Wall clock time and date at job start Tue Mar 31 2020 05:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47041 * 2 1 4 4 C 1.53001 * 109.47041 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47041 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47462 * 304.99281 * 5 4 3 7 7 C 1.52996 * 109.47643 * 64.99974 * 5 4 3 8 8 C 1.50708 * 109.47029 * 185.00260 * 5 4 3 9 9 O 1.21286 * 119.99553 * 344.67219 * 8 5 4 10 10 N 1.34779 * 120.00297 * 164.68098 * 8 5 4 11 11 C 1.46923 * 120.62849 * 354.71717 * 10 8 5 12 12 C 1.53188 * 108.89417 * 233.51709 * 11 10 8 13 13 C 1.53073 * 109.29356 * 305.57806 * 12 11 10 14 14 N 1.46501 * 109.45448 * 181.23947 * 13 12 11 15 15 C 1.36938 * 119.99722 * 84.79087 * 14 13 12 16 16 H 1.08003 * 119.99930 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00181 * 180.02562 * 15 14 13 18 18 N 1.31620 * 119.99616 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00209 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47382 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47494 * 119.99955 * 19 17 15 22 22 H 1.48511 * 109.47156 * 239.99884 * 19 17 15 23 23 C 1.53047 * 109.65894 * 61.15237 * 13 12 11 24 24 C 1.46925 * 120.63086 * 174.69411 * 10 8 5 25 25 H 1.09004 * 109.47462 * 60.00010 * 1 2 3 26 26 H 1.08998 * 109.47776 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47301 * 300.00152 * 1 2 3 28 28 H 1.08993 * 109.46860 * 239.99848 * 2 1 3 29 29 H 1.09004 * 109.46813 * 119.99606 * 2 1 3 30 30 H 1.09004 * 109.47198 * 59.99785 * 3 2 1 31 31 H 1.08999 * 109.47249 * 299.99896 * 3 2 1 32 32 H 1.09004 * 109.47301 * 59.99848 * 4 3 2 33 33 H 1.08999 * 109.47014 * 300.00040 * 4 3 2 34 34 H 1.08996 * 109.47047 * 53.59210 * 7 5 4 35 35 H 1.08997 * 109.47301 * 173.59441 * 7 5 4 36 36 H 1.08998 * 109.46778 * 293.59578 * 7 5 4 37 37 H 1.09002 * 109.58859 * 353.37733 * 11 10 8 38 38 H 1.09000 * 109.58788 * 113.65760 * 11 10 8 39 39 H 1.09002 * 109.49722 * 65.38679 * 12 11 10 40 40 H 1.09002 * 109.50226 * 185.48510 * 12 11 10 41 41 H 1.09000 * 109.34938 * 301.12720 * 13 12 11 42 42 H 0.96992 * 120.00175 * 264.79014 * 14 13 12 43 43 H 0.97004 * 119.99463 * 179.97438 * 18 17 15 44 44 H 1.08994 * 109.50020 * 178.74609 * 23 13 12 45 45 H 1.09002 * 109.52194 * 58.66571 * 23 13 12 46 46 H 1.08996 * 109.58346 * 246.20228 * 24 10 8 47 47 H 1.08994 * 109.58489 * 6.48279 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8849 0.0000 6 1 3.6458 3.4235 -0.8424 7 6 3.6747 3.5698 1.3067 8 6 5.5820 2.8867 -0.1233 9 8 6.2078 1.8668 0.0749 10 7 6.2298 4.0215 -0.4536 11 6 5.4809 5.2345 -0.8089 12 6 5.9713 5.7395 -2.1695 13 6 7.4899 5.9259 -2.1225 14 7 7.9590 6.4369 -3.4128 15 6 7.9293 7.7820 -3.6682 16 1 7.5605 8.4660 -2.9182 17 6 8.3732 8.2662 -4.8910 18 7 8.8232 7.4326 -5.8048 19 14 8.3334 10.1010 -5.2391 20 1 7.7880 10.8173 -4.0581 21 1 9.7105 10.5821 -5.5179 22 1 7.4695 10.3625 -6.4185 23 6 8.1646 4.5836 -1.8300 24 6 7.6982 4.0691 -0.4646 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9288 0.8909 34 1 4.0122 2.9695 2.1514 35 1 4.1331 4.5575 1.3566 36 1 2.5900 3.6705 1.3429 37 1 4.4172 5.0036 -0.8666 38 1 5.6477 6.0016 -0.0527 39 1 5.7198 5.0108 -2.9402 40 1 5.4926 6.6916 -2.3984 41 1 7.7422 6.6379 -1.3367 42 1 8.2906 5.8226 -4.0862 43 1 9.1331 7.7710 -6.6595 44 1 9.2465 4.7150 -1.8191 45 1 7.8933 3.8637 -2.6022 46 1 8.0478 4.7419 0.3184 47 1 8.0975 3.0696 -0.2925 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200349559.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:21 Heat of formation + Delta-G solvation = -57.450632 kcal Electronic energy + Delta-G solvation = -22802.436367 eV Core-core repulsion = 19598.111006 eV Total energy + Delta-G solvation = -3204.325361 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.27774 -37.62154 -36.37857 -34.51906 -33.61240 -31.95743 -30.77909 -29.34106 -28.64581 -25.69088 -24.70894 -23.14638 -22.95609 -21.82899 -21.00417 -19.88955 -18.60768 -17.23563 -16.98336 -15.89203 -15.80983 -15.16243 -14.83995 -14.28807 -14.13903 -13.82968 -13.69773 -13.67617 -13.38993 -13.23044 -13.06609 -12.77713 -12.31564 -12.30777 -11.92447 -11.86534 -11.56765 -11.50937 -11.17992 -11.09468 -10.99039 -10.92107 -10.82245 -10.72793 -10.64641 -10.46822 -10.21864 -9.83477 -9.69432 -9.49857 -8.93184 -8.45477 -6.99855 -5.79848 -3.09109 2.73932 3.12712 3.40430 3.45854 3.48366 4.41237 4.52992 4.55475 4.69316 4.88008 4.91404 4.98037 5.01405 5.24918 5.26530 5.34845 5.35817 5.41428 5.44471 5.50566 5.53353 5.57401 5.62595 5.67841 5.72243 5.73352 5.76950 5.85601 5.94126 5.95337 6.00678 6.02790 6.17105 6.22750 6.24207 6.37313 6.40090 6.51020 6.64166 6.89214 7.02792 7.56849 7.66479 8.30011 8.38441 9.49652 10.07398 10.42043 11.42802 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025284 B = 0.003132 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.144670 B = 8937.608426 C = 9374.711454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.100 4.100 5 C -0.112 4.112 6 H 0.095 0.905 7 C -0.142 4.142 8 C 0.518 3.482 9 O -0.550 6.550 10 N -0.606 5.606 11 C 0.106 3.894 12 C -0.151 4.151 13 C 0.179 3.821 14 N -0.725 5.725 15 C -0.239 4.239 16 H 0.071 0.929 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.138 4.138 24 C 0.115 3.885 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.047 0.953 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.727 -10.388 14.178 22.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.138 4.138 5 C -0.133 4.133 6 H 0.113 0.887 7 C -0.200 4.200 8 C 0.306 3.694 9 O -0.429 6.429 10 N -0.339 5.339 11 C -0.017 4.017 12 C -0.193 4.193 13 C 0.069 3.931 14 N -0.365 5.365 15 C -0.370 4.370 16 H 0.089 0.911 17 C -0.210 4.210 18 N -0.580 5.580 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.177 4.177 24 C -0.008 4.008 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.380 -10.717 14.275 22.308 hybrid contribution 0.092 0.996 -0.689 1.215 sum -13.288 -9.720 13.586 21.346 Atomic orbital electron populations 1.21780 0.96019 1.01460 1.01742 1.21524 0.95634 0.97010 1.02135 1.21683 0.95184 0.96834 1.02146 1.21423 0.94690 0.94269 1.03385 1.21346 0.92312 0.99107 1.00563 0.88729 1.21795 1.01931 1.00544 0.95723 1.20641 0.90035 0.82679 0.76025 1.90654 1.69036 1.31974 1.51194 1.48173 1.07209 1.11414 1.67080 1.21907 0.95682 0.86108 0.98009 1.22683 1.00677 1.01369 0.94534 1.20163 0.90519 0.92393 0.90019 1.42450 1.75657 1.05334 1.13041 1.19273 1.35366 0.83718 0.98644 0.91125 1.24759 1.01872 0.97680 0.96703 1.69678 1.48705 1.32991 1.06655 0.86136 0.77216 0.85179 0.77752 1.20555 1.21870 1.21890 1.22189 1.01062 0.98436 0.96030 1.21599 0.79091 1.02331 0.97737 0.92754 0.92931 0.92850 0.91999 0.92052 0.91742 0.91950 0.91511 0.91135 0.92101 0.91990 0.91352 0.90318 0.91586 0.92232 0.90629 0.93486 0.78271 0.93536 0.90636 0.91879 0.91725 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.13 -0.97 5.93 -26.73 -0.16 -1.12 16 3 C -0.12 -0.97 4.97 -26.73 -0.13 -1.11 16 4 C -0.10 -1.02 4.01 -26.73 -0.11 -1.13 16 5 C -0.11 -1.19 1.87 -91.77 -0.17 -1.36 16 6 H 0.09 0.93 6.58 -51.93 -0.34 0.59 16 7 C -0.14 -1.23 8.54 37.16 0.32 -0.92 16 8 C 0.52 7.42 6.89 -10.98 -0.08 7.34 16 9 O -0.55 -9.69 15.51 5.55 0.09 -9.61 16 10 N -0.61 -8.49 2.97 -172.77 -0.51 -9.00 16 11 C 0.11 1.35 5.37 -3.71 -0.02 1.33 16 12 C -0.15 -2.50 5.67 -26.60 -0.15 -2.65 16 13 C 0.18 3.41 2.73 -67.87 -0.19 3.22 16 14 N -0.72 -17.75 5.12 -53.36 -0.27 -18.02 16 15 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 16 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -27.96 13.06 55.49 0.72 -27.24 16 19 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 23 C -0.14 -2.31 5.55 -26.61 -0.15 -2.46 16 24 C 0.12 1.68 6.44 -3.71 -0.02 1.66 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.47 6.71 -51.93 -0.35 0.12 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.53 7.06 -51.93 -0.37 0.17 16 36 H 0.07 0.47 6.89 -51.93 -0.36 0.12 16 37 H 0.08 0.83 5.32 -51.93 -0.28 0.55 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 42 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 43 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 1.33 7.00 -51.93 -0.36 0.97 16 LS Contribution 364.49 15.07 5.49 5.49 Total: -1.00 -31.10 364.49 -8.92 -40.02 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -8.68 Total: 6.28 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -0.73 Total: -4.96 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.06 Total: -54.26 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.10 -8.92 -40.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200349559.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.430 kcal (2) G-P(sol) polarization free energy of solvation -31.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds