Wall clock time and date at job start Tue Mar 31 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47621 * 2 1 4 4 C 1.52995 * 109.47490 * 184.11789 * 3 2 1 5 5 H 1.09011 * 109.47074 * 55.70042 * 4 3 2 6 6 C 1.53003 * 109.46965 * 295.70669 * 4 3 2 7 7 C 1.53003 * 109.46896 * 305.35674 * 6 4 3 8 8 C 1.50698 * 109.47304 * 175.70281 * 4 3 2 9 9 O 1.21279 * 120.00300 * 16.50951 * 8 4 3 10 10 N 1.34774 * 119.99749 * 196.50912 * 8 4 3 11 11 C 1.48213 * 119.97189 * 354.75182 * 10 8 4 12 12 C 1.47141 * 110.19873 * 102.58722 * 11 10 8 13 13 C 1.53500 * 112.03552 * 58.36049 * 12 11 10 14 14 N 1.43459 * 107.89031 * 281.58740 * 13 12 11 15 15 C 1.36938 * 118.93894 * 273.55574 * 14 13 12 16 16 H 1.07998 * 120.00110 * 24.83102 * 15 14 13 17 17 C 1.38814 * 120.00141 * 204.82947 * 15 14 13 18 18 N 1.31622 * 120.00097 * 17.31714 * 17 15 14 19 19 Si 1.86800 * 120.00043 * 197.32135 * 17 15 14 20 20 H 1.48500 * 109.47337 * 59.99936 * 19 17 15 21 21 H 1.48505 * 109.47097 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47056 * 299.99671 * 19 17 15 23 23 C 1.48856 * 122.12265 * 93.58206 * 14 13 12 24 24 C 1.43625 * 119.96748 * 174.77310 * 10 8 4 25 25 H 1.09004 * 109.46699 * 60.00133 * 1 2 3 26 26 H 1.08998 * 109.47422 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46875 * 300.00456 * 1 2 3 28 28 H 1.09004 * 109.47399 * 239.99720 * 2 1 3 29 29 H 1.08999 * 109.46975 * 120.00251 * 2 1 3 30 30 H 1.08991 * 109.46999 * 64.11371 * 3 2 1 31 31 H 1.09006 * 109.46956 * 304.11309 * 3 2 1 32 32 H 1.08991 * 109.47614 * 65.36187 * 6 4 3 33 33 H 1.09005 * 109.47005 * 185.36662 * 6 4 3 34 34 H 1.09003 * 109.46616 * 66.04246 * 7 6 4 35 35 H 1.08996 * 109.47002 * 186.04149 * 7 6 4 36 36 H 1.09005 * 109.47047 * 306.04757 * 7 6 4 37 37 H 1.09003 * 109.32454 * 222.76152 * 11 10 8 38 38 H 1.08996 * 109.32711 * 342.40754 * 11 10 8 39 39 H 1.09007 * 109.00401 * 178.81747 * 12 11 10 40 40 H 1.09004 * 109.00560 * 297.59482 * 12 11 10 41 41 H 1.09007 * 109.83969 * 161.96720 * 13 12 11 42 42 H 1.09000 * 109.79660 * 41.18073 * 13 12 11 43 43 H 0.96993 * 120.00186 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.48459 * 200.63978 * 23 14 13 45 45 H 1.08994 * 109.49112 * 80.60911 * 23 14 13 46 46 H 1.09001 * 108.87378 * 31.44467 * 24 10 8 47 47 H 1.08999 * 108.87663 * 149.88046 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5665 1.4437 -0.1036 5 1 3.8711 0.8853 -0.9889 6 6 4.1628 0.7874 1.1433 7 6 3.6286 1.4889 2.3937 8 6 4.0617 2.8630 -0.2099 9 8 3.3325 3.7839 0.0920 10 7 5.3150 3.1089 -0.6403 11 6 6.2437 1.9830 -0.8978 12 6 6.3496 1.7322 -2.3438 13 6 6.8378 2.9702 -3.1088 14 7 5.7259 3.8648 -3.2549 15 6 4.8815 3.7038 -4.3209 16 1 4.7877 2.7377 -4.7943 17 6 4.1461 4.7824 -4.7930 18 7 4.4921 6.0091 -4.4644 19 14 2.6655 4.4929 -5.8945 20 1 1.6657 3.6655 -5.1726 21 1 2.0570 5.7976 -6.2590 22 1 3.0962 3.7855 -7.1270 23 6 5.4607 4.9629 -2.2855 24 6 5.7494 4.4620 -0.8487 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.7382 1.9345 0.9245 31 1 1.6178 1.9772 -0.8509 32 1 3.8820 -0.2654 1.1694 33 1 5.2491 0.8731 1.1148 34 1 2.5564 1.3123 2.4793 35 1 4.1334 1.0941 3.2754 36 1 3.8154 2.5601 2.3171 37 1 7.2287 2.2300 -0.5016 38 1 5.8702 1.0867 -0.4027 39 1 7.0521 0.9159 -2.5120 40 1 5.3712 1.4410 -2.7262 41 1 7.2061 2.6763 -4.0918 42 1 7.6340 3.4603 -2.5484 43 1 3.9780 6.7627 -4.7940 44 1 4.4176 5.2701 -2.3605 45 1 6.1066 5.8112 -2.5113 46 1 5.2354 5.1105 -0.1392 47 1 6.8220 4.5204 -0.6638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197597930.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:48 Heat of formation + Delta-G solvation = -26.536424 kcal Electronic energy + Delta-G solvation = -24631.480892 eV Core-core repulsion = 21428.496071 eV Total energy + Delta-G solvation = -3202.984821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.10389 -37.33351 -36.03678 -34.32301 -32.81314 -32.25083 -30.87576 -28.84832 -27.55306 -25.46918 -25.08844 -23.46025 -22.91837 -21.75941 -19.95347 -19.53806 -18.19186 -16.80814 -16.26874 -15.93876 -15.59790 -15.24202 -14.46580 -14.09423 -13.87745 -13.71644 -13.64956 -13.35251 -13.13121 -12.78142 -12.56752 -12.29409 -12.24418 -11.93437 -11.71675 -11.52332 -11.34528 -11.08237 -10.93859 -10.86422 -10.78001 -10.66014 -10.58262 -10.45840 -10.33051 -10.23151 -10.12236 -9.73987 -9.67444 -9.02420 -8.39203 -7.92138 -6.64875 -5.73096 -3.14172 3.22854 3.41504 3.48118 3.49580 3.64680 4.55858 4.73096 4.82766 4.96944 5.14707 5.19139 5.21790 5.31494 5.35496 5.45059 5.55080 5.65357 5.68756 5.70368 5.75940 5.84432 5.87412 5.91284 5.95284 6.00718 6.05563 6.14416 6.20670 6.22659 6.25061 6.32898 6.42639 6.44718 6.47592 6.50721 6.61092 6.79888 7.00572 7.09690 7.50746 7.67426 7.85059 8.04297 8.50310 8.84169 9.26455 9.95493 10.41029 11.34971 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014746 B = 0.006782 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.416092 B = 4127.837789 C = 5085.087439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.103 4.103 4 C -0.107 4.107 5 H 0.091 0.909 6 C -0.117 4.117 7 C -0.155 4.155 8 C 0.525 3.475 9 O -0.547 6.547 10 N -0.585 5.585 11 C 0.117 3.883 12 C -0.173 4.173 13 C 0.163 3.837 14 N -0.590 5.590 15 C -0.257 4.257 16 H 0.063 0.937 17 C 0.007 3.993 18 N -0.903 5.903 19 Si 0.897 3.103 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.168 3.832 24 C 0.089 3.911 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.045 0.955 42 H 0.032 0.968 43 H 0.254 0.746 44 H 0.075 0.925 45 H 0.038 0.962 46 H 0.070 0.930 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 -12.113 11.404 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.140 4.140 4 C -0.128 4.128 5 H 0.109 0.891 6 C -0.154 4.154 7 C -0.212 4.212 8 C 0.313 3.687 9 O -0.425 6.425 10 N -0.317 5.317 11 C -0.006 4.006 12 C -0.215 4.215 13 C 0.034 3.966 14 N -0.311 5.311 15 C -0.387 4.387 16 H 0.080 0.920 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.727 3.273 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.042 3.958 24 C -0.036 4.036 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.093 0.907 45 H 0.056 0.944 46 H 0.088 0.912 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.608 -11.415 11.518 16.227 hybrid contribution -0.715 -0.116 -0.840 1.109 sum -0.107 -11.531 10.678 15.716 Atomic orbital electron populations 1.21759 0.96037 1.01133 1.01983 1.21565 0.95762 0.97017 1.01740 1.21468 0.92700 0.96305 1.03568 1.21369 0.97386 0.94279 0.99772 0.89092 1.21615 1.00287 0.99712 0.93794 1.21849 1.01292 1.01316 0.96730 1.20344 0.81215 0.90880 0.76298 1.90640 1.55126 1.46603 1.50143 1.47340 1.12431 1.06998 1.64888 1.20882 0.93050 0.89319 0.97302 1.21898 1.02435 1.01135 0.96007 1.20187 0.89755 0.89593 0.97027 1.43664 1.27339 1.34135 1.25970 1.19059 1.18182 0.93734 1.07719 0.91959 1.24946 1.00410 0.95079 0.98759 1.70021 1.39319 0.97224 1.48203 0.86453 0.83581 0.76876 0.80380 1.21119 1.21635 1.20997 1.21828 1.01784 0.89020 0.83155 1.21949 0.98055 0.82827 1.00720 0.92633 0.93075 0.92856 0.92107 0.92053 0.90827 0.91419 0.91083 0.91363 0.92211 0.93090 0.92208 0.91889 0.90570 0.92697 0.91443 0.93676 0.94930 0.93635 0.90696 0.94391 0.91173 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 37.16 0.37 -1.26 16 2 C -0.12 -1.40 5.57 -26.73 -0.15 -1.55 16 3 C -0.10 -1.49 3.69 -26.73 -0.10 -1.59 16 4 C -0.11 -1.56 1.66 -91.77 -0.15 -1.72 16 5 H 0.09 1.33 7.31 -51.92 -0.38 0.95 16 6 C -0.12 -1.33 4.89 -26.73 -0.13 -1.46 16 7 C -0.15 -1.81 9.11 37.16 0.34 -1.47 16 8 C 0.52 9.91 5.88 -10.99 -0.06 9.84 16 9 O -0.55 -12.35 15.34 5.56 0.09 -12.27 16 10 N -0.59 -10.62 2.45 -176.65 -0.43 -11.05 16 11 C 0.12 1.70 5.05 -5.91 -0.03 1.67 16 12 C -0.17 -2.83 5.61 -29.29 -0.16 -3.00 16 13 C 0.16 3.25 5.63 -5.39 -0.03 3.22 16 14 N -0.59 -14.49 2.53 -172.18 -0.44 -14.93 16 15 C -0.26 -7.08 9.25 -15.06 -0.14 -7.22 16 16 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 17 C 0.01 0.19 4.87 -17.43 -0.08 0.11 16 18 N -0.90 -26.81 11.07 55.49 0.61 -26.20 16 19 Si 0.90 22.51 29.59 -169.99 -5.03 17.48 16 20 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 C 0.17 4.10 5.19 -1.75 -0.01 4.10 16 24 C 0.09 1.77 5.29 -4.58 -0.02 1.75 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.61 6.88 -51.93 -0.36 0.25 16 30 H 0.07 1.09 6.15 -51.93 -0.32 0.77 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.07 0.68 6.91 -51.93 -0.36 0.32 16 33 H 0.07 0.74 5.92 -51.93 -0.31 0.43 16 34 H 0.06 0.68 6.62 -51.93 -0.34 0.33 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.85 7.01 -51.93 -0.36 0.49 16 37 H 0.06 0.81 8.06 -51.93 -0.42 0.40 16 38 H 0.08 0.93 4.24 -51.93 -0.22 0.71 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.27 7.76 -51.93 -0.40 0.87 16 41 H 0.04 0.92 8.02 -51.92 -0.42 0.50 16 42 H 0.03 0.61 7.59 -51.93 -0.39 0.21 16 43 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.07 2.14 6.58 -51.93 -0.34 1.80 16 45 H 0.04 0.98 8.00 -51.93 -0.42 0.57 16 46 H 0.07 1.43 7.30 -51.93 -0.38 1.06 16 47 H 0.05 0.93 7.73 -51.93 -0.40 0.53 16 LS Contribution 349.16 15.07 5.26 5.26 Total: -1.00 -31.63 349.16 -8.64 -40.26 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -8.33 Total: 0.02 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -0.37 Total: 1.43 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.26 Total: -52.18 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.48 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.63 -8.64 -40.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197597930.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.728 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds