Wall clock time and date at job start Tue Mar 31 2020 06:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46851 * 2 1 4 4 C 1.53004 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47304 * 305.00324 * 4 3 2 6 6 C 1.53005 * 109.46915 * 65.00021 * 4 3 2 7 7 C 1.52992 * 109.47321 * 185.00183 * 4 3 2 8 8 C 1.50700 * 109.47257 * 174.99983 * 7 4 3 9 9 O 1.21279 * 120.00113 * 0.02562 * 8 7 4 10 10 N 1.34784 * 119.99961 * 180.02562 * 8 7 4 11 11 C 1.46927 * 120.62995 * 359.72079 * 10 8 7 12 12 C 1.53626 * 108.53906 * 126.36585 * 11 10 8 13 13 C 1.53041 * 109.24183 * 54.85853 * 12 11 10 14 14 N 1.46493 * 109.46261 * 178.48654 * 13 12 11 15 15 C 1.36948 * 119.99998 * 275.06879 * 14 13 12 16 16 H 1.07996 * 119.99762 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99902 * 179.97438 * 15 14 13 18 18 N 1.31623 * 120.00137 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99861 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47288 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47331 * 120.00219 * 19 17 15 22 22 H 1.48504 * 109.47015 * 239.99948 * 19 17 15 23 23 C 1.53036 * 109.53807 * 298.50777 * 13 12 11 24 24 C 1.46923 * 120.62964 * 179.97438 * 10 8 7 25 25 H 1.08998 * 109.47042 * 299.99478 * 1 2 3 26 26 H 1.09005 * 109.47116 * 59.99934 * 1 2 3 27 27 H 1.08999 * 109.46844 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47042 * 240.00522 * 2 1 3 29 29 H 1.08997 * 109.47314 * 120.00320 * 2 1 3 30 30 H 1.08998 * 109.46871 * 60.00417 * 3 2 1 31 31 H 1.08997 * 109.47422 * 300.00254 * 3 2 1 32 32 H 1.09000 * 109.46372 * 60.00530 * 6 4 3 33 33 H 1.08999 * 109.46411 * 179.97438 * 6 4 3 34 34 H 1.08998 * 109.47030 * 299.99851 * 6 4 3 35 35 H 1.09004 * 109.47330 * 55.00006 * 7 4 3 36 36 H 1.08997 * 109.47279 * 295.00493 * 7 4 3 37 37 H 1.08998 * 109.58645 * 246.19910 * 11 10 8 38 38 H 1.09001 * 109.58579 * 6.63067 * 11 10 8 39 39 H 1.08990 * 109.63926 * 294.86483 * 12 11 10 40 40 H 1.09009 * 109.45677 * 174.73785 * 12 11 10 41 41 H 1.09009 * 109.44893 * 58.52020 * 13 12 11 42 42 H 0.97000 * 120.00421 * 95.06454 * 14 13 12 43 43 H 0.96996 * 120.00161 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.49825 * 301.41219 * 23 13 12 45 45 H 1.09001 * 109.52568 * 181.32976 * 23 13 12 46 46 H 1.09007 * 109.58781 * 353.37617 * 24 10 8 47 47 H 1.08998 * 109.58580 * 113.65434 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8533 0.8427 6 6 4.0805 0.8328 -1.3065 7 6 4.0799 2.8796 0.1264 8 6 5.5817 2.8707 0.2506 9 8 6.1849 1.8186 0.2391 10 7 6.2546 4.0320 0.3744 11 6 5.5384 5.3148 0.3838 12 6 5.9488 6.0942 1.6424 13 6 7.4731 6.2255 1.6797 14 7 7.8677 6.9992 2.8594 15 6 7.8810 8.3676 2.8077 16 1 7.6001 8.8763 1.8974 17 6 8.2544 9.1008 3.9257 18 7 8.5962 8.4807 5.0353 19 14 8.2717 10.9674 3.8555 20 1 7.8496 11.4159 2.5043 21 1 7.3355 11.5098 4.8726 22 1 9.6446 11.4604 4.1337 23 6 8.1052 4.8334 1.7481 24 6 7.7187 4.0394 0.4969 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.7175 1.4223 -2.1484 33 1 5.1705 0.8333 -1.3061 34 1 3.7173 -0.1910 -1.3960 35 1 3.6449 3.3434 1.0118 36 1 3.7918 3.4462 -0.7591 37 1 5.8019 5.8869 -0.5058 38 1 4.4637 5.1332 0.3990 39 1 5.6078 5.5619 2.5303 40 1 5.4987 7.0867 1.6179 41 1 7.8155 6.7359 0.7794 42 1 8.1196 6.5423 3.6771 43 1 8.8574 8.9930 5.8164 44 1 7.7439 4.3130 2.6351 45 1 9.1900 4.9280 1.7984 46 1 8.0831 3.0159 0.5867 47 1 8.1568 4.5071 -0.3848 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199691072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:51 Heat of formation + Delta-G solvation = -56.882676 kcal Electronic energy + Delta-G solvation = -22693.835001 eV Core-core repulsion = 19489.534268 eV Total energy + Delta-G solvation = -3204.300733 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.18342 -37.79216 -36.59907 -34.47833 -32.95749 -32.04659 -30.85610 -29.37032 -27.86724 -26.76272 -24.79400 -23.02316 -22.85309 -21.89299 -20.48928 -19.90946 -18.64442 -17.16274 -16.97172 -15.99034 -15.55662 -15.36674 -14.85315 -14.31241 -14.11323 -13.87285 -13.70500 -13.66915 -13.42368 -13.22763 -13.13485 -12.48702 -12.36190 -12.10460 -11.90615 -11.81958 -11.64049 -11.55076 -11.13443 -10.99231 -10.91174 -10.86317 -10.79879 -10.71120 -10.58827 -10.46179 -10.22038 -9.83630 -9.69994 -9.50496 -8.93690 -8.44884 -7.00272 -5.80193 -3.09517 2.74949 3.14244 3.40241 3.45739 3.48198 4.44015 4.55123 4.59108 4.68558 4.89781 4.94041 5.03890 5.11832 5.28621 5.31763 5.35905 5.38601 5.43033 5.49386 5.50275 5.52568 5.59942 5.64136 5.68020 5.71869 5.73830 5.82007 5.93537 5.95972 5.98921 6.02136 6.08746 6.22328 6.29242 6.36092 6.38591 6.40008 6.50949 6.63988 6.89018 7.02513 7.57145 7.66271 8.31228 8.38097 9.49304 10.07005 10.41558 11.42438 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028484 B = 0.002994 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.765044 B = 9349.246767 C = 9877.032940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.116 4.116 4 C -0.076 4.076 5 H 0.077 0.923 6 C -0.153 4.153 7 C -0.137 4.137 8 C 0.514 3.486 9 O -0.548 6.548 10 N -0.608 5.608 11 C 0.107 3.893 12 C -0.151 4.151 13 C 0.179 3.821 14 N -0.725 5.725 15 C -0.239 4.239 16 H 0.071 0.929 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.138 4.138 24 C 0.116 3.884 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.047 0.953 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.751 -13.729 -12.380 22.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.095 4.095 5 H 0.095 0.905 6 C -0.210 4.210 7 C -0.177 4.177 8 C 0.303 3.697 9 O -0.426 6.426 10 N -0.341 5.341 11 C -0.017 4.017 12 C -0.192 4.192 13 C 0.069 3.931 14 N -0.365 5.365 15 C -0.370 4.370 16 H 0.089 0.911 17 C -0.210 4.210 18 N -0.580 5.580 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.177 4.177 24 C -0.007 4.007 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.105 0.895 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.414 -14.076 -12.423 22.507 hybrid contribution 0.023 1.168 0.432 1.246 sum -12.391 -12.908 -11.991 21.539 Atomic orbital electron populations 1.21784 0.96099 1.01420 1.01720 1.21570 0.95510 0.97033 1.02229 1.21687 0.94769 0.96906 1.01979 1.20908 0.94351 0.94410 0.99798 0.90455 1.21985 1.03103 1.00011 0.95880 1.21784 0.92480 0.99398 1.04000 1.20657 0.90085 0.83198 0.75794 1.90625 1.70399 1.30610 1.51009 1.48223 1.07709 1.06348 1.71836 1.21955 0.96183 0.83860 0.99675 1.22748 1.00900 0.99808 0.95734 1.20161 0.90929 0.90077 0.91961 1.42453 1.80198 1.03227 1.10615 1.19276 1.38006 0.82574 0.97169 0.91119 1.24760 1.02284 0.97926 0.96031 1.69673 1.51943 1.34158 1.02258 0.86134 0.77227 0.85727 0.77193 1.20554 1.21883 1.21873 1.22189 1.01426 0.96919 0.97206 1.21579 0.79280 1.01737 0.98114 0.92795 0.92866 0.92959 0.91759 0.92041 0.91953 0.91990 0.93576 0.90723 0.92899 0.88933 0.89145 0.91518 0.90435 0.92194 0.90708 0.93462 0.78272 0.93530 0.91903 0.90641 0.89457 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.13 -0.97 5.69 -26.73 -0.15 -1.12 16 3 C -0.12 -0.93 4.68 -26.73 -0.13 -1.06 16 4 C -0.08 -0.76 2.04 -90.62 -0.18 -0.94 16 5 H 0.08 0.90 7.96 -51.93 -0.41 0.49 16 6 C -0.15 -1.57 8.69 37.16 0.32 -1.24 16 7 C -0.14 -1.41 3.52 -27.89 -0.10 -1.50 16 8 C 0.51 7.11 7.42 -10.98 -0.08 7.03 16 9 O -0.55 -9.14 13.38 5.56 0.07 -9.06 16 10 N -0.61 -8.37 2.97 -172.53 -0.51 -8.88 16 11 C 0.11 1.34 6.37 -3.48 -0.02 1.32 16 12 C -0.15 -2.47 5.67 -26.38 -0.15 -2.62 16 13 C 0.18 3.38 2.73 -67.89 -0.19 3.20 16 14 N -0.72 -17.69 5.12 -53.39 -0.27 -17.96 16 15 C -0.24 -6.45 9.93 -15.05 -0.15 -6.60 16 16 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 19 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 C -0.14 -2.29 5.55 -26.63 -0.15 -2.44 16 24 C 0.12 1.67 6.43 -3.73 -0.02 1.64 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.95 5.95 -51.93 -0.31 0.64 16 34 H 0.05 0.49 6.57 -51.93 -0.34 0.15 16 35 H 0.09 0.88 7.70 -51.93 -0.40 0.48 16 36 H 0.09 0.78 7.93 -51.93 -0.41 0.37 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.79 5.93 -51.93 -0.31 0.48 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.30 8.14 -51.92 -0.42 0.87 16 41 H 0.05 0.91 8.08 -51.92 -0.42 0.49 16 42 H 0.38 10.11 7.80 -40.82 -0.32 9.79 16 43 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.09 1.31 7.01 -51.93 -0.36 0.94 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 362.99 15.07 5.47 5.47 Total: -1.00 -30.64 362.99 -8.93 -39.57 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -8.67 Total: 6.54 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -0.72 Total: -5.50 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.06 Total: -54.03 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.07 Total: -9.06 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.64 -8.93 -39.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199691072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.310 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds