Wall clock time and date at job start Tue Mar 31 2020 05:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46884 * 2 1 4 4 C 1.53004 * 109.47400 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47418 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.46755 * 55.00012 * 5 4 3 7 7 C 1.53002 * 109.47348 * 294.99993 * 5 4 3 8 8 C 1.50700 * 109.46910 * 174.99920 * 5 4 3 9 9 O 1.21278 * 120.00070 * 14.52305 * 8 5 4 10 10 N 1.34777 * 119.99784 * 194.52195 * 8 5 4 11 11 C 1.48212 * 119.97121 * 356.31256 * 10 8 5 12 12 C 1.47143 * 110.34084 * 102.47092 * 11 10 8 13 13 C 1.53795 * 111.83774 * 58.30089 * 12 11 10 14 14 N 1.43471 * 107.95945 * 281.66430 * 13 12 11 15 15 C 1.36937 * 118.93934 * 273.61162 * 14 13 12 16 16 H 1.07994 * 120.00087 * 36.20802 * 15 14 13 17 17 C 1.38811 * 119.99780 * 216.20565 * 15 14 13 18 18 N 1.31614 * 120.00049 * 24.20900 * 17 15 14 19 19 Si 1.86799 * 120.00018 * 204.21026 * 17 15 14 20 20 H 1.48496 * 109.47252 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.47178 * 59.99743 * 19 17 15 22 22 H 1.48500 * 109.47065 * 299.99949 * 19 17 15 23 23 C 1.48852 * 122.11662 * 93.88929 * 14 13 12 24 24 C 1.43618 * 119.96859 * 176.30036 * 10 8 5 25 25 H 1.09001 * 109.47261 * 299.99943 * 1 2 3 26 26 H 1.08996 * 109.47364 * 60.00402 * 1 2 3 27 27 H 1.09005 * 109.46850 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47384 * 239.99774 * 2 1 3 29 29 H 1.09004 * 109.47184 * 119.99324 * 2 1 3 30 30 H 1.08998 * 109.47972 * 59.99651 * 3 2 1 31 31 H 1.09003 * 109.47108 * 299.99361 * 3 2 1 32 32 H 1.09007 * 109.46709 * 59.99250 * 4 3 2 33 33 H 1.08995 * 109.46659 * 300.00032 * 4 3 2 34 34 H 1.09001 * 109.47122 * 304.83529 * 7 5 4 35 35 H 1.09003 * 109.46812 * 64.82768 * 7 5 4 36 36 H 1.08990 * 109.46991 * 184.83099 * 7 5 4 37 37 H 1.09008 * 109.32857 * 342.20932 * 11 10 8 38 38 H 1.08994 * 109.18768 * 222.64789 * 11 10 8 39 39 H 1.09003 * 109.00989 * 297.69241 * 12 11 10 40 40 H 1.08999 * 108.94556 * 178.86787 * 12 11 10 41 41 H 1.09000 * 109.76454 * 162.05182 * 13 12 11 42 42 H 1.08997 * 109.80884 * 41.30404 * 13 12 11 43 43 H 0.96997 * 120.00336 * 5.92436 * 18 17 15 44 44 H 1.08999 * 109.47907 * 80.35051 * 23 14 13 45 45 H 1.09004 * 109.48261 * 200.37771 * 23 14 13 46 46 H 1.08993 * 108.87858 * 31.46088 * 24 10 8 47 47 H 1.09004 * 108.87279 * 150.00338 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6449 3.4246 0.8414 7 6 3.6757 3.5684 -1.3079 8 6 5.5818 2.8870 0.1245 9 8 6.2066 1.8636 -0.0576 10 7 6.2305 4.0259 0.4382 11 6 5.4751 5.2932 0.5803 12 6 5.2840 5.6180 2.0026 13 6 6.6246 5.7437 2.7458 14 7 7.1053 4.4196 3.0181 15 6 6.6861 3.7834 4.1559 16 1 5.6757 3.9221 4.5111 17 6 7.5600 2.9603 4.8528 18 7 8.8596 3.1371 4.7429 19 14 6.8914 1.6016 5.9466 20 1 8.0213 0.8704 6.5743 21 1 6.0858 0.6593 5.1291 22 1 6.0357 2.1946 7.0055 23 6 8.0498 3.7176 2.1066 24 6 7.6531 4.0105 0.6348 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9290 0.8908 34 1 4.0383 2.9813 -2.1517 35 1 2.5894 3.6437 -1.3578 36 1 4.1113 4.5668 -1.3460 37 1 4.5020 5.1890 0.1002 38 1 6.0308 6.0974 0.0981 39 1 4.6914 4.8316 2.4699 40 1 4.7450 6.5622 2.0807 41 1 6.4779 6.2823 3.6821 42 1 7.3436 6.2761 2.1232 43 1 9.2057 3.8940 4.2448 44 1 9.0639 4.0723 2.2906 45 1 8.0013 2.6441 2.2894 46 1 8.0895 3.2454 -0.0072 47 1 8.0588 4.9816 0.3512 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195717679.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:16 Heat of formation + Delta-G solvation = -36.699569 kcal Electronic energy + Delta-G solvation = -24135.396584 eV Core-core repulsion = 20931.971056 eV Total energy + Delta-G solvation = -3203.425528 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.05522 -37.32122 -36.15282 -34.56777 -33.36570 -32.31487 -30.86291 -28.76754 -27.51478 -25.39098 -25.11209 -23.72622 -22.70295 -21.37727 -20.43251 -19.70566 -18.36898 -17.24709 -16.66860 -15.96714 -15.64092 -15.10083 -14.39213 -14.22323 -13.98723 -13.76350 -13.57651 -13.46655 -13.23937 -13.07892 -12.66810 -12.60023 -12.23485 -12.05521 -11.99079 -11.64915 -11.35251 -11.19222 -11.02462 -10.93759 -10.79283 -10.63736 -10.62107 -10.42484 -10.36740 -10.28752 -10.18508 -9.96653 -9.30732 -9.13708 -8.27875 -8.06189 -6.76936 -5.97991 -3.30087 3.12166 3.50227 3.53369 3.57295 3.73077 4.63080 4.64397 4.76218 4.90280 5.07779 5.10136 5.14396 5.18964 5.29756 5.40481 5.43935 5.52906 5.56246 5.63462 5.67959 5.74465 5.76475 5.80035 5.86561 5.93789 5.94113 6.04661 6.06407 6.10046 6.17302 6.22091 6.28219 6.33404 6.35105 6.42291 6.50806 6.74829 6.77359 6.93549 7.13025 7.26569 7.90742 8.15835 8.64340 8.72863 9.23007 9.88125 10.32880 11.23299 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013918 B = 0.005990 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.292150 B = 4673.630349 C = 5798.856653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.099 4.099 5 C -0.109 4.109 6 H 0.092 0.908 7 C -0.146 4.146 8 C 0.522 3.478 9 O -0.547 6.547 10 N -0.585 5.585 11 C 0.115 3.885 12 C -0.172 4.172 13 C 0.164 3.836 14 N -0.592 5.592 15 C -0.358 4.358 16 H 0.047 0.953 17 C -0.013 4.013 18 N -0.909 5.909 19 Si 1.058 2.942 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.292 1.292 23 C 0.142 3.858 24 C 0.097 3.903 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.029 0.971 43 H 0.268 0.732 44 H 0.032 0.968 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.824 2.598 -12.013 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.137 4.137 5 C -0.130 4.130 6 H 0.110 0.890 7 C -0.203 4.203 8 C 0.310 3.690 9 O -0.425 6.425 10 N -0.316 5.316 11 C -0.007 4.007 12 C -0.213 4.213 13 C 0.036 3.964 14 N -0.314 5.314 15 C -0.487 4.487 16 H 0.064 0.936 17 C -0.216 4.216 18 N -0.547 5.547 19 Si 0.888 3.112 20 H -0.211 1.211 21 H -0.220 1.220 22 H -0.219 1.219 23 C 0.016 3.984 24 C -0.028 4.028 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.079 0.921 44 H 0.050 0.950 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.014 0.784 -11.144 16.406 hybrid contribution -0.493 1.446 -0.759 1.706 sum -12.507 2.230 -11.903 17.409 Atomic orbital electron populations 1.21774 0.96145 1.01348 1.01613 1.21527 0.95477 0.97139 1.02208 1.21667 0.95407 0.96703 1.01882 1.21400 0.94424 0.94453 1.03464 1.21283 0.92792 0.98998 0.99947 0.88960 1.21930 1.01784 1.00445 0.96179 1.20457 0.89755 0.82873 0.75935 1.90645 1.68969 1.31910 1.50956 1.47323 1.07852 1.08310 1.68150 1.20937 0.96400 0.85497 0.97840 1.21893 1.02514 1.00750 0.96150 1.20275 0.91664 0.87699 0.96761 1.43640 1.54131 1.11390 1.22259 1.19757 0.96142 1.29805 1.03014 0.93562 1.25888 0.94620 1.02590 0.98552 1.70784 1.12611 1.31667 1.39653 0.83636 0.75152 0.76580 0.75815 1.21059 1.21969 1.21946 1.22097 0.92269 0.97758 0.86271 1.21761 0.80675 1.00915 0.99425 0.92792 0.92963 0.92994 0.92107 0.91876 0.92021 0.91979 0.91348 0.91232 0.92181 0.91547 0.91880 0.90270 0.91873 0.91407 0.92570 0.93495 0.95257 0.92102 0.95013 0.91823 0.90938 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.97 16 2 C -0.13 -1.31 5.93 -26.73 -0.16 -1.47 16 3 C -0.12 -1.31 4.97 -26.73 -0.13 -1.44 16 4 C -0.10 -1.41 4.00 -26.73 -0.11 -1.51 16 5 C -0.11 -1.57 1.87 -91.77 -0.17 -1.74 16 6 H 0.09 1.32 7.47 -51.93 -0.39 0.94 16 7 C -0.15 -1.60 8.39 37.16 0.31 -1.29 16 8 C 0.52 9.81 6.90 -10.99 -0.08 9.74 16 9 O -0.55 -12.35 15.60 5.56 0.09 -12.26 16 10 N -0.59 -10.51 2.46 -176.43 -0.43 -10.94 16 11 C 0.12 1.67 5.01 -5.91 -0.03 1.64 16 12 C -0.17 -2.85 5.64 -29.13 -0.16 -3.01 16 13 C 0.16 3.33 5.63 -5.23 -0.03 3.30 16 14 N -0.59 -14.57 2.25 -171.78 -0.39 -14.95 16 15 C -0.36 -10.01 9.02 -15.06 -0.14 -10.15 16 16 H 0.05 1.32 7.94 -52.49 -0.42 0.90 16 17 C -0.01 -0.37 4.70 -17.43 -0.08 -0.45 16 18 N -0.91 -27.64 12.93 55.49 0.72 -26.92 16 19 Si 1.06 26.16 29.98 -169.99 -5.10 21.07 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.14 3.39 5.23 -1.57 -0.01 3.39 16 24 C 0.10 1.89 5.29 -4.39 -0.02 1.87 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.60 6.67 -51.93 -0.35 0.25 16 32 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.59 6.80 -51.93 -0.35 0.24 16 36 H 0.06 0.65 5.79 -51.93 -0.30 0.35 16 37 H 0.08 0.95 4.18 -51.92 -0.22 0.74 16 38 H 0.06 0.81 8.05 -51.93 -0.42 0.39 16 39 H 0.07 1.31 7.88 -51.93 -0.41 0.90 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 1.00 8.02 -51.93 -0.42 0.58 16 42 H 0.03 0.55 7.59 -51.93 -0.39 0.16 16 43 H 0.27 8.16 6.64 -40.82 -0.27 7.89 16 44 H 0.03 0.78 7.16 -51.93 -0.37 0.41 16 45 H 0.06 1.77 7.49 -51.93 -0.39 1.39 16 46 H 0.07 1.44 7.32 -51.93 -0.38 1.06 16 47 H 0.06 0.97 7.72 -51.93 -0.40 0.57 16 LS Contribution 355.13 15.07 5.35 5.35 Total: -1.00 -32.55 355.13 -8.69 -41.24 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -8.49 Total: -0.49 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -0.44 Total: -2.09 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.10 Total: -52.82 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 26.16 SS G_CDS: -5.10 Total: 21.07 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.55 -8.69 -41.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195717679.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.538 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds