Wall clock time and date at job start Tue Mar 31 2020 06:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46917 * 2 1 4 4 C 1.52996 * 109.46612 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47601 * 305.00174 * 4 3 2 6 6 C 1.53006 * 109.47431 * 65.00444 * 4 3 2 7 7 C 1.53002 * 109.47158 * 185.00028 * 4 3 2 8 8 C 1.50697 * 109.47353 * 175.00078 * 7 4 3 9 9 O 1.21280 * 120.00156 * 353.91892 * 8 7 4 10 10 N 1.34780 * 120.00042 * 173.91822 * 8 7 4 11 11 C 1.48204 * 119.97059 * 174.59744 * 10 8 7 12 12 C 1.47141 * 110.34531 * 102.46432 * 11 10 8 13 13 C 1.53243 * 111.81065 * 58.22595 * 12 11 10 14 14 N 1.43461 * 108.26073 * 281.67660 * 13 12 11 15 15 C 1.36933 * 118.93914 * 273.77826 * 14 13 12 16 16 H 1.07997 * 120.00186 * 33.97334 * 15 14 13 17 17 C 1.38820 * 119.99901 * 213.96808 * 15 14 13 18 18 N 1.31618 * 119.99787 * 194.06321 * 17 15 14 19 19 Si 1.86796 * 119.99797 * 14.06161 * 17 15 14 20 20 H 1.48499 * 109.47249 * 275.20816 * 19 17 15 21 21 H 1.48505 * 109.46772 * 155.21140 * 19 17 15 22 22 H 1.48499 * 109.47283 * 35.21466 * 19 17 15 23 23 C 1.48861 * 122.11669 * 93.50815 * 14 13 12 24 24 C 1.43621 * 119.96942 * 354.57416 * 10 8 7 25 25 H 1.08995 * 109.47258 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47216 * 299.99845 * 1 2 3 27 27 H 1.09001 * 109.47293 * 59.99738 * 1 2 3 28 28 H 1.08998 * 109.46752 * 240.00411 * 2 1 3 29 29 H 1.08993 * 109.47001 * 120.00321 * 2 1 3 30 30 H 1.08998 * 109.47074 * 60.00608 * 3 2 1 31 31 H 1.08995 * 109.47293 * 299.99515 * 3 2 1 32 32 H 1.09006 * 109.46949 * 59.99330 * 6 4 3 33 33 H 1.08997 * 109.47464 * 179.97438 * 6 4 3 34 34 H 1.08999 * 109.46561 * 300.00132 * 6 4 3 35 35 H 1.09007 * 109.46693 * 55.00025 * 7 4 3 36 36 H 1.08998 * 109.47099 * 295.00217 * 7 4 3 37 37 H 1.09004 * 109.32216 * 222.73016 * 11 10 8 38 38 H 1.08992 * 109.32832 * 342.36997 * 11 10 8 39 39 H 1.09006 * 109.00471 * 178.89932 * 12 11 10 40 40 H 1.08993 * 109.00556 * 297.76097 * 12 11 10 41 41 H 1.08999 * 109.48855 * 162.04055 * 13 12 11 42 42 H 1.08995 * 109.73994 * 41.46258 * 13 12 11 43 43 H 0.96996 * 119.99873 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.47915 * 80.88150 * 23 14 13 45 45 H 1.09007 * 109.47491 * 200.89633 * 23 14 13 46 46 H 1.09000 * 108.87243 * 149.90870 * 24 10 8 47 47 H 1.08996 * 108.87603 * 31.47233 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0806 0.8327 -1.3065 7 6 4.0800 2.8795 0.1264 8 6 5.5818 2.8705 0.2505 9 8 6.1757 1.8178 0.3505 10 7 6.2650 4.0323 0.2503 11 6 7.7272 4.0314 0.4923 12 6 8.4555 4.1986 -0.7753 13 6 8.0633 5.4960 -1.4904 14 7 6.8012 5.2874 -2.1399 15 6 6.7847 4.7458 -3.3974 16 1 7.5255 4.0123 -3.6793 17 6 5.8156 5.1397 -4.3100 18 7 5.6199 4.4378 -5.4061 19 14 4.7893 6.6657 -3.9823 20 1 3.6347 6.3097 -3.1190 21 1 4.2937 7.2147 -5.2701 22 1 5.6236 7.6857 -3.2977 23 6 5.5088 5.6353 -1.4883 24 6 5.5755 5.2700 0.0152 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.7175 1.4221 -2.1485 33 1 5.1705 0.8331 -1.3062 34 1 3.7172 -0.1910 -1.3961 35 1 3.6449 3.3432 1.0118 36 1 3.7920 3.4460 -0.7592 37 1 7.9819 4.8501 1.1654 38 1 8.0166 3.0853 0.9494 39 1 9.5260 4.2145 -0.5701 40 1 8.2318 3.3544 -1.4273 41 1 8.8223 5.7464 -2.2316 42 1 7.9752 6.3043 -0.7646 43 1 4.9431 4.7132 -6.0440 44 1 5.3242 6.7043 -1.5949 45 1 4.7010 5.0778 -1.9625 46 1 6.0913 6.0680 0.5495 47 1 4.5603 5.1874 0.4034 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195210952.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:35 Heat of formation + Delta-G solvation = -30.748663 kcal Electronic energy + Delta-G solvation = -24264.320809 eV Core-core repulsion = 21061.153331 eV Total energy + Delta-G solvation = -3203.167477 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.97817 -37.56373 -36.34985 -34.31387 -33.14083 -32.28617 -31.40117 -28.23248 -27.40574 -26.43140 -25.74615 -23.41519 -22.74655 -21.46810 -20.01654 -19.72453 -18.41854 -17.12799 -16.33457 -16.03230 -15.45532 -15.30426 -14.83020 -14.52752 -14.07075 -13.69201 -13.63355 -13.40914 -13.18804 -12.91378 -12.73407 -12.49847 -12.17329 -12.09872 -11.76306 -11.56995 -11.54797 -11.39524 -11.30386 -10.98808 -10.81481 -10.50792 -10.42238 -10.37493 -10.33792 -10.26371 -10.11489 -9.94966 -9.57088 -9.20181 -8.62175 -8.13406 -6.83544 -5.95135 -3.40695 3.08175 3.25687 3.42452 3.45136 3.48666 4.49512 4.74453 4.87700 4.93685 4.98463 5.14549 5.24690 5.30271 5.35952 5.40131 5.49739 5.57531 5.58851 5.71395 5.77638 5.81487 5.83651 5.86836 5.87616 5.91642 6.03542 6.05500 6.07110 6.11345 6.28283 6.31063 6.32441 6.34309 6.43377 6.48192 6.52811 6.67135 6.73731 6.85409 6.95149 7.15772 7.88878 8.05999 8.40570 8.66657 8.99175 9.72091 10.07480 11.21092 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014329 B = 0.006394 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.634279 B = 4378.117808 C = 5456.644134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.116 4.116 4 C -0.072 4.072 5 H 0.074 0.926 6 C -0.151 4.151 7 C -0.138 4.138 8 C 0.523 3.477 9 O -0.547 6.547 10 N -0.591 5.591 11 C 0.130 3.870 12 C -0.169 4.169 13 C 0.164 3.836 14 N -0.600 5.600 15 C -0.263 4.263 16 H 0.080 0.920 17 C 0.029 3.971 18 N -0.910 5.910 19 Si 0.891 3.109 20 H -0.287 1.287 21 H -0.305 1.305 22 H -0.274 1.274 23 C 0.103 3.897 24 C 0.095 3.905 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.034 0.966 43 H 0.262 0.738 44 H 0.034 0.966 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.384 -1.373 13.882 14.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.091 4.091 5 H 0.092 0.908 6 C -0.208 4.208 7 C -0.178 4.178 8 C 0.312 3.688 9 O -0.425 6.425 10 N -0.323 5.323 11 C 0.008 3.992 12 C -0.210 4.210 13 C 0.036 3.964 14 N -0.323 5.323 15 C -0.392 4.392 16 H 0.098 0.902 17 C -0.170 4.170 18 N -0.552 5.552 19 Si 0.722 3.278 20 H -0.214 1.214 21 H -0.233 1.233 22 H -0.200 1.200 23 C -0.023 4.023 24 C -0.031 4.031 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.145 -1.920 13.787 14.840 hybrid contribution -0.688 1.021 -0.105 1.236 sum -5.833 -0.900 13.682 14.901 Atomic orbital electron populations 1.21780 0.96265 1.01250 1.01636 1.21565 0.95327 0.97176 1.02213 1.21683 0.95049 0.96752 1.01834 1.20874 0.94091 0.94355 0.99795 0.90772 1.21925 1.03003 0.99751 0.96087 1.21802 0.92636 0.99575 1.03769 1.20529 0.89885 0.83196 0.75166 1.90607 1.71033 1.30598 1.50296 1.47382 1.08337 1.06444 1.70103 1.20547 0.79395 1.01771 0.97451 1.21727 0.98295 1.03154 0.97822 1.20245 0.88323 0.92952 0.94860 1.43863 0.98926 1.73857 1.15626 1.18866 1.15755 1.18191 0.86379 0.90236 1.25440 0.98691 0.97709 0.95198 1.69797 1.34646 1.38915 1.11880 0.86904 0.79969 0.85263 0.75713 1.21391 1.23275 1.20002 1.22645 0.90496 0.97821 0.91343 1.21782 0.96869 0.86350 0.98147 0.93067 0.93025 0.92765 0.91561 0.92248 0.92340 0.91793 0.92822 0.91019 0.93192 0.89585 0.88810 0.92212 0.90458 0.92416 0.90867 0.92714 0.94760 0.92792 0.94811 0.91175 0.91435 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.13 -1.37 5.69 -26.73 -0.15 -1.52 16 3 C -0.12 -1.37 4.68 -26.73 -0.13 -1.50 16 4 C -0.07 -1.04 2.03 -90.62 -0.18 -1.23 16 5 H 0.07 1.11 7.87 -51.93 -0.41 0.70 16 6 C -0.15 -2.51 8.70 37.16 0.32 -2.19 16 7 C -0.14 -2.06 3.60 -27.88 -0.10 -2.16 16 8 C 0.52 9.43 7.27 -10.98 -0.08 9.35 16 9 O -0.55 -11.34 13.69 5.56 0.08 -11.27 16 10 N -0.59 -10.06 2.46 -176.67 -0.43 -10.49 16 11 C 0.13 2.08 5.66 -5.92 -0.03 2.04 16 12 C -0.17 -2.99 5.63 -29.42 -0.17 -3.15 16 13 C 0.16 3.15 5.59 -5.52 -0.03 3.12 16 14 N -0.60 -13.68 2.23 -172.35 -0.38 -14.07 16 15 C -0.26 -7.25 9.64 -15.06 -0.15 -7.40 16 16 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 17 C 0.03 0.82 5.27 -17.43 -0.09 0.73 16 18 N -0.91 -27.74 13.97 55.49 0.78 -26.97 16 19 Si 0.89 21.86 24.00 -169.99 -4.08 17.78 16 20 H -0.29 -6.61 6.55 56.52 0.37 -6.24 16 21 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 22 H -0.27 -6.59 6.73 56.52 0.38 -6.21 16 23 C 0.10 2.07 4.46 -1.75 -0.01 2.06 16 24 C 0.09 1.48 4.97 -4.58 -0.02 1.46 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.76 6.57 -51.93 -0.34 0.42 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.42 6.17 -51.93 -0.32 1.10 16 34 H 0.05 0.73 6.57 -51.93 -0.34 0.39 16 35 H 0.09 1.04 7.84 -51.93 -0.41 0.64 16 36 H 0.09 1.50 7.09 -51.93 -0.37 1.14 16 37 H 0.06 0.79 8.06 -51.93 -0.42 0.38 16 38 H 0.08 1.28 7.19 -51.93 -0.37 0.90 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 1.59 7.90 -51.93 -0.41 1.18 16 41 H 0.05 1.09 8.02 -51.93 -0.42 0.67 16 42 H 0.03 0.58 7.58 -51.93 -0.39 0.19 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.03 0.69 5.71 -51.93 -0.30 0.39 16 45 H 0.07 1.55 5.34 -51.92 -0.28 1.27 16 46 H 0.07 0.92 7.73 -51.93 -0.40 0.52 16 47 H 0.07 0.93 6.49 -51.93 -0.34 0.59 16 LS Contribution 347.46 15.07 5.24 5.24 Total: -1.00 -31.58 347.46 -7.76 -39.34 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -8.50 Total: 1.88 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -0.45 Total: -1.45 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.04 Total: -51.52 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.08 Total: 17.78 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.58 -7.76 -39.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195210952.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.592 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds