057 0.943 42 H 0.007 0.993 43 H 0.263 0.737 44 H 0.019 0.981 45 H 0.040 0.960 46 H 0.036 0.964 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.621 -21.401 -7.046 22.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.164 4.164 5 C 0.055 3.945 6 H 0.104 0.896 7 C -0.223 4.223 8 N -0.404 5.404 9 C 0.400 3.600 10 O -0.471 6.471 11 N -0.394 5.394 12 C 0.069 3.931 13 H 0.095 0.905 14 C -0.152 4.152 15 C -0.023 4.023 16 C -0.506 4.506 17 C -0.126 4.126 18 N -0.526 5.526 19 Si 0.706 3.294 20 H -0.180 1.180 21 H -0.209 1.209 22 H -0.213 1.213 23 C -0.062 4.062 24 C -0.152 4.152 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.224 0.776 38 H 0.220 0.780 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.025 0.975 43 H 0.073 0.927 44 H 0.037 0.963 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.749 -20.618 -7.840 22.071 hybrid contribution 0.799 -0.196 1.104 1.377 sum 1.548 -20.814 -6.736 21.932 Atomic orbital electron populations 1.21779 0.95937 1.01411 1.02011 1.21536 0.95896 0.96956 1.01765 1.21629 0.94950 0.96534 1.02728 1.21914 0.96013 0.95670 1.02782 1.20748 0.94444 0.92204 0.87114 0.89574 1.22205 0.95891 1.02810 1.01372 1.45264 1.75992 1.05629 1.13520 1.16060 0.78102 0.81574 0.84227 1.90900 1.57813 1.63683 1.34688 1.45643 1.73726 1.09309 1.10707 1.20986 0.96797 0.75291 1.00058 0.90531 1.21940 0.95705 1.01099 0.96504 1.19314 0.96643 0.88369 0.97987 1.20058 0.96501 1.19471 1.14563 1.24840 0.96869 0.95379 0.95558 1.69903 1.30807 1.27400 1.24456 0.86759 0.86231 0.78741 0.77681 1.18028 1.20934 1.21301 1.19930 0.97478 0.91343 0.97399 1.21985 0.95078 0.99009 0.99123 0.92947 0.92676 0.92738 0.92192 0.92183 0.91691 0.91842 0.90575 0.91568 0.92806 0.92061 0.91807 0.77608 0.77961 0.92904 0.94639 0.92483 0.97461 0.92720 0.96285 0.94157 0.94526 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -0.85 5.93 -26.73 -0.16 -1.00 16 3 C -0.12 -0.96 5.10 -26.73 -0.14 -1.10 16 4 C -0.13 -0.95 4.75 -26.73 -0.13 -1.08 16 5 C 0.16 1.71 2.57 -67.93 -0.17 1.54 16 6 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 7 C -0.16 -1.72 9.48 37.16 0.35 -1.36 16 8 N -0.75 -8.85 4.53 -58.67 -0.27 -9.12 16 9 C 0.70 11.66 8.49 -86.93 -0.74 10.92 16 10 O -0.59 -12.48 15.67 5.29 0.08 -12.40 16 11 N -0.74 -12.02 5.08 -58.50 -0.30 -12.31 16 12 C 0.17 3.46 2.35 -67.75 -0.16 3.30 16 13 H 0.08 1.73 7.58 -51.93 -0.39 1.34 16 14 C -0.11 -2.34 5.41 -26.64 -0.14 -2.48 16 15 C 0.01 0.37 5.93 -27.49 -0.16 0.20 16 16 C -0.49 -12.92 5.48 -98.92 -0.54 -13.46 16 17 C 0.08 2.09 5.44 -17.82 -0.10 1.99 16 18 N -0.89 -25.57 12.82 55.43 0.71 -24.86 16 19 Si 0.88 21.00 27.95 -169.99 -4.75 16.25 16 20 H -0.26 -5.90 5.57 56.52 0.32 -5.58 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 C -0.02 -0.57 5.64 -27.48 -0.15 -0.73 16 24 C -0.11 -2.45 5.54 -26.42 -0.15 -2.59 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.57 7.75 -51.93 -0.40 0.17 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.39 3.56 8.62 -40.82 -0.35 3.21 16 38 H 0.39 5.09 8.61 -40.82 -0.35 4.74 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 1.53 7.19 -51.93 -0.37 1.16 16 42 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.04 0.97 4.35 -51.93 -0.23 0.75 16 46 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -30.80 366.29 -9.92 -40.72 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -8.90 Total: 2.77 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -2.02 Total: -6.56 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.15 Total: -46.29 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.75 Total: 16.25 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.80 -9.92 -40.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193074922.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.395 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds