Wall clock time and date at job start Tue Mar 31 2020 06:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47330 * 2 1 4 4 C 1.53000 * 109.47045 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47638 * 305.00605 * 4 3 2 6 6 C 1.53005 * 109.46793 * 65.00247 * 4 3 2 7 7 C 1.53005 * 109.46755 * 184.81059 * 6 4 3 8 8 C 1.50701 * 109.46980 * 185.00016 * 4 3 2 9 9 O 1.21275 * 119.99878 * 275.24807 * 8 4 3 10 10 N 1.34779 * 119.99652 * 95.25380 * 8 4 3 11 11 C 1.47022 * 125.65101 * 354.98455 * 10 8 4 12 12 C 1.54325 * 107.27302 * 181.03746 * 11 10 8 13 13 C 1.55450 * 102.96652 * 22.19113 * 12 11 10 14 14 H 1.08994 * 111.01487 * 82.52605 * 13 12 11 15 15 N 1.46499 * 111.11486 * 206.46480 * 13 12 11 16 16 C 1.46508 * 120.00119 * 52.10243 * 15 13 12 17 17 C 1.36931 * 120.00155 * 232.10135 * 15 13 12 18 18 H 1.07999 * 119.99858 * 22.00397 * 17 15 13 19 19 C 1.38816 * 120.00066 * 202.00637 * 17 15 13 20 20 N 1.31615 * 119.99932 * 10.60280 * 19 17 15 21 21 Si 1.86801 * 119.99852 * 190.60563 * 19 17 15 22 22 H 1.48501 * 109.47469 * 89.99479 * 21 19 17 23 23 H 1.48500 * 109.46952 * 210.00192 * 21 19 17 24 24 H 1.48503 * 109.47088 * 329.99735 * 21 19 17 25 25 C 1.47423 * 125.64764 * 174.95620 * 10 8 4 26 26 H 1.09001 * 109.47171 * 59.99748 * 1 2 3 27 27 H 1.09003 * 109.47558 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47011 * 300.00315 * 1 2 3 29 29 H 1.09004 * 109.47011 * 239.99684 * 2 1 3 30 30 H 1.08997 * 109.46699 * 120.00282 * 2 1 3 31 31 H 1.09006 * 109.46878 * 60.00142 * 3 2 1 32 32 H 1.08997 * 109.47460 * 299.99817 * 3 2 1 33 33 H 1.08997 * 109.46859 * 304.81012 * 6 4 3 34 34 H 1.08999 * 109.47215 * 64.81542 * 6 4 3 35 35 H 1.09002 * 109.46920 * 174.60281 * 7 6 4 36 36 H 1.08994 * 109.46983 * 294.59817 * 7 6 4 37 37 H 1.08998 * 109.46827 * 54.60349 * 7 6 4 38 38 H 1.09007 * 109.87803 * 300.45455 * 11 10 8 39 39 H 1.09002 * 109.88394 * 61.61466 * 11 10 8 40 40 H 1.08998 * 110.71980 * 140.55091 * 12 11 10 41 41 H 1.08997 * 110.72073 * 263.65284 * 12 11 10 42 42 H 1.08997 * 109.47192 * 94.69053 * 16 15 13 43 43 H 1.09000 * 109.47231 * 214.69889 * 16 15 13 44 44 H 1.09004 * 109.46774 * 334.69785 * 16 15 13 45 45 H 0.97003 * 119.99477 * 180.02562 * 20 19 17 46 46 H 1.09003 * 110.36741 * 274.73517 * 25 10 8 47 47 H 1.08996 * 110.36906 * 36.94136 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9331 0.8530 0.8426 6 6 4.0805 0.8326 -1.3065 7 6 5.6057 0.7221 -1.2562 8 6 4.0724 2.8578 0.1245 9 8 4.1844 3.5502 -0.8649 10 7 4.3972 3.3540 1.3347 11 6 4.2133 2.6655 2.6207 12 6 4.7009 3.6241 3.7275 13 6 4.6059 5.0189 3.0478 14 1 3.5899 5.4102 3.0989 15 7 5.5594 5.9605 3.6397 16 6 6.9739 5.5962 3.7537 17 6 5.1287 7.1811 4.0865 18 1 4.0887 7.3278 4.3380 19 6 6.0288 8.2299 4.2160 20 7 7.2423 8.1210 3.7182 21 14 5.5177 9.7958 5.0970 22 1 5.8317 9.6752 6.5434 23 1 6.2568 10.9496 4.5244 24 1 4.0581 10.0076 4.9233 25 6 4.9965 4.6769 1.5883 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8901 32 1 1.6768 1.9563 -0.8900 33 1 3.6485 -0.1595 -1.4376 34 1 3.7897 1.4689 -2.1423 35 1 5.9618 0.2011 -2.1450 36 1 6.0413 1.7206 -1.2216 37 1 5.9006 0.1659 -0.3664 38 1 3.1586 2.4335 2.7694 39 1 4.8027 1.7488 2.6381 40 1 4.0459 3.5739 4.5973 41 1 5.7297 3.3982 4.0077 42 1 7.5190 5.9817 2.8921 43 1 7.3871 6.0249 4.6667 44 1 7.0680 4.5107 3.7870 45 1 7.8713 8.8538 3.8091 46 1 6.0807 4.6279 1.4872 47 1 4.5854 5.4174 0.9022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193108942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:59 Heat of formation + Delta-G solvation = -33.541439 kcal Electronic energy + Delta-G solvation = -23347.313983 eV Core-core repulsion = 20144.025401 eV Total energy + Delta-G solvation = -3203.288581 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.05581 -37.75198 -36.10179 -34.79456 -33.12161 -31.64871 -29.82136 -29.31811 -27.82103 -26.06510 -24.86317 -23.55010 -22.45559 -22.17545 -20.83086 -19.29693 -18.54976 -17.11368 -17.03096 -15.83872 -15.36605 -15.17624 -14.89407 -14.49069 -14.08758 -13.59818 -13.37346 -13.32719 -13.17208 -13.05588 -12.64365 -12.40335 -12.30847 -12.07953 -11.93692 -11.81283 -11.52951 -11.43047 -11.23596 -10.90170 -10.88476 -10.84104 -10.78118 -10.54243 -10.50174 -10.39765 -10.24589 -9.88945 -9.80985 -9.38456 -8.60094 -8.25427 -6.82948 -5.76490 -3.23864 2.89459 3.28411 3.37211 3.43343 3.44708 4.44309 4.50530 4.60313 4.75236 4.92481 4.99648 5.01525 5.12945 5.23352 5.27858 5.36047 5.37493 5.49025 5.52279 5.57678 5.62476 5.64675 5.70072 5.74149 5.81181 5.88923 5.94278 5.97005 6.01963 6.04410 6.13534 6.21486 6.25695 6.30254 6.40151 6.57799 6.66956 6.80642 6.88492 7.36113 7.70183 7.78132 7.89043 8.34022 8.47994 9.18660 9.80470 10.28651 11.28022 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025724 B = 0.003711 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.224057 B = 7543.566149 C = 7951.413777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.108 4.108 4 C -0.104 4.104 5 H 0.087 0.913 6 C -0.109 4.109 7 C -0.155 4.155 8 C 0.530 3.470 9 O -0.546 6.546 10 N -0.615 5.615 11 C 0.106 3.894 12 C -0.154 4.154 13 C 0.174 3.826 14 H 0.077 0.923 15 N -0.586 5.586 16 C 0.160 3.840 17 C -0.260 4.260 18 H 0.071 0.929 19 C 0.004 3.996 20 N -0.906 5.906 21 Si 0.909 3.091 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.085 3.915 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.030 0.970 43 H 0.047 0.953 44 H 0.001 0.999 45 H 0.254 0.746 46 H 0.066 0.934 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.352 -18.083 -4.588 20.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.146 4.146 4 C -0.125 4.125 5 H 0.105 0.895 6 C -0.147 4.147 7 C -0.212 4.212 8 C 0.318 3.682 9 O -0.424 6.424 10 N -0.348 5.348 11 C -0.018 4.018 12 C -0.194 4.194 13 C 0.063 3.937 14 H 0.095 0.905 15 N -0.306 5.306 16 C 0.016 3.984 17 C -0.390 4.390 18 H 0.089 0.911 19 C -0.195 4.195 20 N -0.551 5.551 21 Si 0.738 3.262 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.040 4.040 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.020 0.980 45 H 0.064 0.936 46 H 0.084 0.916 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.136 -17.569 -5.158 20.037 hybrid contribution -0.055 0.891 0.513 1.030 sum -8.190 -16.678 -4.645 19.152 Atomic orbital electron populations 1.21776 0.95791 1.01489 1.01991 1.21576 0.95864 0.96355 1.02236 1.21519 0.92567 0.97485 1.03024 1.21406 0.97023 0.93650 1.00428 0.89519 1.21476 0.96056 1.00597 0.96527 1.21805 0.95857 1.02231 1.01334 1.20240 0.77338 0.88785 0.81798 1.90672 1.54462 1.60830 1.36415 1.48595 1.61698 1.18964 1.05589 1.22000 1.00195 0.95957 0.83657 1.23239 1.02257 0.97042 0.96895 1.21485 0.94692 0.88852 0.88664 0.90517 1.43860 1.04039 1.14521 1.68164 1.20845 0.83956 0.92430 1.01149 1.19254 0.94993 0.87083 1.37636 0.91131 1.25056 0.96694 0.97696 1.00017 1.70075 1.05693 1.32096 1.47229 0.86194 0.77884 0.82823 0.79251 1.21436 1.21685 1.20438 1.23122 0.98039 0.82613 1.00210 0.92711 0.92807 0.92670 0.91575 0.91893 0.91542 0.91123 0.91186 0.90707 0.92637 0.92346 0.92981 0.91965 0.92207 0.90634 0.90313 0.95189 0.93430 0.98046 0.93622 0.91618 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -0.97 5.69 -26.73 -0.15 -1.12 16 3 C -0.11 -1.11 4.66 -26.73 -0.12 -1.23 16 4 C -0.10 -1.21 1.83 -91.77 -0.17 -1.38 16 5 H 0.09 0.89 6.95 -51.93 -0.36 0.53 16 6 C -0.11 -1.19 5.03 -26.73 -0.13 -1.33 16 7 C -0.15 -1.75 9.63 37.16 0.36 -1.39 16 8 C 0.53 8.64 5.96 -10.98 -0.07 8.58 16 9 O -0.55 -11.04 16.20 5.56 0.09 -10.95 16 10 N -0.61 -10.09 3.33 -170.52 -0.57 -10.66 16 11 C 0.11 1.40 6.15 -3.06 -0.02 1.38 16 12 C -0.15 -2.41 6.48 -24.74 -0.16 -2.57 16 13 C 0.17 3.46 3.56 -65.62 -0.23 3.23 16 14 H 0.08 1.55 7.94 -51.93 -0.41 1.14 16 15 N -0.59 -14.27 2.97 -170.85 -0.51 -14.77 16 16 C 0.16 3.85 7.86 59.85 0.47 4.32 16 17 C -0.26 -7.01 9.64 -15.06 -0.15 -7.16 16 18 H 0.07 1.85 7.82 -52.49 -0.41 1.44 16 19 C 0.00 0.11 5.15 -17.43 -0.09 0.02 16 20 N -0.91 -26.16 10.52 55.49 0.58 -25.58 16 21 Si 0.91 21.66 29.57 -169.99 -5.03 16.64 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 25 C 0.08 1.68 6.52 -2.53 -0.02 1.66 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.49 6.47 -51.93 -0.34 0.15 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.60 6.35 -51.93 -0.33 0.27 16 34 H 0.07 0.94 7.69 -51.93 -0.40 0.54 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.82 7.38 -51.93 -0.38 0.44 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.68 7.72 -51.93 -0.40 0.28 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.08 1.28 6.00 -51.93 -0.31 0.97 16 42 H 0.03 0.79 7.40 -51.93 -0.38 0.40 16 43 H 0.05 1.23 7.17 -51.93 -0.37 0.86 16 44 H 0.00 0.02 5.97 -51.93 -0.31 -0.29 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 46 H 0.07 1.40 7.31 -51.93 -0.38 1.02 16 47 H 0.07 1.56 7.99 -51.93 -0.41 1.15 16 LS Contribution 361.89 15.07 5.45 5.45 Total: -1.00 -30.69 361.89 -8.65 -39.34 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -8.57 Total: -1.71 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.11 Total: 2.25 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.49 Total: -51.01 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.69 -8.65 -39.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193108942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.803 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds