Wall clock time and date at job start Tue Mar 31 2020 05:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47041 * 2 1 4 4 C 1.53001 * 109.47041 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47041 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47462 * 304.99281 * 5 4 3 7 7 C 1.52996 * 109.47643 * 64.99974 * 5 4 3 8 8 C 1.50708 * 109.47029 * 185.00260 * 5 4 3 9 9 O 1.21286 * 119.99553 * 344.67219 * 8 5 4 10 10 N 1.34779 * 120.00297 * 164.68098 * 8 5 4 11 11 C 1.46923 * 120.62849 * 354.71717 * 10 8 5 12 12 C 1.53188 * 108.89417 * 233.51709 * 11 10 8 13 13 C 1.53073 * 109.29356 * 305.57806 * 12 11 10 14 14 N 1.46501 * 109.45448 * 181.23947 * 13 12 11 15 15 C 1.36938 * 119.99722 * 84.79087 * 14 13 12 16 16 H 1.08003 * 119.99930 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00181 * 180.02562 * 15 14 13 18 18 N 1.31620 * 119.99616 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00209 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47382 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47494 * 119.99955 * 19 17 15 22 22 H 1.48511 * 109.47156 * 239.99884 * 19 17 15 23 23 C 1.53047 * 109.65894 * 61.15237 * 13 12 11 24 24 C 1.46925 * 120.63086 * 174.69411 * 10 8 5 25 25 H 1.09004 * 109.47462 * 60.00010 * 1 2 3 26 26 H 1.08998 * 109.47776 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47301 * 300.00152 * 1 2 3 28 28 H 1.08993 * 109.46860 * 239.99848 * 2 1 3 29 29 H 1.09004 * 109.46813 * 119.99606 * 2 1 3 30 30 H 1.09004 * 109.47198 * 59.99785 * 3 2 1 31 31 H 1.08999 * 109.47249 * 299.99896 * 3 2 1 32 32 H 1.09004 * 109.47301 * 59.99848 * 4 3 2 33 33 H 1.08999 * 109.47014 * 300.00040 * 4 3 2 34 34 H 1.08996 * 109.47047 * 53.59210 * 7 5 4 35 35 H 1.08997 * 109.47301 * 173.59441 * 7 5 4 36 36 H 1.08998 * 109.46778 * 293.59578 * 7 5 4 37 37 H 1.09002 * 109.58859 * 353.37733 * 11 10 8 38 38 H 1.09000 * 109.58788 * 113.65760 * 11 10 8 39 39 H 1.09002 * 109.49722 * 65.38679 * 12 11 10 40 40 H 1.09002 * 109.50226 * 185.48510 * 12 11 10 41 41 H 1.09000 * 109.34938 * 301.12720 * 13 12 11 42 42 H 0.96992 * 120.00175 * 264.79014 * 14 13 12 43 43 H 0.97004 * 119.99463 * 179.97438 * 18 17 15 44 44 H 1.08994 * 109.50020 * 178.74609 * 23 13 12 45 45 H 1.09002 * 109.52194 * 58.66571 * 23 13 12 46 46 H 1.08996 * 109.58346 * 246.20228 * 24 10 8 47 47 H 1.08994 * 109.58489 * 6.48279 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8849 0.0000 6 1 3.6458 3.4235 -0.8424 7 6 3.6747 3.5698 1.3067 8 6 5.5820 2.8867 -0.1233 9 8 6.2078 1.8668 0.0749 10 7 6.2298 4.0215 -0.4536 11 6 5.4809 5.2345 -0.8089 12 6 5.9713 5.7395 -2.1695 13 6 7.4899 5.9259 -2.1225 14 7 7.9590 6.4369 -3.4128 15 6 7.9293 7.7820 -3.6682 16 1 7.5605 8.4660 -2.9182 17 6 8.3732 8.2662 -4.8910 18 7 8.8232 7.4326 -5.8048 19 14 8.3334 10.1010 -5.2391 20 1 7.7880 10.8173 -4.0581 21 1 9.7105 10.5821 -5.5179 22 1 7.4695 10.3625 -6.4185 23 6 8.1646 4.5836 -1.8300 24 6 7.6982 4.0691 -0.4646 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9288 0.8909 34 1 4.0122 2.9695 2.1514 35 1 4.1331 4.5575 1.3566 36 1 2.5900 3.6705 1.3429 37 1 4.4172 5.0036 -0.8666 38 1 5.6477 6.0016 -0.0527 39 1 5.7198 5.0108 -2.9402 40 1 5.4926 6.6916 -2.3984 41 1 7.7422 6.6379 -1.3367 42 1 8.2906 5.8226 -4.0862 43 1 9.1331 7.7710 -6.6595 44 1 9.2465 4.7150 -1.8191 45 1 7.8933 3.8637 -2.6022 46 1 8.0478 4.7419 0.3184 47 1 8.0975 3.0696 -0.2925 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200349559.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:20 Heat of formation + Delta-G solvation = -75.370044 kcal Electronic energy + Delta-G solvation = -22803.213412 eV Core-core repulsion = 19598.111006 eV Total energy + Delta-G solvation = -3205.102405 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.41356 -38.91608 -37.23791 -36.15331 -34.48721 -33.64000 -32.01395 -30.99932 -29.41971 -26.88905 -25.94951 -24.47352 -24.30972 -22.87444 -21.83602 -21.15440 -19.77823 -19.05052 -18.23200 -16.94892 -16.69980 -16.63999 -16.14997 -15.50486 -15.44571 -15.20682 -14.92487 -14.85074 -14.63084 -14.22864 -13.98958 -13.76900 -13.45487 -13.29650 -13.09565 -13.01026 -12.86914 -12.66289 -12.52754 -12.26703 -12.15439 -12.09472 -12.01971 -11.85594 -11.79484 -11.67856 -11.48429 -11.32118 -11.30948 -10.93401 -10.58389 -9.65682 -9.00916 -7.93262 -5.22202 1.48579 1.49004 1.58944 1.62930 2.03281 2.56985 3.40012 3.47593 3.76578 3.80773 3.88554 3.97400 4.07720 4.17347 4.23272 4.26297 4.31190 4.35763 4.40227 4.51562 4.62310 4.65856 4.78727 4.81819 4.83997 4.86110 4.87273 4.94610 5.00742 5.03535 5.06230 5.06766 5.12468 5.24155 5.30887 5.31928 5.40040 5.49541 5.50020 5.54382 5.55670 5.63837 6.28447 6.45361 7.17741 7.34216 8.09898 8.32872 9.30794 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025284 B = 0.003132 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.144670 B = 8937.608426 C = 9374.711454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.114 4.114 4 C -0.096 4.096 5 C -0.107 4.107 6 H 0.109 0.891 7 C -0.138 4.138 8 C 0.512 3.488 9 O -0.589 6.589 10 N -0.608 5.608 11 C 0.114 3.886 12 C -0.142 4.142 13 C 0.173 3.827 14 N -0.740 5.740 15 C -0.232 4.232 16 H 0.081 0.919 17 C -0.081 4.081 18 N -0.974 5.974 19 Si 0.972 3.028 20 H -0.262 1.262 21 H -0.297 1.297 22 H -0.296 1.296 23 C -0.127 4.127 24 C 0.121 3.879 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.369 0.631 43 H 0.249 0.751 44 H 0.070 0.930 45 H 0.045 0.955 46 H 0.085 0.915 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.873 -9.289 16.132 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.151 4.151 4 C -0.134 4.134 5 C -0.128 4.128 6 H 0.127 0.873 7 C -0.196 4.196 8 C 0.302 3.698 9 O -0.470 6.470 10 N -0.340 5.340 11 C -0.008 4.008 12 C -0.183 4.183 13 C 0.065 3.935 14 N -0.379 5.379 15 C -0.364 4.364 16 H 0.099 0.901 17 C -0.273 4.273 18 N -0.625 5.625 19 Si 0.801 3.199 20 H -0.186 1.186 21 H -0.225 1.225 22 H -0.223 1.223 23 C -0.166 4.166 24 C -0.002 4.002 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.127 0.873 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.200 0.800 43 H 0.058 0.942 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.103 0.897 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.563 -9.608 16.288 24.491 hybrid contribution 0.782 0.574 -1.247 1.580 sum -14.781 -9.033 15.041 22.941 Atomic orbital electron populations 1.21763 0.95016 1.01865 1.02161 1.21538 0.96502 0.96845 1.01677 1.21640 0.93169 0.97197 1.03095 1.21378 0.96380 0.93882 1.01789 1.21412 0.89308 0.99688 1.02396 0.87301 1.21809 1.03542 1.00271 0.93948 1.21379 0.91589 0.81886 0.74942 1.90638 1.70180 1.33312 1.52889 1.48269 1.06926 1.11958 1.66812 1.21956 0.96947 0.85952 0.95943 1.22469 0.98338 1.00808 0.96656 1.20424 0.92292 0.93166 0.87599 1.42697 1.76064 1.04519 1.14577 1.19679 1.33252 0.84980 0.98444 0.90108 1.25578 1.02841 1.01862 0.96981 1.69843 1.50826 1.34828 1.06992 0.85091 0.76606 0.80400 0.77790 1.18571 1.22479 1.22344 1.22044 1.00663 0.96915 0.97014 1.21488 0.79930 1.02192 0.96588 0.92610 0.92628 0.92107 0.92882 0.92228 0.90226 0.91399 0.93630 0.92335 0.92719 0.91405 0.88903 0.87300 0.89373 0.93906 0.91252 0.93111 0.79981 0.94221 0.91141 0.93593 0.89704 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.01 16 2 C -0.13 -1.79 5.93 30.59 0.18 -1.61 16 3 C -0.11 -1.57 4.97 30.59 0.15 -1.42 16 4 C -0.10 -1.86 4.01 30.59 0.12 -1.74 16 5 C -0.11 -2.02 1.87 -11.54 -0.02 -2.04 16 6 H 0.11 1.76 6.58 -2.39 -0.02 1.75 16 7 C -0.14 -1.90 8.54 71.98 0.61 -1.29 16 8 C 0.51 13.96 6.89 87.66 0.60 14.57 16 9 O -0.59 -20.71 15.51 -3.05 -0.05 -20.76 16 10 N -0.61 -15.86 2.97 -818.92 -2.44 -18.29 16 11 C 0.11 2.55 5.37 86.36 0.46 3.01 16 12 C -0.14 -4.47 5.67 30.68 0.17 -4.30 16 13 C 0.17 6.47 2.73 45.03 0.12 6.59 16 14 N -0.74 -36.52 5.12 -322.74 -1.65 -38.18 16 15 C -0.23 -12.46 9.93 84.03 0.83 -11.62 16 16 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 17 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 18 N -0.97 -59.72 13.06 21.65 0.28 -59.44 16 19 Si 0.97 45.42 29.55 68.60 2.03 47.44 16 20 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 22 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 23 C -0.13 -4.26 5.55 30.67 0.17 -4.09 16 24 C 0.12 3.40 6.44 86.36 0.56 3.96 16 25 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.08 0.88 6.71 -2.38 -0.02 0.86 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.06 1.26 8.09 -2.39 -0.02 1.25 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.88 7.06 -2.39 -0.02 0.86 16 36 H 0.09 0.86 6.89 -2.39 -0.02 0.84 16 37 H 0.11 1.83 5.32 -2.39 -0.01 1.82 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 42 H 0.37 20.11 7.80 -92.71 -0.72 19.39 16 43 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 44 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.08 2.40 7.00 -2.39 -0.02 2.38 16 Total: -1.00 -68.22 364.49 3.53 -64.69 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.20 Total: 29.63 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 5.15 Total: -5.10 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -3.81 Total: -115.91 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.05 Total: -20.76 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -68.22 3.53 -64.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200349559.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.676 kcal (2) G-P(sol) polarization free energy of solvation -68.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds