Wall clock time and date at job start Tue Mar 31 2020 06:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47283 * 2 1 4 4 C 1.53002 * 109.47167 * 185.21115 * 3 2 1 5 5 H 1.08996 * 109.47137 * 55.05296 * 4 3 2 6 6 C 1.53002 * 109.46721 * 295.05517 * 4 3 2 7 7 C 1.53004 * 109.47449 * 301.45087 * 6 4 3 8 8 C 1.50699 * 109.47331 * 175.05705 * 4 3 2 9 9 O 1.21286 * 119.99752 * 27.18133 * 8 4 3 10 10 N 1.34775 * 119.99789 * 207.17983 * 8 4 3 11 11 C 1.47022 * 125.65425 * 4.67696 * 10 8 4 12 12 C 1.54317 * 107.27523 * 181.02249 * 11 10 8 13 13 C 1.55159 * 102.94129 * 22.19072 * 12 11 10 14 14 H 1.09005 * 111.03587 * 82.59067 * 13 12 11 15 15 N 1.46503 * 111.00317 * 206.42203 * 13 12 11 16 16 C 1.46497 * 119.99874 * 52.20065 * 15 13 12 17 17 C 1.36939 * 119.99664 * 232.19460 * 15 13 12 18 18 H 1.07996 * 120.00444 * 341.86458 * 17 15 13 19 19 C 1.38811 * 119.99584 * 161.86558 * 17 15 13 20 20 N 1.31623 * 119.99771 * 327.47955 * 19 17 15 21 21 Si 1.86795 * 120.00215 * 147.48120 * 19 17 15 22 22 H 1.48506 * 109.47227 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.47397 * 299.99645 * 21 19 17 24 24 H 1.48499 * 109.47085 * 60.00006 * 21 19 17 25 25 C 1.47429 * 125.64571 * 184.63571 * 10 8 4 26 26 H 1.08992 * 109.46830 * 300.00443 * 1 2 3 27 27 H 1.09004 * 109.46568 * 60.00402 * 1 2 3 28 28 H 1.09001 * 109.47359 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47046 * 239.99319 * 2 1 3 30 30 H 1.09007 * 109.46882 * 120.00018 * 2 1 3 31 31 H 1.08997 * 109.47135 * 65.20873 * 3 2 1 32 32 H 1.09004 * 109.47027 * 305.20283 * 3 2 1 33 33 H 1.08999 * 109.47559 * 61.45064 * 6 4 3 34 34 H 1.09004 * 109.47464 * 181.45375 * 6 4 3 35 35 H 1.08997 * 109.47186 * 187.06722 * 7 6 4 36 36 H 1.09004 * 109.46769 * 307.06676 * 7 6 4 37 37 H 1.09001 * 109.46847 * 67.06577 * 7 6 4 38 38 H 1.09004 * 109.87641 * 300.44633 * 11 10 8 39 39 H 1.08998 * 109.88125 * 61.60239 * 11 10 8 40 40 H 1.08998 * 110.71809 * 263.82974 * 12 11 10 41 41 H 1.08998 * 110.72372 * 140.55178 * 12 11 10 42 42 H 1.09000 * 109.47318 * 272.70870 * 16 15 13 43 43 H 1.09000 * 109.47208 * 32.71079 * 16 15 13 44 44 H 1.09003 * 109.47084 * 152.70882 * 16 15 13 45 45 H 0.96996 * 120.00392 * 353.21820 * 20 19 17 46 46 H 1.09000 * 110.36719 * 37.06547 * 25 10 8 47 47 H 1.09000 * 110.45748 * 274.79477 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5645 1.4444 -0.1310 5 1 3.8536 0.8820 -1.0188 6 6 4.1836 0.7948 1.1082 7 6 3.7484 1.5628 2.3580 8 6 4.0564 2.8636 -0.2531 9 8 3.4157 3.7714 0.2332 10 7 5.2082 3.1240 -0.9026 11 6 6.0300 2.1375 -1.6190 12 6 7.2586 2.8848 -2.1791 13 6 7.3490 4.1370 -1.2675 14 1 7.8642 3.9058 -0.3350 15 7 8.0031 5.2475 -1.9641 16 6 7.5246 5.6682 -3.2832 17 6 9.0618 5.8922 -1.3820 18 1 9.2342 5.7976 -0.3201 19 6 9.9133 6.6676 -2.1570 20 7 10.1534 6.3326 -3.4070 21 14 10.7186 8.1862 -1.4259 22 1 11.5758 8.8341 -2.4510 23 1 9.6688 9.1390 -0.9839 24 1 11.5519 7.7926 -0.2614 25 6 5.8524 4.4455 -1.0132 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8901 31 1 1.7550 1.9286 0.9329 32 1 1.6026 1.9825 -0.8398 33 1 3.8481 -0.2396 1.1823 34 1 5.2703 0.8194 1.0268 35 1 4.2864 1.1802 3.2253 36 1 3.9721 2.6219 2.2298 37 1 2.6767 1.4335 2.5090 38 1 6.3532 1.3554 -0.9319 39 1 5.4567 1.7014 -2.4370 40 1 7.0936 3.1743 -3.2169 41 1 8.1568 2.2743 -2.0860 42 1 8.0188 5.0775 -4.0545 43 1 6.4469 5.5165 -3.3441 44 1 7.7519 6.7238 -3.4325 45 1 9.8159 5.4936 -3.7578 46 1 5.7326 5.0048 -0.0854 47 1 5.4330 5.0049 -1.8494 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193108945.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:07 Heat of formation + Delta-G solvation = -51.844675 kcal Electronic energy + Delta-G solvation = -23362.076481 eV Core-core repulsion = 20157.994212 eV Total energy + Delta-G solvation = -3204.082269 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.44536 -39.35925 -37.29560 -36.81535 -33.89177 -33.37410 -31.30406 -30.14608 -29.20285 -28.20677 -26.25969 -24.95593 -23.98429 -23.29152 -21.45033 -21.03642 -19.65676 -19.53429 -18.10211 -17.49001 -16.75093 -16.70783 -15.93953 -15.88393 -15.46705 -15.07658 -14.91215 -14.80585 -14.52430 -14.29669 -14.03798 -13.78418 -13.55304 -13.45138 -13.03031 -12.98506 -12.74330 -12.72426 -12.57520 -12.46211 -12.32183 -12.14361 -11.92109 -11.89972 -11.85028 -11.75101 -11.54927 -11.45928 -11.31198 -10.68783 -10.44797 -9.71097 -9.05184 -8.31789 -5.34241 1.57727 1.59792 1.64683 1.83993 1.92789 2.64118 3.11679 3.36715 3.47344 3.74677 3.80168 3.87184 3.95254 4.06995 4.19934 4.23218 4.27994 4.32475 4.35730 4.41666 4.54142 4.62135 4.65264 4.70317 4.73503 4.79169 4.86797 4.90610 4.91712 4.97864 5.06794 5.07254 5.14440 5.15753 5.17972 5.19269 5.27107 5.31180 5.39612 5.42277 5.55580 5.78425 6.35176 6.54517 6.98032 7.13366 7.73999 8.11041 8.95662 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034595 B = 0.003445 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.169849 B = 8125.736918 C = 8325.875031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.102 4.102 4 C -0.095 4.095 5 H 0.113 0.887 6 C -0.107 4.107 7 C -0.158 4.158 8 C 0.525 3.475 9 O -0.588 6.588 10 N -0.616 5.616 11 C 0.110 3.890 12 C -0.143 4.143 13 C 0.168 3.832 14 H 0.069 0.931 15 N -0.605 5.605 16 C 0.147 3.853 17 C -0.370 4.370 18 H 0.054 0.946 19 C -0.065 4.065 20 N -0.931 5.931 21 Si 1.103 2.897 22 H -0.291 1.291 23 H -0.286 1.286 24 H -0.275 1.275 25 C 0.099 3.901 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.026 0.974 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.005 0.995 43 H 0.042 0.958 44 H 0.026 0.974 45 H 0.259 0.741 46 H 0.047 0.953 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.508 -17.282 5.688 23.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.140 4.140 4 C -0.116 4.116 5 H 0.131 0.869 6 C -0.144 4.144 7 C -0.215 4.215 8 C 0.316 3.684 9 O -0.468 6.468 10 N -0.349 5.349 11 C -0.013 4.013 12 C -0.183 4.183 13 C 0.060 3.940 14 H 0.087 0.913 15 N -0.327 5.327 16 C 0.001 3.999 17 C -0.499 4.499 18 H 0.072 0.928 19 C -0.263 4.263 20 N -0.572 5.572 21 Si 0.928 3.072 22 H -0.217 1.217 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.027 4.027 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.125 0.875 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.045 0.955 37 H 0.082 0.918 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.023 0.977 43 H 0.060 0.940 44 H 0.045 0.955 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.930 -15.505 5.630 21.591 hybrid contribution -0.708 -0.577 0.145 0.925 sum -14.639 -16.082 5.775 22.501 Atomic orbital electron populations 1.21782 0.95708 1.02157 1.01512 1.21543 0.95989 0.94670 1.03244 1.21483 0.92015 0.98413 1.02054 1.21450 0.97627 0.90288 1.02237 0.86862 1.21491 1.00495 1.00665 0.91795 1.21864 1.02054 0.99296 0.98264 1.21195 0.78584 0.92608 0.76055 1.90655 1.56941 1.49293 1.49926 1.48628 1.23148 1.10171 1.52976 1.22183 0.91085 0.91238 0.96748 1.23065 0.98042 0.97241 0.99934 1.21494 0.89929 0.87385 0.95241 0.91310 1.44011 1.34323 1.35814 1.18544 1.20778 0.95477 0.97514 0.86089 1.20151 1.07066 1.29754 0.92970 0.92802 1.26871 0.97291 1.05847 0.96265 1.70902 1.42832 1.25157 1.18310 0.83025 0.75459 0.73935 0.74794 1.21673 1.21313 1.20122 1.22513 0.94721 0.85470 0.99986 0.93211 0.93276 0.91454 0.90740 0.90476 0.92144 0.93369 0.87523 0.91437 0.91585 0.95521 0.91782 0.88747 0.89074 0.91482 0.89650 0.97681 0.93970 0.95515 0.93110 0.93452 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 71.98 0.71 -1.23 16 2 C -0.12 -1.48 5.56 30.59 0.17 -1.31 16 3 C -0.10 -1.96 3.91 30.59 0.12 -1.84 16 4 C -0.09 -1.87 2.09 -11.54 -0.02 -1.89 16 5 H 0.11 1.67 7.23 -2.39 -0.02 1.66 16 6 C -0.11 -1.75 5.42 30.60 0.17 -1.59 16 7 C -0.16 -3.21 9.17 71.98 0.66 -2.55 16 8 C 0.52 15.82 6.06 87.66 0.53 16.35 16 9 O -0.59 -22.86 15.57 -3.05 -0.05 -22.91 16 10 N -0.62 -18.65 3.33 -811.80 -2.70 -21.35 16 11 C 0.11 2.53 6.07 86.73 0.53 3.06 16 12 C -0.14 -4.38 6.50 31.78 0.21 -4.17 16 13 C 0.17 6.67 3.54 46.38 0.16 6.83 16 14 H 0.07 2.84 7.93 -2.38 -0.02 2.82 16 15 N -0.60 -29.70 2.89 -695.02 -2.01 -31.70 16 16 C 0.15 6.92 7.65 127.77 0.98 7.90 16 17 C -0.37 -20.55 9.45 84.03 0.79 -19.75 16 18 H 0.05 3.01 7.97 -2.91 -0.02 2.99 16 19 C -0.06 -3.64 4.54 84.86 0.39 -3.26 16 20 N -0.93 -55.52 12.55 21.65 0.27 -55.25 16 21 Si 1.10 50.95 30.02 68.60 2.06 53.01 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 25 C 0.10 3.73 6.47 86.85 0.56 4.30 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.81 6.86 -2.38 -0.02 0.79 16 31 H 0.06 1.37 6.18 -2.39 -0.01 1.36 16 32 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.11 1.13 6.75 -2.39 -0.02 1.12 16 34 H 0.07 1.11 7.77 -2.38 -0.02 1.10 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.03 0.73 6.39 -2.39 -0.02 0.72 16 37 H 0.06 1.21 6.70 -2.39 -0.02 1.19 16 38 H 0.09 1.69 7.77 -2.39 -0.02 1.67 16 39 H 0.09 1.66 7.98 -2.39 -0.02 1.64 16 40 H 0.07 2.17 6.95 -2.39 -0.02 2.16 16 41 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.01 0.25 6.82 -2.39 -0.02 0.23 16 43 H 0.04 1.74 6.38 -2.39 -0.02 1.73 16 44 H 0.03 1.39 7.01 -2.39 -0.02 1.37 16 45 H 0.26 15.53 6.48 -92.71 -0.60 14.93 16 46 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 47 H 0.05 2.09 6.34 -2.39 -0.02 2.07 16 Total: -1.00 -69.27 356.62 4.62 -64.65 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 1.09 Total: 12.72 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 5.95 Total: 0.84 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -4.44 Total: -108.30 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.05 Total: -22.91 kcal Atomic # 14 Polarization: 50.95 SS G_CDS: 2.06 Total: 53.01 kcal Total: -69.27 4.62 -64.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193108945.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.805 kcal (2) G-P(sol) polarization free energy of solvation -69.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds