Wall clock time and date at job start Tue Mar 31 2020 05:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46800 * 2 1 4 4 C 1.52997 * 109.46638 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46842 * 179.97438 * 4 3 2 6 6 H 1.09008 * 109.47180 * 55.00153 * 5 4 3 7 7 C 1.52993 * 109.47629 * 295.00192 * 5 4 3 8 8 C 1.50700 * 109.47406 * 174.99775 * 5 4 3 9 9 O 1.21287 * 119.99706 * 23.03559 * 8 5 4 10 10 N 1.34780 * 120.00486 * 203.03079 * 8 5 4 11 11 C 1.46921 * 120.62739 * 4.66156 * 10 8 5 12 12 C 1.52758 * 109.00983 * 233.58239 * 11 10 8 13 13 C 1.53040 * 109.38178 * 305.58986 * 12 11 10 14 14 N 1.46497 * 109.44850 * 181.24877 * 13 12 11 15 15 C 1.36940 * 119.99621 * 84.94011 * 14 13 12 16 16 H 1.07997 * 120.00201 * 0.02562 * 15 14 13 17 17 C 1.38816 * 120.00014 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99905 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00035 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47282 * 60.00336 * 19 17 15 21 21 H 1.48499 * 109.47097 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47286 * 299.99641 * 19 17 15 23 23 C 1.53048 * 109.53949 * 61.24083 * 13 12 11 24 24 C 1.46919 * 120.62969 * 184.93815 * 10 8 5 25 25 H 1.09005 * 109.46889 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46809 * 299.99608 * 1 2 3 27 27 H 1.08992 * 109.47000 * 60.00216 * 1 2 3 28 28 H 1.08998 * 109.46968 * 239.99865 * 2 1 3 29 29 H 1.09001 * 109.46959 * 119.99943 * 2 1 3 30 30 H 1.08998 * 109.47081 * 59.99799 * 3 2 1 31 31 H 1.09004 * 109.46888 * 300.00022 * 3 2 1 32 32 H 1.09004 * 109.47455 * 299.99621 * 4 3 2 33 33 H 1.08998 * 109.47592 * 60.00058 * 4 3 2 34 34 H 1.09002 * 109.47787 * 185.75245 * 7 5 4 35 35 H 1.09002 * 109.46803 * 305.75274 * 7 5 4 36 36 H 1.09005 * 109.47365 * 65.74825 * 7 5 4 37 37 H 1.08999 * 109.58619 * 353.42179 * 11 10 8 38 38 H 1.09003 * 109.58571 * 113.84055 * 11 10 8 39 39 H 1.09000 * 109.56658 * 185.55519 * 12 11 10 40 40 H 1.09001 * 109.35650 * 65.49784 * 12 11 10 41 41 H 1.08995 * 109.46381 * 301.21858 * 13 12 11 42 42 H 0.97005 * 120.00619 * 264.93923 * 14 13 12 43 43 H 0.96995 * 119.99675 * 180.02562 * 18 17 15 44 44 H 1.08991 * 109.49925 * 178.68129 * 23 13 12 45 45 H 1.09005 * 109.49641 * 58.58132 * 23 13 12 46 46 H 1.08997 * 109.59048 * 246.15863 * 24 10 8 47 47 H 1.09005 * 109.58940 * 6.44290 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8850 -0.0013 6 1 3.6457 3.4243 0.8406 7 6 3.6746 3.5688 -1.3086 8 6 5.5819 2.8870 0.1220 9 8 6.2188 1.9095 -0.2095 10 7 6.2175 3.9749 0.6004 11 6 5.4556 5.1272 1.1009 12 6 5.9354 6.3892 0.3863 13 6 7.4516 6.5193 0.5485 14 7 7.9093 7.7449 -0.1109 15 6 7.8658 8.9392 0.5577 16 1 7.4945 8.9776 1.5711 17 6 8.2990 10.1006 -0.0672 18 7 8.7520 10.0538 -1.3022 19 14 8.2403 11.7296 0.8449 20 1 9.0816 11.6440 2.0657 21 1 8.7552 12.8088 -0.0356 22 1 6.8383 12.0311 1.2301 23 6 8.1402 5.3101 -0.0886 24 6 7.6853 4.0335 0.6259 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9337 0.9286 0.8892 33 1 3.9330 0.9288 -0.8908 34 1 4.1236 4.5610 -1.3542 35 1 4.0224 2.9735 -2.1529 36 1 2.5891 3.6589 -1.3501 37 1 4.3943 4.9776 0.9024 38 1 5.6172 5.2341 2.1735 39 1 5.4470 7.2621 0.8195 40 1 5.6874 6.3211 -0.6729 41 1 7.7011 6.5625 1.6086 42 1 8.2432 7.7104 -1.0210 43 1 9.0550 10.8652 -1.7387 44 1 9.2209 5.4149 0.0066 45 1 7.8713 5.2522 -1.1434 46 1 8.0325 4.0495 1.6590 47 1 8.0948 3.1613 0.1162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200349561.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:25 Heat of formation + Delta-G solvation = -57.107543 kcal Electronic energy + Delta-G solvation = -22842.804779 eV Core-core repulsion = 19638.494295 eV Total energy + Delta-G solvation = -3204.310484 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.28045 -37.63099 -36.39292 -34.50044 -33.59849 -31.96480 -30.80084 -29.31741 -28.68415 -25.64977 -24.71352 -23.15845 -22.95619 -21.82647 -20.99741 -19.96413 -18.46826 -17.26435 -17.04559 -15.87838 -15.77646 -15.12412 -14.83396 -14.43861 -14.17543 -13.74195 -13.65717 -13.61165 -13.46313 -13.28400 -13.02953 -12.65899 -12.45998 -12.17890 -11.92166 -11.85307 -11.58256 -11.50564 -11.19962 -11.07074 -10.98713 -10.90521 -10.82813 -10.72598 -10.65463 -10.45884 -10.27856 -9.84464 -9.69402 -9.48380 -8.92182 -8.45865 -7.00209 -5.79691 -3.09048 2.73378 3.13457 3.41088 3.45734 3.46853 4.41028 4.54228 4.55583 4.68831 4.88226 4.90472 5.00757 5.02763 5.26543 5.27024 5.33630 5.34874 5.41924 5.45919 5.52659 5.53068 5.57149 5.66659 5.69242 5.72869 5.74499 5.77905 5.84294 5.95050 5.97917 5.99168 6.03974 6.17458 6.22161 6.24310 6.37660 6.39673 6.50428 6.63364 6.88783 7.02772 7.56889 7.65528 8.30032 8.38598 9.49638 10.07245 10.41911 11.42782 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029587 B = 0.003100 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.144630 B = 9031.395202 C = 9541.028309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.100 4.100 5 C -0.111 4.111 6 H 0.092 0.908 7 C -0.143 4.143 8 C 0.518 3.482 9 O -0.551 6.551 10 N -0.606 5.606 11 C 0.105 3.895 12 C -0.151 4.151 13 C 0.179 3.821 14 N -0.724 5.724 15 C -0.240 4.240 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.138 4.138 24 C 0.116 3.884 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.563 -16.869 3.600 21.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.138 4.138 5 C -0.132 4.132 6 H 0.110 0.890 7 C -0.201 4.201 8 C 0.307 3.693 9 O -0.429 6.429 10 N -0.339 5.339 11 C -0.018 4.018 12 C -0.192 4.192 13 C 0.069 3.931 14 N -0.364 5.364 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.177 4.177 24 C -0.007 4.007 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.217 0.783 43 H 0.066 0.934 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.204 -17.210 3.540 21.978 hybrid contribution 0.077 1.185 0.187 1.202 sum -13.127 -16.025 3.727 21.048 Atomic orbital electron populations 1.21781 0.96009 1.01450 1.01771 1.21528 0.95650 0.97015 1.02097 1.21683 0.95150 0.96803 1.02214 1.21436 0.94780 0.94330 1.03270 1.21347 0.92226 0.98939 1.00714 0.89003 1.21790 1.01873 1.00852 0.95567 1.20647 0.90148 0.82174 0.76374 1.90652 1.68407 1.33616 1.50254 1.48187 1.07235 1.16534 1.61903 1.21833 0.95575 0.85972 0.98466 1.22600 1.00733 0.95449 1.00440 1.20158 0.90552 0.86331 0.96063 1.42432 1.75885 1.02256 1.15871 1.19183 1.35710 0.85369 0.96901 0.91239 1.24756 1.01835 0.97910 0.96431 1.69654 1.48659 1.27700 1.12047 0.86276 0.77630 0.83703 0.78614 1.21272 1.21712 1.21278 1.22204 1.01110 0.94226 1.00208 1.21597 0.79137 0.99183 1.00803 0.92939 0.92808 0.92767 0.91997 0.92099 0.92023 0.91602 0.91783 0.90962 0.91712 0.91998 0.91349 0.90225 0.91587 0.90641 0.92209 0.93458 0.78267 0.93432 0.90604 0.91912 0.91731 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.63 16 2 C -0.13 -0.93 5.93 -26.73 -0.16 -1.09 16 3 C -0.12 -0.95 4.97 -26.73 -0.13 -1.09 16 4 C -0.10 -1.01 4.10 -26.73 -0.11 -1.12 16 5 C -0.11 -1.20 1.87 -91.78 -0.17 -1.37 16 6 H 0.09 0.85 6.39 -51.92 -0.33 0.52 16 7 C -0.14 -1.46 8.60 37.15 0.32 -1.14 16 8 C 0.52 7.45 6.82 -10.98 -0.07 7.37 16 9 O -0.55 -9.69 15.60 5.55 0.09 -9.60 16 10 N -0.61 -8.52 2.98 -173.03 -0.52 -9.03 16 11 C 0.10 1.34 6.04 -3.94 -0.02 1.31 16 12 C -0.15 -2.46 5.64 -26.83 -0.15 -2.61 16 13 C 0.18 3.39 2.73 -67.89 -0.19 3.20 16 14 N -0.72 -17.63 5.12 -53.38 -0.27 -17.90 16 15 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 16 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 19 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 C -0.14 -2.30 5.55 -26.60 -0.15 -2.44 16 24 C 0.12 1.69 6.42 -3.71 -0.02 1.67 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.50 6.69 -51.93 -0.35 0.15 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.81 8.04 -51.93 -0.42 0.40 16 34 H 0.06 0.72 7.74 -51.93 -0.40 0.32 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.56 6.85 -51.93 -0.36 0.20 16 37 H 0.08 0.84 5.18 -51.93 -0.27 0.57 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 42 H 0.38 10.08 7.80 -40.82 -0.32 9.76 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.09 1.32 7.03 -51.93 -0.37 0.96 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -30.85 365.58 -8.92 -39.77 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -8.69 Total: 6.42 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -0.74 Total: -5.02 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.06 Total: -54.06 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.85 -8.92 -39.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200349561.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.338 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds