Wall clock time and date at job start Tue Mar 31 2020 06:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52989 * 109.47185 * 2 1 4 4 C 1.53003 * 109.47185 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47140 * 304.99669 * 4 3 2 6 6 C 1.53002 * 109.47142 * 64.99778 * 4 3 2 7 7 C 1.52997 * 109.47050 * 184.47097 * 6 4 3 8 8 C 1.50703 * 109.46909 * 184.99804 * 4 3 2 9 9 O 1.21277 * 120.00019 * 318.88704 * 8 4 3 10 10 N 1.34781 * 119.99766 * 138.90125 * 8 4 3 11 11 C 1.48211 * 119.96924 * 175.58177 * 10 8 4 12 12 C 1.47133 * 110.34882 * 102.45713 * 11 10 8 13 13 C 1.53801 * 111.84166 * 58.29202 * 12 11 10 14 14 N 1.43461 * 107.96163 * 281.67472 * 13 12 11 15 15 C 1.36937 * 118.93904 * 273.62367 * 14 13 12 16 16 H 1.08003 * 120.00200 * 25.00576 * 15 14 13 17 17 C 1.38814 * 120.00202 * 205.00166 * 15 14 13 18 18 N 1.31624 * 119.99870 * 16.25304 * 17 15 14 19 19 Si 1.86792 * 120.00194 * 196.25101 * 17 15 14 20 20 H 1.48510 * 109.47098 * 94.94902 * 19 17 15 21 21 H 1.48494 * 109.47301 * 214.94878 * 19 17 15 22 22 H 1.48503 * 109.47199 * 334.95151 * 19 17 15 23 23 C 1.48853 * 122.12174 * 93.65229 * 14 13 12 24 24 C 1.43621 * 119.96941 * 355.29288 * 10 8 4 25 25 H 1.08996 * 109.47261 * 60.00442 * 1 2 3 26 26 H 1.09003 * 109.47085 * 300.00014 * 1 2 3 27 27 H 1.09005 * 109.46873 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46852 * 119.99978 * 2 1 3 29 29 H 1.09001 * 109.46964 * 239.99035 * 2 1 3 30 30 H 1.09010 * 109.47208 * 299.99760 * 3 2 1 31 31 H 1.08995 * 109.47326 * 59.99834 * 3 2 1 32 32 H 1.08997 * 109.47085 * 304.47683 * 6 4 3 33 33 H 1.09001 * 109.46850 * 64.47066 * 6 4 3 34 34 H 1.09000 * 109.47302 * 302.70989 * 7 6 4 35 35 H 1.08998 * 109.46851 * 62.70738 * 7 6 4 36 36 H 1.09003 * 109.47319 * 182.70497 * 7 6 4 37 37 H 1.09003 * 109.32093 * 222.72630 * 11 10 8 38 38 H 1.09003 * 109.32381 * 342.35719 * 11 10 8 39 39 H 1.09007 * 109.00699 * 178.90061 * 12 11 10 40 40 H 1.08999 * 109.00673 * 297.76195 * 12 11 10 41 41 H 1.09003 * 109.75967 * 41.28717 * 13 12 11 42 42 H 1.09000 * 109.75915 * 162.00217 * 13 12 11 43 43 H 0.96993 * 119.99821 * 179.97438 * 18 17 15 44 44 H 1.09003 * 109.48629 * 80.57811 * 23 14 13 45 45 H 1.09002 * 109.48449 * 200.61530 * 23 14 13 46 46 H 1.08990 * 108.87597 * 31.47552 * 24 10 8 47 47 H 1.08995 * 108.86863 * 149.91821 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0806 0.8325 -1.3064 7 6 5.6064 0.7300 -1.2595 8 6 4.0723 2.8579 0.1244 9 8 3.5286 3.7502 -0.4911 10 7 5.1259 3.1320 0.9190 11 6 5.6809 4.5055 0.9651 12 6 5.2370 5.1959 2.1862 13 6 5.6581 4.4387 3.4569 14 7 4.7527 3.3407 3.6382 15 6 3.5805 3.5530 4.3133 16 1 3.1489 4.5425 4.3481 17 6 2.9467 2.4966 4.9530 18 7 3.6041 1.3813 5.1905 19 14 1.1610 2.6577 5.4767 20 1 0.2830 2.0848 4.4249 21 1 0.9506 1.9242 6.7506 22 1 0.8295 4.0922 5.6709 23 6 5.0468 1.9780 3.1165 24 6 5.7058 2.0943 1.7250 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 0.8901 29 1 1.8933 -0.5140 -0.8899 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9562 0.8899 32 1 3.6533 -0.1620 -1.4346 33 1 3.7845 1.4657 -2.1428 34 1 6.0317 1.7180 -1.0833 35 1 5.9008 0.0586 -0.4529 36 1 5.9738 0.3403 -2.2089 37 1 6.7697 4.4550 0.9548 38 1 5.3374 5.0627 0.0935 39 1 5.6727 6.1949 2.2075 40 1 4.1506 5.2830 2.1698 41 1 6.6749 4.0629 3.3421 42 1 5.6068 5.1057 4.3175 43 1 3.1614 0.6433 5.6378 44 1 5.7244 1.4655 3.7995 45 1 4.1187 1.4126 3.0327 46 1 5.5950 1.1419 1.2068 47 1 6.7680 2.3012 1.8553 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197597929.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:43 Heat of formation + Delta-G solvation = -29.984878 kcal Electronic energy + Delta-G solvation = -24883.557642 eV Core-core repulsion = 21680.423285 eV Total energy + Delta-G solvation = -3203.134357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.04963 -37.22376 -35.85390 -34.21535 -33.20483 -32.28286 -30.84945 -28.98807 -27.54422 -25.64785 -24.23784 -23.66867 -22.76537 -21.58139 -20.25135 -19.69832 -18.01888 -17.14043 -16.23834 -15.87456 -15.20682 -14.81306 -14.79462 -14.13537 -13.99751 -13.76525 -13.32971 -13.07593 -13.00853 -12.94124 -12.59114 -12.31255 -12.22500 -11.94103 -11.75685 -11.49373 -11.35341 -11.15933 -11.00773 -10.79475 -10.73776 -10.60304 -10.53345 -10.43820 -10.20964 -10.14054 -10.09962 -9.81584 -9.66638 -9.03051 -8.45242 -7.96084 -6.68636 -5.78659 -3.19139 3.20076 3.37844 3.45356 3.47312 3.61695 4.51610 4.87585 4.93614 5.12391 5.24045 5.28724 5.31156 5.38616 5.47199 5.48873 5.61095 5.70744 5.71390 5.80635 5.83574 5.90941 5.96492 5.96752 6.03935 6.09920 6.13846 6.14935 6.20506 6.28489 6.30406 6.37329 6.39491 6.48326 6.57730 6.58391 6.65936 6.84904 6.98405 7.08873 7.40852 7.49450 7.82258 8.07644 8.45075 8.79202 9.21893 9.89946 10.35163 11.29394 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012113 B = 0.008802 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.046397 B = 3180.329683 C = 4559.138404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.101 4.101 4 C -0.109 4.109 5 H 0.095 0.905 6 C -0.111 4.111 7 C -0.158 4.158 8 C 0.530 3.470 9 O -0.559 6.559 10 N -0.584 5.584 11 C 0.130 3.870 12 C -0.170 4.170 13 C 0.163 3.837 14 N -0.589 5.589 15 C -0.250 4.250 16 H 0.064 0.936 17 C 0.005 3.995 18 N -0.907 5.907 19 Si 0.895 3.105 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.280 1.280 23 C 0.163 3.837 24 C 0.076 3.924 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.032 0.968 42 H 0.045 0.955 43 H 0.252 0.748 44 H 0.041 0.959 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.524 -2.994 -10.809 11.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.139 4.139 4 C -0.131 4.131 5 H 0.113 0.887 6 C -0.149 4.149 7 C -0.215 4.215 8 C 0.319 3.681 9 O -0.438 6.438 10 N -0.314 5.314 11 C 0.008 3.992 12 C -0.211 4.211 13 C 0.035 3.965 14 N -0.311 5.311 15 C -0.380 4.380 16 H 0.081 0.919 17 C -0.193 4.193 18 N -0.552 5.552 19 Si 0.726 3.274 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.038 3.962 24 C -0.049 4.049 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.227 -2.671 -11.028 11.797 hybrid contribution -0.958 0.039 0.559 1.110 sum 2.270 -2.632 -10.468 11.030 Atomic orbital electron populations 1.21757 0.96095 1.01158 1.01880 1.21568 0.95740 0.96843 1.01905 1.21417 0.92561 0.96769 1.03166 1.21435 0.97427 0.94190 1.00016 0.88651 1.21511 0.95852 1.01095 0.96395 1.21911 0.95921 1.02136 1.01529 1.20431 0.78898 0.90601 0.78209 1.90596 1.56807 1.48354 1.48076 1.47395 1.32171 1.10243 1.41626 1.20511 0.96744 0.82774 0.99180 1.21874 1.02979 0.98443 0.97780 1.20275 0.92104 0.90171 0.93990 1.43623 1.19479 1.04999 1.62976 1.19188 0.98183 0.95347 1.25266 0.91868 1.24913 0.98576 0.97433 0.98376 1.70025 1.34713 1.05479 1.44998 0.86367 0.85771 0.77592 0.77701 1.21441 1.21825 1.20508 1.21840 0.99600 0.86916 0.87891 1.22194 0.97548 0.90293 0.94907 0.92964 0.92602 0.93049 0.91731 0.92064 0.91393 0.91267 0.90856 0.91585 0.92499 0.92292 0.92786 0.92326 0.90773 0.92852 0.91343 0.94920 0.93690 0.93765 0.94119 0.90711 0.91099 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.12 -1.67 5.69 -26.74 -0.15 -1.82 16 3 C -0.10 -1.65 4.34 -26.74 -0.12 -1.77 16 4 C -0.11 -1.76 1.78 -91.77 -0.16 -1.92 16 5 H 0.10 1.57 5.43 -51.93 -0.28 1.29 16 6 C -0.11 -1.43 5.25 -26.73 -0.14 -1.58 16 7 C -0.16 -1.86 8.73 37.16 0.32 -1.53 16 8 C 0.53 10.11 5.60 -10.98 -0.06 10.04 16 9 O -0.56 -12.31 15.98 5.56 0.09 -12.22 16 10 N -0.58 -10.55 2.14 -176.97 -0.38 -10.93 16 11 C 0.13 2.21 5.67 -5.92 -0.03 2.18 16 12 C -0.17 -3.13 5.64 -29.13 -0.16 -3.30 16 13 C 0.16 3.32 5.63 -5.23 -0.03 3.29 16 14 N -0.59 -14.10 2.54 -172.29 -0.44 -14.54 16 15 C -0.25 -6.77 9.26 -15.06 -0.14 -6.91 16 16 H 0.06 1.75 7.88 -52.48 -0.41 1.33 16 17 C 0.00 0.14 4.90 -17.43 -0.09 0.05 16 18 N -0.91 -25.31 11.01 55.49 0.61 -24.70 16 19 Si 0.90 21.89 29.58 -169.99 -5.03 16.86 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.16 3.61 5.12 -2.01 -0.01 3.60 16 24 C 0.08 1.31 4.53 -4.83 -0.02 1.29 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 29 H 0.06 0.71 6.47 -51.93 -0.34 0.38 16 30 H 0.07 1.11 8.03 -51.92 -0.42 0.70 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.07 0.82 6.37 -51.93 -0.33 0.49 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.75 6.83 -51.93 -0.35 0.39 16 35 H 0.06 0.65 7.19 -51.93 -0.37 0.28 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 38 H 0.07 1.30 7.17 -51.93 -0.37 0.93 16 39 H 0.05 0.85 8.14 -51.92 -0.42 0.42 16 40 H 0.07 1.51 7.91 -51.93 -0.41 1.10 16 41 H 0.03 0.61 7.58 -51.93 -0.39 0.22 16 42 H 0.04 0.94 8.02 -51.93 -0.42 0.52 16 43 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.04 0.96 8.00 -51.93 -0.42 0.55 16 45 H 0.07 1.85 6.15 -51.93 -0.32 1.53 16 46 H 0.07 1.08 4.03 -51.93 -0.21 0.87 16 47 H 0.06 0.92 7.73 -51.93 -0.40 0.52 16 LS Contribution 350.94 15.07 5.29 5.29 Total: -1.00 -30.12 350.94 -8.66 -38.78 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -8.38 Total: 1.40 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -0.43 Total: 0.05 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.21 Total: -50.17 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.12 -8.66 -38.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197597929.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.795 kcal (2) G-P(sol) polarization free energy of solvation -30.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds