Wall clock time and date at job start Tue Mar 31 2020 06:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47283 * 2 1 4 4 C 1.53002 * 109.47167 * 185.21115 * 3 2 1 5 5 H 1.08996 * 109.47137 * 55.05296 * 4 3 2 6 6 C 1.53002 * 109.46721 * 295.05517 * 4 3 2 7 7 C 1.53004 * 109.47449 * 301.45087 * 6 4 3 8 8 C 1.50699 * 109.47331 * 175.05705 * 4 3 2 9 9 O 1.21286 * 119.99752 * 27.18133 * 8 4 3 10 10 N 1.34775 * 119.99789 * 207.17983 * 8 4 3 11 11 C 1.47022 * 125.65425 * 4.67696 * 10 8 4 12 12 C 1.54317 * 107.27523 * 181.02249 * 11 10 8 13 13 C 1.55159 * 102.94129 * 22.19072 * 12 11 10 14 14 H 1.09005 * 111.03587 * 82.59067 * 13 12 11 15 15 N 1.46503 * 111.00317 * 206.42203 * 13 12 11 16 16 C 1.46497 * 119.99874 * 52.20065 * 15 13 12 17 17 C 1.36939 * 119.99664 * 232.19460 * 15 13 12 18 18 H 1.07996 * 120.00444 * 341.86458 * 17 15 13 19 19 C 1.38811 * 119.99584 * 161.86558 * 17 15 13 20 20 N 1.31623 * 119.99771 * 327.47955 * 19 17 15 21 21 Si 1.86795 * 120.00215 * 147.48120 * 19 17 15 22 22 H 1.48506 * 109.47227 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.47397 * 299.99645 * 21 19 17 24 24 H 1.48499 * 109.47085 * 60.00006 * 21 19 17 25 25 C 1.47429 * 125.64571 * 184.63571 * 10 8 4 26 26 H 1.08992 * 109.46830 * 300.00443 * 1 2 3 27 27 H 1.09004 * 109.46568 * 60.00402 * 1 2 3 28 28 H 1.09001 * 109.47359 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47046 * 239.99319 * 2 1 3 30 30 H 1.09007 * 109.46882 * 120.00018 * 2 1 3 31 31 H 1.08997 * 109.47135 * 65.20873 * 3 2 1 32 32 H 1.09004 * 109.47027 * 305.20283 * 3 2 1 33 33 H 1.08999 * 109.47559 * 61.45064 * 6 4 3 34 34 H 1.09004 * 109.47464 * 181.45375 * 6 4 3 35 35 H 1.08997 * 109.47186 * 187.06722 * 7 6 4 36 36 H 1.09004 * 109.46769 * 307.06676 * 7 6 4 37 37 H 1.09001 * 109.46847 * 67.06577 * 7 6 4 38 38 H 1.09004 * 109.87641 * 300.44633 * 11 10 8 39 39 H 1.08998 * 109.88125 * 61.60239 * 11 10 8 40 40 H 1.08998 * 110.71809 * 263.82974 * 12 11 10 41 41 H 1.08998 * 110.72372 * 140.55178 * 12 11 10 42 42 H 1.09000 * 109.47318 * 272.70870 * 16 15 13 43 43 H 1.09000 * 109.47208 * 32.71079 * 16 15 13 44 44 H 1.09003 * 109.47084 * 152.70882 * 16 15 13 45 45 H 0.96996 * 120.00392 * 353.21820 * 20 19 17 46 46 H 1.09000 * 110.36719 * 37.06547 * 25 10 8 47 47 H 1.09000 * 110.45748 * 274.79477 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5645 1.4444 -0.1310 5 1 3.8536 0.8820 -1.0188 6 6 4.1836 0.7948 1.1082 7 6 3.7484 1.5628 2.3580 8 6 4.0564 2.8636 -0.2531 9 8 3.4157 3.7714 0.2332 10 7 5.2082 3.1240 -0.9026 11 6 6.0300 2.1375 -1.6190 12 6 7.2586 2.8848 -2.1791 13 6 7.3490 4.1370 -1.2675 14 1 7.8642 3.9058 -0.3350 15 7 8.0031 5.2475 -1.9641 16 6 7.5246 5.6682 -3.2832 17 6 9.0618 5.8922 -1.3820 18 1 9.2342 5.7976 -0.3201 19 6 9.9133 6.6676 -2.1570 20 7 10.1534 6.3326 -3.4070 21 14 10.7186 8.1862 -1.4259 22 1 11.5758 8.8341 -2.4510 23 1 9.6688 9.1390 -0.9839 24 1 11.5519 7.7926 -0.2614 25 6 5.8524 4.4455 -1.0132 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8901 31 1 1.7550 1.9286 0.9329 32 1 1.6026 1.9825 -0.8398 33 1 3.8481 -0.2396 1.1823 34 1 5.2703 0.8194 1.0268 35 1 4.2864 1.1802 3.2253 36 1 3.9721 2.6219 2.2298 37 1 2.6767 1.4335 2.5090 38 1 6.3532 1.3554 -0.9319 39 1 5.4567 1.7014 -2.4370 40 1 7.0936 3.1743 -3.2169 41 1 8.1568 2.2743 -2.0860 42 1 8.0188 5.0775 -4.0545 43 1 6.4469 5.5165 -3.3441 44 1 7.7519 6.7238 -3.4325 45 1 9.8159 5.4936 -3.7578 46 1 5.7326 5.0048 -0.0854 47 1 5.4330 5.0049 -1.8494 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193108945.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:08 Heat of formation + Delta-G solvation = -34.567632 kcal Electronic energy + Delta-G solvation = -23361.327293 eV Core-core repulsion = 20157.994212 eV Total energy + Delta-G solvation = -3203.333080 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.21464 -37.96304 -36.24121 -35.09254 -33.07169 -31.66888 -29.77920 -29.12609 -27.87636 -26.26142 -25.22890 -23.65494 -22.61387 -22.16000 -20.48334 -19.42765 -18.48955 -17.61745 -16.89882 -16.10559 -15.81148 -15.54561 -14.61390 -14.19260 -14.02256 -13.82079 -13.56297 -13.44042 -13.33284 -13.13144 -12.87026 -12.58199 -12.24199 -12.20817 -12.04521 -11.91440 -11.45234 -11.36685 -11.19735 -11.10543 -10.94697 -10.77674 -10.75023 -10.68405 -10.58139 -10.55914 -10.17560 -10.01802 -9.56297 -9.45594 -8.46430 -8.30158 -7.06213 -6.15266 -3.20948 2.80158 3.17631 3.49248 3.54608 3.71552 4.45232 4.54818 4.56610 4.71548 4.91294 4.93698 4.96895 5.02050 5.12337 5.22219 5.23558 5.38026 5.41569 5.45832 5.51946 5.56212 5.61675 5.67121 5.69434 5.74679 5.77167 5.85383 5.90885 5.93092 6.01716 6.10294 6.16138 6.20752 6.25168 6.32732 6.41677 6.52995 6.54868 6.75199 6.85587 7.08399 7.77330 7.90506 8.36556 8.49358 9.02522 9.78789 10.14917 11.13272 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034595 B = 0.003445 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.169849 B = 8125.736918 C = 8325.875031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.104 4.104 4 C -0.104 4.104 5 H 0.087 0.913 6 C -0.111 4.111 7 C -0.158 4.158 8 C 0.531 3.469 9 O -0.545 6.545 10 N -0.614 5.614 11 C 0.104 3.896 12 C -0.154 4.154 13 C 0.175 3.825 14 H 0.079 0.921 15 N -0.588 5.588 16 C 0.132 3.868 17 C -0.366 4.366 18 H 0.062 0.938 19 C -0.017 4.017 20 N -0.906 5.906 21 Si 1.055 2.945 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.293 1.293 25 C 0.086 3.914 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.011 0.989 43 H 0.018 0.982 44 H 0.056 0.944 45 H 0.270 0.730 46 H 0.071 0.929 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.814 -14.517 5.294 20.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.142 4.142 4 C -0.125 4.125 5 H 0.105 0.895 6 C -0.148 4.148 7 C -0.215 4.215 8 C 0.319 3.681 9 O -0.422 6.422 10 N -0.348 5.348 11 C -0.020 4.020 12 C -0.194 4.194 13 C 0.065 3.935 14 H 0.097 0.903 15 N -0.309 5.309 16 C -0.013 4.013 17 C -0.494 4.494 18 H 0.080 0.920 19 C -0.220 4.220 20 N -0.545 5.545 21 Si 0.884 3.116 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.038 4.038 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.029 0.971 43 H 0.036 0.964 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.216 -12.686 5.222 19.049 hybrid contribution -0.847 -1.433 0.209 1.677 sum -14.063 -14.119 5.431 20.654 Atomic orbital electron populations 1.21765 0.95847 1.01387 1.01957 1.21573 0.95874 0.96697 1.02008 1.21507 0.92416 0.96713 1.03577 1.21369 0.97385 0.93432 1.00340 0.89506 1.21436 1.00453 0.99452 0.93489 1.21881 1.01389 1.01440 0.96822 1.20256 0.79415 0.91012 0.77385 1.90674 1.55724 1.47483 1.48365 1.48532 1.22715 1.11016 1.52514 1.22034 0.92573 0.91907 0.95448 1.23222 0.95939 0.98967 1.01283 1.21399 0.90125 0.86829 0.95161 0.90281 1.43877 1.34688 1.34128 1.18172 1.20988 0.94289 0.99612 0.86460 1.19960 1.06716 1.29479 0.93210 0.91973 1.25683 0.96348 1.03683 0.96249 1.70798 1.41094 1.25226 1.17346 0.83688 0.75943 0.76853 0.75087 1.21150 1.22022 1.21966 1.22928 0.95215 0.83858 1.01810 0.92702 0.92757 0.92872 0.92107 0.91738 0.90404 0.91848 0.90795 0.91622 0.92866 0.91768 0.92323 0.91799 0.92114 0.90751 0.90501 0.97062 0.96364 0.92491 0.91920 0.91040 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -1.00 5.56 -26.73 -0.15 -1.15 16 3 C -0.10 -1.11 3.91 -26.73 -0.10 -1.21 16 4 C -0.10 -1.17 2.09 -91.77 -0.19 -1.36 16 5 H 0.09 0.86 7.23 -51.93 -0.38 0.48 16 6 C -0.11 -1.10 5.42 -26.73 -0.14 -1.24 16 7 C -0.16 -1.73 9.17 37.16 0.34 -1.39 16 8 C 0.53 8.28 6.06 -10.99 -0.07 8.21 16 9 O -0.54 -10.39 15.57 5.55 0.09 -10.30 16 10 N -0.61 -9.73 3.33 -170.52 -0.57 -10.30 16 11 C 0.10 1.38 6.07 -3.07 -0.02 1.36 16 12 C -0.15 -2.50 6.50 -24.90 -0.16 -2.66 16 13 C 0.18 3.47 3.54 -65.78 -0.23 3.24 16 14 H 0.08 1.62 7.93 -51.93 -0.41 1.21 16 15 N -0.59 -14.19 2.89 -171.03 -0.49 -14.69 16 16 C 0.13 3.05 7.65 59.85 0.46 3.51 16 17 C -0.37 -9.96 9.45 -15.06 -0.14 -10.11 16 18 H 0.06 1.71 7.97 -52.49 -0.42 1.29 16 19 C -0.02 -0.46 4.54 -17.43 -0.08 -0.54 16 20 N -0.91 -26.51 12.55 55.49 0.70 -25.81 16 21 Si 1.05 24.95 30.02 -169.99 -5.10 19.85 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 C 0.09 1.62 6.47 -2.53 -0.02 1.60 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.48 6.86 -51.92 -0.36 0.12 16 31 H 0.08 0.91 6.18 -51.93 -0.32 0.59 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.59 6.75 -51.93 -0.35 0.24 16 34 H 0.07 0.67 7.77 -51.93 -0.40 0.27 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.89 6.39 -51.93 -0.33 0.56 16 37 H 0.06 0.59 6.70 -51.93 -0.35 0.25 16 38 H 0.06 0.73 7.77 -51.93 -0.40 0.32 16 39 H 0.06 0.70 7.98 -51.93 -0.41 0.29 16 40 H 0.07 1.27 6.95 -51.93 -0.36 0.91 16 41 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.01 0.27 6.82 -51.93 -0.35 -0.09 16 43 H 0.02 0.37 6.38 -51.93 -0.33 0.04 16 44 H 0.06 1.45 7.01 -51.93 -0.36 1.09 16 45 H 0.27 7.90 6.48 -40.82 -0.26 7.63 16 46 H 0.07 1.44 8.08 -51.93 -0.42 1.02 16 47 H 0.06 1.29 6.34 -51.93 -0.33 0.96 16 LS Contribution 356.62 15.07 5.37 5.37 Total: -1.00 -30.71 356.62 -8.46 -39.18 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -8.31 Total: -0.79 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -0.14 Total: -2.52 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.36 Total: -50.79 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.10 Total: 19.85 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.71 -8.46 -39.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193108945.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.608 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds