Wall clock time and date at job start Tue Mar 31 2020 06:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47362 * 2 1 4 4 C 1.53000 * 109.47245 * 178.87379 * 3 2 1 5 5 H 1.09002 * 109.46781 * 55.53100 * 4 3 2 6 6 C 1.52999 * 109.47359 * 295.53244 * 4 3 2 7 7 C 1.53005 * 109.46721 * 299.90528 * 6 4 3 8 8 C 1.50698 * 109.47217 * 175.52997 * 4 3 2 9 9 O 1.21280 * 119.99915 * 15.55409 * 8 4 3 10 10 N 1.34777 * 119.99763 * 195.55812 * 8 4 3 11 11 C 1.47421 * 125.65279 * 3.97619 * 10 8 4 12 12 C 1.54909 * 104.83752 * 204.09565 * 11 10 8 13 13 C 1.55161 * 101.57897 * 322.99295 * 12 11 10 14 14 H 1.09002 * 110.72153 * 276.95587 * 13 12 11 15 15 N 1.46506 * 110.71796 * 153.86376 * 13 12 11 16 16 C 1.46499 * 119.99849 * 301.45400 * 15 13 12 17 17 C 1.36935 * 120.00026 * 121.45747 * 15 13 12 18 18 H 1.08002 * 120.00246 * 21.16309 * 17 15 13 19 19 C 1.38815 * 119.99894 * 201.17648 * 17 15 13 20 20 N 1.31620 * 119.99981 * 11.66114 * 19 17 15 21 21 Si 1.86794 * 119.99673 * 191.66769 * 19 17 15 22 22 H 1.48505 * 109.47402 * 89.99632 * 21 19 17 23 23 H 1.48508 * 109.46986 * 209.99509 * 21 19 17 24 24 H 1.48503 * 109.47348 * 329.99172 * 21 19 17 25 25 C 1.47027 * 125.64466 * 183.67666 * 10 8 4 26 26 H 1.09001 * 109.46827 * 59.99568 * 1 2 3 27 27 H 1.08990 * 109.47250 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46969 * 300.00742 * 1 2 3 29 29 H 1.08998 * 109.47225 * 120.00090 * 2 1 3 30 30 H 1.08995 * 109.47203 * 239.99743 * 2 1 3 31 31 H 1.08996 * 109.47200 * 298.87180 * 3 2 1 32 32 H 1.08997 * 109.47177 * 58.87709 * 3 2 1 33 33 H 1.09007 * 109.47151 * 59.89855 * 6 4 3 34 34 H 1.08996 * 109.47462 * 179.90344 * 6 4 3 35 35 H 1.09000 * 109.46555 * 185.24303 * 7 6 4 36 36 H 1.08995 * 109.47120 * 305.23909 * 7 6 4 37 37 H 1.08997 * 109.47301 * 65.24256 * 7 6 4 38 38 H 1.08999 * 110.36697 * 322.93899 * 11 10 8 39 39 H 1.09000 * 110.36348 * 85.25730 * 11 10 8 40 40 H 1.08998 * 111.00549 * 81.06399 * 12 11 10 41 41 H 1.08999 * 111.00856 * 204.88030 * 12 11 10 42 42 H 1.08994 * 109.47477 * 95.34286 * 16 15 13 43 43 H 1.09007 * 109.46972 * 215.34561 * 16 15 13 44 44 H 1.09001 * 109.47155 * 335.33833 * 16 15 13 45 45 H 0.96999 * 120.00077 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.88396 * 298.38884 * 25 10 8 47 47 H 1.09001 * 109.88374 * 59.55607 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5698 1.4425 0.0284 5 1 3.9487 0.8554 -0.8082 6 6 4.0556 0.8294 1.3432 7 6 3.5256 1.6549 2.5174 8 6 4.0742 2.8583 -0.0823 9 8 3.3187 3.7878 0.1076 10 7 5.3649 3.0914 -0.3924 11 6 6.3671 2.0637 -0.7282 12 6 7.7316 2.7153 -0.3915 13 6 7.4882 4.1866 -0.8197 14 1 7.6456 4.3075 -1.8915 15 7 8.3540 5.0961 -0.0649 16 6 8.2824 5.1301 1.3979 17 6 9.2302 5.9142 -0.7268 18 1 9.0658 6.1525 -1.7672 19 6 10.3300 6.4372 -0.0604 20 7 10.6619 5.9741 1.1261 21 14 11.3386 7.7981 -0.8476 22 1 10.7838 9.1176 -0.4520 23 1 12.7482 7.6969 -0.3912 24 1 11.2859 7.6619 -2.3254 25 6 6.0051 4.4134 -0.4578 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.6934 1.9504 -0.8999 32 1 1.6604 1.9621 0.8797 33 1 3.6892 -0.1941 1.4241 34 1 5.1454 0.8278 1.3627 35 1 3.9466 1.2746 3.4481 36 1 3.8141 2.6980 2.3876 37 1 2.4388 1.5802 2.5528 38 1 6.2130 1.1711 -0.1219 39 1 6.3162 1.8164 -1.7886 40 1 7.9435 2.6489 0.6756 41 1 8.5343 2.2654 -0.9758 42 1 9.0507 4.4790 1.8147 43 1 8.4430 6.1506 1.7459 44 1 7.3000 4.7864 1.7217 45 1 11.4302 6.3398 1.5919 46 1 5.5234 5.0211 -1.2238 47 1 5.9332 4.9084 0.5106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193108947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:13 Heat of formation + Delta-G solvation = -30.334652 kcal Electronic energy + Delta-G solvation = -23466.676177 eV Core-core repulsion = 20263.526653 eV Total energy + Delta-G solvation = -3203.149524 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.16011 -37.81497 -36.19520 -34.79523 -33.04506 -31.54083 -29.75910 -29.04218 -27.86413 -26.07045 -25.19237 -23.70095 -22.67282 -22.17873 -20.43939 -19.17837 -18.49664 -17.05537 -16.76548 -16.06563 -15.92725 -15.10363 -14.85572 -14.41343 -14.09087 -13.66919 -13.57731 -13.25309 -13.11971 -12.88123 -12.55968 -12.42290 -12.29928 -12.10509 -11.94537 -11.66183 -11.38117 -11.35989 -11.11969 -11.01511 -10.93249 -10.80137 -10.67603 -10.56861 -10.48702 -10.44093 -10.22713 -9.87952 -9.86655 -9.41079 -8.58670 -8.26919 -6.84210 -5.76174 -3.22509 2.88511 3.26283 3.36997 3.43642 3.44330 4.45562 4.51577 4.60409 4.75912 4.97138 5.01688 5.05402 5.07475 5.16857 5.32090 5.35365 5.45242 5.50585 5.53505 5.58889 5.60951 5.66202 5.71361 5.77257 5.82312 5.89686 5.92160 5.97165 6.02021 6.09217 6.15538 6.20656 6.32373 6.37813 6.41167 6.58677 6.67802 6.81170 6.87997 7.38037 7.69767 7.78315 7.85931 8.33635 8.45038 9.18811 9.81113 10.29087 11.28509 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039484 B = 0.003449 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.975856 B = 8116.375899 C = 8224.638356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.102 4.102 4 C -0.104 4.104 5 H 0.089 0.911 6 C -0.115 4.115 7 C -0.156 4.156 8 C 0.530 3.470 9 O -0.547 6.547 10 N -0.612 5.612 11 C 0.097 3.903 12 C -0.151 4.151 13 C 0.173 3.827 14 H 0.077 0.923 15 N -0.588 5.588 16 C 0.162 3.838 17 C -0.258 4.258 18 H 0.071 0.929 19 C 0.003 3.997 20 N -0.907 5.907 21 Si 0.908 3.092 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.086 3.914 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.031 0.969 43 H 0.045 0.955 44 H 0.000 1.000 45 H 0.253 0.747 46 H 0.059 0.941 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.938 -14.010 -1.376 19.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.140 4.140 4 C -0.125 4.125 5 H 0.107 0.893 6 C -0.152 4.152 7 C -0.213 4.213 8 C 0.319 3.681 9 O -0.425 6.425 10 N -0.346 5.346 11 C -0.027 4.027 12 C -0.191 4.191 13 C 0.063 3.937 14 H 0.095 0.905 15 N -0.308 5.308 16 C 0.018 3.982 17 C -0.388 4.388 18 H 0.088 0.912 19 C -0.196 4.196 20 N -0.552 5.552 21 Si 0.738 3.262 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.205 1.205 25 C -0.038 4.038 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.018 0.982 45 H 0.063 0.937 46 H 0.077 0.923 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.238 -13.427 -1.129 19.603 hybrid contribution 0.765 0.700 -0.376 1.103 sum -13.473 -12.727 -1.505 18.595 Atomic orbital electron populations 1.21758 0.95891 1.01325 1.01947 1.21592 0.95862 0.96815 1.02004 1.21474 0.92507 0.96526 1.03517 1.21353 0.97563 0.93695 0.99930 0.89328 1.21536 1.01096 0.99499 0.93102 1.21845 1.01246 1.00738 0.97479 1.20235 0.80421 0.91207 0.76281 1.90673 1.55060 1.45926 1.50880 1.48528 1.08895 1.09284 1.67858 1.22427 0.89019 0.91449 0.99759 1.23376 0.94366 0.98662 1.02713 1.21288 0.87702 0.88549 0.96204 0.90450 1.43881 1.42074 1.42676 1.02184 1.20805 0.94226 1.00689 0.82524 1.19251 1.01973 1.21571 0.95969 0.91152 1.25003 0.96961 1.00288 0.97299 1.70081 1.27863 1.42731 1.14525 0.86207 0.79301 0.82050 0.78662 1.21461 1.21736 1.20474 1.22729 0.95255 0.83663 1.02141 0.92777 0.92924 0.92716 0.91689 0.92148 0.91693 0.90611 0.90781 0.91281 0.92688 0.92257 0.92306 0.91156 0.91772 0.90644 0.90439 0.95028 0.93662 0.98179 0.93697 0.92273 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.13 -1.03 5.71 -26.73 -0.15 -1.18 16 3 C -0.10 -1.11 3.80 -26.73 -0.10 -1.21 16 4 C -0.10 -1.19 1.77 -91.77 -0.16 -1.36 16 5 H 0.09 0.88 7.77 -51.93 -0.40 0.48 16 6 C -0.11 -1.18 5.31 -26.73 -0.14 -1.32 16 7 C -0.16 -1.79 9.26 37.16 0.34 -1.44 16 8 C 0.53 8.40 5.78 -10.99 -0.06 8.34 16 9 O -0.55 -10.66 16.19 5.56 0.09 -10.57 16 10 N -0.61 -9.79 3.33 -170.51 -0.57 -10.36 16 11 C 0.10 1.29 6.44 -2.53 -0.02 1.27 16 12 C -0.15 -2.49 6.65 -24.58 -0.16 -2.65 16 13 C 0.17 3.40 3.43 -66.08 -0.23 3.18 16 14 H 0.08 1.50 7.92 -51.93 -0.41 1.09 16 15 N -0.59 -14.33 2.94 -171.37 -0.50 -14.83 16 16 C 0.16 3.95 7.66 59.85 0.46 4.41 16 17 C -0.26 -6.93 9.64 -15.06 -0.15 -7.08 16 18 H 0.07 1.84 7.82 -52.49 -0.41 1.43 16 19 C 0.00 0.08 5.13 -17.43 -0.09 -0.01 16 20 N -0.91 -25.98 10.53 55.49 0.58 -25.40 16 21 Si 0.91 21.62 29.57 -169.99 -5.03 16.59 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.09 1.62 6.40 -3.05 -0.02 1.60 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.50 6.49 -51.93 -0.34 0.16 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.91 6.25 -51.93 -0.32 0.59 16 33 H 0.07 0.61 6.52 -51.93 -0.34 0.27 16 34 H 0.07 0.73 6.28 -51.93 -0.33 0.41 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.86 6.87 -51.93 -0.36 0.50 16 37 H 0.06 0.63 6.62 -51.93 -0.34 0.28 16 38 H 0.07 0.78 5.76 -51.93 -0.30 0.49 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.36 7.28 -51.93 -0.38 0.99 16 41 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.03 0.82 7.38 -51.93 -0.38 0.44 16 43 H 0.04 1.20 7.19 -51.93 -0.37 0.83 16 44 H 0.00 0.00 6.29 -51.93 -0.33 -0.33 16 45 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.07 1.50 6.13 -51.93 -0.32 1.18 16 LS Contribution 354.95 15.07 5.35 5.35 Total: -1.00 -30.39 354.95 -8.46 -38.84 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -8.27 Total: -1.38 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -0.11 Total: 1.75 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.49 Total: -50.59 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.39 -8.46 -38.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193108947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.508 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds