Wall clock time and date at job start Tue Mar 31 2020 05:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46926 * 2 1 4 4 C 1.52997 * 109.46571 * 180.02562 * 3 2 1 5 5 C 1.53010 * 109.46903 * 180.02562 * 4 3 2 6 6 H 1.08988 * 109.46890 * 305.00318 * 5 4 3 7 7 C 1.52996 * 109.47229 * 184.99805 * 5 4 3 8 8 N 1.46504 * 109.46846 * 64.99973 * 5 4 3 9 9 C 1.34776 * 119.99806 * 204.99869 * 8 5 4 10 10 O 1.21587 * 119.99618 * 0.02562 * 9 8 5 11 11 N 1.34777 * 120.00175 * 180.02562 * 9 8 5 12 12 C 1.46489 * 120.00204 * 174.52121 * 11 9 8 13 13 C 1.50702 * 110.01590 * 63.81298 * 12 11 9 14 14 H 1.08001 * 120.00109 * 243.24403 * 13 12 11 15 15 C 1.37880 * 119.99981 * 63.25067 * 13 12 11 16 16 N 1.31510 * 119.99767 * 354.25295 * 15 13 12 17 17 Si 1.86800 * 119.99966 * 174.25010 * 15 13 12 18 18 H 1.48504 * 109.46873 * 90.00100 * 17 15 13 19 19 H 1.48494 * 109.47159 * 209.99801 * 17 15 13 20 20 H 1.48491 * 109.47135 * 330.00270 * 17 15 13 21 21 C 1.54266 * 110.03320 * 302.42313 * 12 11 9 22 22 C 1.54968 * 104.16002 * 217.13797 * 21 12 11 23 23 C 1.54882 * 102.77979 * 37.88304 * 22 21 12 24 24 C 1.53878 * 110.03218 * 185.20452 * 12 11 9 25 25 H 1.09004 * 109.47446 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47055 * 299.99749 * 1 2 3 27 27 H 1.09004 * 109.47290 * 59.99631 * 1 2 3 28 28 H 1.09001 * 109.47055 * 240.00251 * 2 1 3 29 29 H 1.08996 * 109.46958 * 120.00339 * 2 1 3 30 30 H 1.09001 * 109.47049 * 60.00247 * 3 2 1 31 31 H 1.08993 * 109.47078 * 299.99934 * 3 2 1 32 32 H 1.09001 * 109.47249 * 60.00349 * 4 3 2 33 33 H 1.09001 * 109.47682 * 299.99778 * 4 3 2 34 34 H 1.08994 * 109.47196 * 180.02562 * 7 5 4 35 35 H 1.09005 * 109.47204 * 60.00002 * 7 5 4 36 36 H 1.09004 * 109.47315 * 300.00254 * 7 5 4 37 37 H 0.96998 * 120.00240 * 25.00280 * 8 5 4 38 38 H 0.97007 * 119.99557 * 354.52549 * 11 9 8 39 39 H 0.97004 * 119.99882 * 185.00767 * 16 15 13 40 40 H 1.08998 * 110.48559 * 335.78009 * 21 12 11 41 41 H 1.08999 * 110.48851 * 98.43030 * 21 12 11 42 42 H 1.09005 * 110.71516 * 279.57287 * 22 21 12 43 43 H 1.08998 * 110.92226 * 156.29917 * 22 21 12 44 44 H 1.08995 * 110.49100 * 203.40316 * 23 22 21 45 45 H 1.09000 * 110.48535 * 80.76488 * 23 22 21 46 46 H 1.09002 * 110.02865 * 238.56561 * 24 12 11 47 47 H 1.08992 * 110.03511 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4424 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 -0.8412 7 6 5.6047 2.8869 -0.1263 8 7 3.6929 3.5392 1.2524 9 6 3.5661 4.8801 1.3011 10 8 3.7726 5.5467 0.3054 11 7 3.2106 5.4821 2.4533 12 6 3.1892 6.9443 2.5396 13 6 2.1534 7.5015 1.5976 14 1 2.4551 8.1359 0.7772 15 6 0.8204 7.2017 1.7830 16 7 0.4631 6.3407 2.7106 17 14 -0.4778 8.0183 0.7166 18 1 -0.7161 7.1914 -0.4936 19 1 -1.7416 8.1458 1.4858 20 1 -0.0076 9.3669 0.3100 21 6 4.5801 7.5144 2.1929 22 6 4.7472 8.7176 3.1552 23 6 4.0945 8.2040 4.4625 24 6 2.8803 7.3827 3.9819 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.9329 0.9288 -0.8909 33 1 3.9337 0.9285 0.8891 34 1 5.9681 3.9145 -0.1254 35 1 5.8927 2.4001 -1.0581 36 1 6.0397 2.3473 0.7150 37 1 3.5279 3.0073 2.0466 38 1 2.9688 4.9470 3.2255 39 1 -0.4661 6.0746 2.7933 40 1 5.3543 6.7694 2.3761 41 1 4.6079 7.8479 1.1556 42 1 4.2168 9.5912 2.7760 43 1 5.8012 8.9461 3.3133 44 1 3.7688 9.0406 5.0805 45 1 4.7901 7.5702 5.0127 46 1 1.9816 7.9993 4.0003 47 1 2.7467 6.5075 4.6177 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193091455.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:41 Heat of formation + Delta-G solvation = -64.208485 kcal Electronic energy + Delta-G solvation = -23828.349864 eV Core-core repulsion = 20623.731460 eV Total energy + Delta-G solvation = -3204.618404 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.11964 -37.42609 -36.00190 -33.94778 -32.64740 -31.86860 -30.33499 -28.63281 -27.60830 -26.88038 -24.12632 -23.85322 -21.11944 -20.85974 -19.94536 -19.59122 -18.71317 -17.13549 -16.41570 -15.63115 -15.01088 -14.64623 -14.30254 -14.24029 -13.96492 -13.74045 -13.36277 -13.00653 -12.76639 -12.63295 -12.34631 -12.24204 -12.13907 -11.76291 -11.40699 -11.23761 -10.99783 -10.87896 -10.79606 -10.64850 -10.60172 -10.43519 -10.33950 -10.24939 -10.12751 -9.95838 -9.66324 -9.29545 -9.11337 -8.72335 -8.34132 -8.17911 -7.24838 -5.92811 -3.95084 3.36034 3.42346 3.47701 3.86258 4.50474 4.62346 4.77497 5.01526 5.13092 5.23909 5.33675 5.41771 5.54572 5.66131 5.72018 5.75959 5.80707 5.80726 5.87000 5.90656 5.91988 5.96485 6.04171 6.09181 6.21739 6.32219 6.45391 6.49654 6.51499 6.52256 6.61068 6.68344 6.78356 6.88696 6.95360 7.12381 7.17857 7.36236 7.44500 7.65520 7.97204 8.10713 8.34066 8.53990 9.04598 9.44210 9.69324 10.07615 11.11521 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.005975 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.128957 B = 4684.742719 C = 5889.130173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.121 4.121 4 C -0.123 4.123 5 C 0.163 3.837 6 H 0.082 0.918 7 C -0.160 4.160 8 N -0.757 5.757 9 C 0.702 3.298 10 O -0.592 6.592 11 N -0.706 5.706 12 C 0.308 3.692 13 C -0.485 4.485 14 H 0.057 0.943 15 C 0.070 3.930 16 N -0.884 5.884 17 Si 0.886 3.114 18 H -0.284 1.284 19 H -0.289 1.289 20 H -0.274 1.274 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.126 4.126 24 C -0.093 4.093 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.383 0.617 38 H 0.373 0.627 39 H 0.256 0.744 40 H 0.039 0.961 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.049 0.951 45 H 0.048 0.952 46 H 0.073 0.927 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.230 -10.015 0.311 11.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.158 4.158 4 C -0.161 4.161 5 C 0.057 3.943 6 H 0.100 0.900 7 C -0.219 4.219 8 N -0.414 5.414 9 C 0.402 3.598 10 O -0.470 6.470 11 N -0.356 5.356 12 C 0.225 3.775 13 C -0.525 4.525 14 H 0.075 0.925 15 C -0.132 4.132 16 N -0.522 5.522 17 Si 0.715 3.285 18 H -0.210 1.210 19 H -0.215 1.215 20 H -0.199 1.199 21 C -0.151 4.151 22 C -0.157 4.157 23 C -0.164 4.164 24 C -0.131 4.131 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.216 0.784 38 H 0.205 0.795 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.092 0.908 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.257 -9.358 -0.478 10.745 hybrid contribution -1.156 -0.314 0.104 1.202 sum 4.101 -9.672 -0.374 10.512 Atomic orbital electron populations 1.21779 0.96095 1.01061 1.02163 1.21523 0.95784 0.97234 1.01399 1.21614 0.95030 0.96101 1.03101 1.21882 0.95981 0.96168 1.02077 1.20577 0.93737 0.91828 0.88180 0.89986 1.22189 0.96641 1.02421 1.00638 1.45354 1.77236 1.06380 1.12464 1.16004 0.78340 0.80668 0.84743 1.90800 1.58544 1.63306 1.34307 1.45977 1.70184 1.08395 1.11089 1.18441 0.90839 0.75660 0.92530 1.21321 0.90212 1.28968 1.11977 0.92455 1.24911 0.98368 0.95152 0.94801 1.69929 1.17094 1.32261 1.32954 0.86678 0.81110 0.80206 0.80520 1.21011 1.21545 1.19906 1.22639 0.97779 0.95719 0.98954 1.22413 0.98194 0.98947 0.96158 1.22408 0.98289 0.98917 0.96813 1.22164 0.96593 0.98294 0.96086 0.93196 0.92563 0.92807 0.92473 0.92352 0.91276 0.91999 0.91204 0.91951 0.91962 0.92701 0.93241 0.78448 0.79541 0.93448 0.94244 0.91805 0.91781 0.93640 0.93183 0.93370 0.90799 0.93815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.12 -1.31 5.93 -26.73 -0.16 -1.47 16 3 C -0.12 -1.56 5.10 -26.73 -0.14 -1.70 16 4 C -0.12 -1.47 4.75 -26.73 -0.13 -1.59 16 5 C 0.16 2.51 2.57 -67.93 -0.17 2.34 16 6 H 0.08 1.51 7.57 -51.94 -0.39 1.12 16 7 C -0.16 -2.24 9.48 37.16 0.35 -1.89 16 8 N -0.76 -13.24 4.53 -58.67 -0.27 -13.51 16 9 C 0.70 15.86 7.92 -86.92 -0.69 15.17 16 10 O -0.59 -15.66 14.21 5.29 0.08 -15.59 16 11 N -0.71 -15.87 4.47 -52.45 -0.23 -16.10 16 12 C 0.31 7.35 0.50 -131.86 -0.07 7.28 16 13 C -0.49 -13.32 6.82 -34.44 -0.23 -13.56 16 14 H 0.06 1.68 7.50 -52.49 -0.39 1.28 16 15 C 0.07 1.91 4.90 -17.82 -0.09 1.82 16 16 N -0.88 -23.86 11.86 55.43 0.66 -23.20 16 17 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 18 H -0.28 -7.23 7.11 56.52 0.40 -6.82 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 21 C -0.11 -2.49 4.81 -25.03 -0.12 -2.61 16 22 C -0.12 -2.27 6.91 -24.70 -0.17 -2.44 16 23 C -0.13 -2.33 6.83 -25.07 -0.17 -2.50 16 24 C -0.09 -2.03 5.33 -25.61 -0.14 -2.17 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.03 7.75 -51.93 -0.40 0.62 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.38 5.81 8.62 -40.82 -0.35 5.46 16 38 H 0.37 7.80 8.10 -40.82 -0.33 7.47 16 39 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 40 H 0.04 0.85 7.99 -51.93 -0.41 0.44 16 41 H 0.06 1.56 7.43 -51.93 -0.39 1.17 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 1.80 7.07 -51.93 -0.37 1.43 16 47 H 0.04 0.93 7.45 -51.93 -0.39 0.54 16 LS Contribution 367.69 15.07 5.54 5.54 Total: -1.00 -29.91 367.69 -9.71 -39.61 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -8.90 Total: 10.92 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -1.55 Total: -4.62 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.16 Total: -52.81 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.08 Total: -15.59 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.91 -9.71 -39.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193091455.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.595 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds