Wall clock time and date at job start Tue Mar 31 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47093 * 2 1 4 4 C 1.52999 * 109.46912 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46898 * 305.00139 * 4 3 2 6 6 C 1.52993 * 109.47193 * 65.00247 * 4 3 2 7 7 C 1.53006 * 109.47013 * 185.47001 * 6 4 3 8 8 C 1.50701 * 109.46811 * 185.00591 * 4 3 2 9 9 O 1.21284 * 119.99882 * 275.42101 * 8 4 3 10 10 N 1.34772 * 120.00388 * 95.43389 * 8 4 3 11 11 C 1.47026 * 125.64879 * 354.82137 * 10 8 4 12 12 C 1.54323 * 107.27425 * 179.00349 * 11 10 8 13 13 C 1.55162 * 102.93938 * 337.80103 * 12 11 10 14 14 H 1.08998 * 111.00568 * 277.39523 * 13 12 11 15 15 N 1.46502 * 111.00117 * 153.57968 * 13 12 11 16 16 C 1.46504 * 119.99960 * 304.58119 * 15 13 12 17 17 C 1.36938 * 119.99851 * 124.58700 * 15 13 12 18 18 H 1.07996 * 120.00100 * 345.18245 * 17 15 13 19 19 C 1.38813 * 119.99564 * 165.45990 * 17 15 13 20 20 N 1.31619 * 120.00293 * 343.76100 * 19 17 15 21 21 Si 1.86804 * 119.99524 * 163.76417 * 19 17 15 22 22 H 1.48500 * 109.47306 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47158 * 119.99730 * 21 19 17 24 24 H 1.48499 * 109.46750 * 240.00045 * 21 19 17 25 25 C 1.47471 * 125.63150 * 174.84717 * 10 8 4 26 26 H 1.09001 * 109.46720 * 299.99891 * 1 2 3 27 27 H 1.09003 * 109.46932 * 59.99456 * 1 2 3 28 28 H 1.08993 * 109.47430 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46489 * 240.00520 * 2 1 3 30 30 H 1.08997 * 109.47356 * 120.00589 * 2 1 3 31 31 H 1.09008 * 109.46846 * 60.00440 * 3 2 1 32 32 H 1.08997 * 109.47501 * 300.00501 * 3 2 1 33 33 H 1.08998 * 109.47421 * 305.46765 * 6 4 3 34 34 H 1.08997 * 109.47280 * 65.46828 * 6 4 3 35 35 H 1.09007 * 109.46677 * 302.80812 * 7 6 4 36 36 H 1.08994 * 109.47035 * 62.81094 * 7 6 4 37 37 H 1.09003 * 109.46950 * 182.81591 * 7 6 4 38 38 H 1.08995 * 109.88156 * 59.58005 * 11 10 8 39 39 H 1.09009 * 109.87825 * 298.41493 * 11 10 8 40 40 H 1.09000 * 110.71927 * 219.44486 * 12 11 10 41 41 H 1.08992 * 110.72450 * 96.16621 * 12 11 10 42 42 H 1.08999 * 109.46947 * 264.91479 * 16 15 13 43 43 H 1.09002 * 109.46798 * 24.91312 * 16 15 13 44 44 H 1.08995 * 109.46897 * 144.91098 * 16 15 13 45 45 H 0.96998 * 119.99432 * 179.97438 * 20 19 17 46 46 H 1.09001 * 110.34793 * 85.22840 * 25 10 8 47 47 H 1.08997 * 110.40520 * 322.89772 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8528 0.8409 6 6 4.0795 0.8331 -1.3083 7 6 5.6033 0.7075 -1.2527 8 6 4.0724 2.8578 0.1233 9 8 4.1805 3.5517 -0.8655 10 7 4.4017 3.3526 1.3329 11 6 4.2198 2.6636 2.6190 12 6 4.7603 3.5994 3.7207 13 6 5.7335 4.5250 2.9436 14 1 6.7057 4.0494 2.8144 15 7 5.8709 5.8215 3.6118 16 6 4.6815 6.6269 3.8998 17 6 7.1112 6.2806 3.9670 18 1 7.9539 5.6053 3.9790 19 6 7.2841 7.6126 4.3172 20 7 6.3607 8.4990 4.0104 21 14 8.8273 8.1472 5.2240 22 1 9.7024 6.9687 5.4493 23 1 9.5542 9.1559 4.4120 24 1 8.4519 8.7416 6.5320 25 6 5.0038 4.6749 1.5854 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.6383 -0.1542 -1.4452 34 1 3.7980 1.4756 -2.1425 35 1 6.0421 1.6878 -1.0660 36 1 5.8826 0.0254 -0.4498 37 1 5.9708 0.3201 -2.2030 38 1 4.7785 1.7278 2.6204 39 1 3.1610 2.4660 2.7871 40 1 5.2943 3.0307 4.4819 41 1 3.9513 4.1778 4.1666 42 1 4.5299 7.3503 3.0987 43 1 3.8104 5.9757 3.9711 44 1 4.8195 7.1538 4.8439 45 1 6.4815 9.4297 4.2555 46 1 4.2281 5.4377 1.6536 47 1 5.7149 4.9252 0.7982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193108944.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:04 Heat of formation + Delta-G solvation = -31.966370 kcal Electronic energy + Delta-G solvation = -23335.822857 eV Core-core repulsion = 20132.602576 eV Total energy + Delta-G solvation = -3203.220281 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.07426 -37.78008 -36.11374 -34.82333 -33.12799 -31.66309 -29.82882 -29.33216 -27.81026 -26.09508 -24.88358 -23.56034 -22.45746 -22.17816 -20.85337 -19.29180 -18.54442 -17.11867 -17.06666 -15.90003 -15.38953 -15.15872 -14.95330 -14.45579 -13.96470 -13.68275 -13.37304 -13.32190 -13.16128 -13.09680 -12.67485 -12.43439 -12.34094 -12.07335 -11.93438 -11.82275 -11.51837 -11.45362 -11.24772 -10.94499 -10.90028 -10.84135 -10.73281 -10.53926 -10.49767 -10.43494 -10.25361 -9.89644 -9.80397 -9.40194 -8.58633 -8.26951 -6.90852 -5.77413 -3.17575 2.87888 3.26817 3.36587 3.44085 3.45961 4.44718 4.49464 4.59142 4.74586 4.91890 4.98631 5.00971 5.11896 5.22053 5.28422 5.32796 5.36476 5.50050 5.51616 5.57415 5.61311 5.62770 5.69415 5.73004 5.79718 5.87548 5.93194 5.96368 6.00807 6.03518 6.12471 6.20324 6.25254 6.29999 6.38849 6.56219 6.63986 6.78239 6.86404 7.39684 7.66863 7.79511 7.87122 8.30371 8.46253 9.17561 9.81069 10.26562 11.27900 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028404 B = 0.003630 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.546241 B = 7712.073093 C = 8081.283718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.108 4.108 4 C -0.104 4.104 5 H 0.087 0.913 6 C -0.109 4.109 7 C -0.154 4.154 8 C 0.530 3.470 9 O -0.546 6.546 10 N -0.615 5.615 11 C 0.105 3.895 12 C -0.154 4.154 13 C 0.174 3.826 14 H 0.077 0.923 15 N -0.587 5.587 16 C 0.161 3.839 17 C -0.257 4.257 18 H 0.074 0.926 19 C 0.000 4.000 20 N -0.906 5.906 21 Si 0.906 3.094 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.086 3.914 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.026 0.974 43 H 0.000 1.000 44 H 0.054 0.946 45 H 0.253 0.747 46 H 0.066 0.934 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.737 -18.019 -5.019 20.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.146 4.146 4 C -0.125 4.125 5 H 0.105 0.895 6 C -0.147 4.147 7 C -0.212 4.212 8 C 0.318 3.682 9 O -0.424 6.424 10 N -0.348 5.348 11 C -0.019 4.019 12 C -0.194 4.194 13 C 0.063 3.937 14 H 0.095 0.905 15 N -0.308 5.308 16 C 0.017 3.983 17 C -0.386 4.386 18 H 0.092 0.908 19 C -0.198 4.198 20 N -0.552 5.552 21 Si 0.736 3.264 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C -0.039 4.039 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.044 0.956 43 H 0.019 0.981 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.084 0.916 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.682 -17.445 -5.551 20.261 hybrid contribution 0.762 0.473 0.547 1.051 sum -7.920 -16.972 -5.004 19.385 Atomic orbital electron populations 1.21775 0.95795 1.01503 1.01977 1.21577 0.95862 0.96340 1.02259 1.21516 0.92595 0.97497 1.02975 1.21393 0.96991 0.93620 1.00506 0.89471 1.21478 0.96088 1.00631 0.96491 1.21799 0.95824 1.02099 1.01439 1.20242 0.77385 0.88791 0.81763 1.90676 1.54370 1.60850 1.36483 1.48603 1.61626 1.18951 1.05661 1.22014 1.00083 0.96117 0.83638 1.23208 1.01065 0.98108 0.97016 1.21410 0.95909 0.87777 0.88617 0.90485 1.43951 1.04294 1.16795 1.65736 1.20864 0.84869 0.91779 1.00817 1.19319 0.86775 0.92889 1.39654 0.90843 1.24897 0.98053 0.95561 1.01274 1.70146 1.34774 1.01493 1.48747 0.86158 0.82442 0.78324 0.79453 1.20331 1.21770 1.21584 1.23102 0.97356 0.83237 1.00160 0.92689 0.92711 0.92789 0.91552 0.91875 0.91606 0.91140 0.91158 0.90715 0.92412 0.92950 0.92613 0.91962 0.92165 0.90562 0.90390 0.95557 0.98138 0.92783 0.93710 0.91581 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.75 16 2 C -0.12 -0.96 5.70 -26.73 -0.15 -1.11 16 3 C -0.11 -1.10 4.66 -26.73 -0.12 -1.22 16 4 C -0.10 -1.20 1.83 -91.78 -0.17 -1.37 16 5 H 0.09 0.89 6.89 -51.93 -0.36 0.53 16 6 C -0.11 -1.19 5.05 -26.73 -0.13 -1.32 16 7 C -0.15 -1.72 9.78 37.16 0.36 -1.36 16 8 C 0.53 8.57 5.83 -10.99 -0.06 8.50 16 9 O -0.55 -10.96 16.34 5.55 0.09 -10.87 16 10 N -0.61 -10.01 3.33 -170.48 -0.57 -10.57 16 11 C 0.11 1.38 6.20 -3.06 -0.02 1.36 16 12 C -0.15 -2.40 6.49 -24.89 -0.16 -2.56 16 13 C 0.17 3.43 3.54 -65.78 -0.23 3.20 16 14 H 0.08 1.53 7.90 -51.93 -0.41 1.12 16 15 N -0.59 -14.28 2.97 -171.03 -0.51 -14.78 16 16 C 0.16 3.88 7.72 59.85 0.46 4.34 16 17 C -0.26 -6.91 9.71 -15.06 -0.15 -7.06 16 18 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 19 C 0.00 0.00 5.07 -17.43 -0.09 -0.08 16 20 N -0.91 -26.14 10.42 55.49 0.58 -25.56 16 21 Si 0.91 21.60 29.58 -169.99 -5.03 16.57 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 C 0.09 1.68 6.47 -2.50 -0.02 1.67 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.49 6.45 -51.93 -0.34 0.15 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.60 6.32 -51.93 -0.33 0.27 16 34 H 0.07 0.94 7.66 -51.93 -0.40 0.54 16 35 H 0.06 0.80 7.21 -51.93 -0.37 0.43 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.70 7.63 -51.93 -0.40 0.30 16 39 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 1.28 6.17 -51.93 -0.32 0.96 16 42 H 0.03 0.69 7.56 -51.93 -0.39 0.30 16 43 H 0.00 0.00 6.17 -51.93 -0.32 -0.32 16 44 H 0.05 1.41 6.83 -51.93 -0.35 1.06 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 46 H 0.07 1.40 7.20 -51.93 -0.37 1.03 16 47 H 0.07 1.51 8.09 -51.93 -0.42 1.09 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -30.67 361.53 -8.65 -39.33 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -8.55 Total: -1.79 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -0.11 Total: 2.23 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.50 Total: -50.92 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.67 -8.65 -39.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193108944.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.362 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds