Wall clock time and date at job start Tue Mar 31 2020 05:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46800 * 2 1 4 4 C 1.52997 * 109.46638 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46842 * 179.97438 * 4 3 2 6 6 H 1.09008 * 109.47180 * 55.00153 * 5 4 3 7 7 C 1.52993 * 109.47629 * 295.00192 * 5 4 3 8 8 C 1.50700 * 109.47406 * 174.99775 * 5 4 3 9 9 O 1.21287 * 119.99706 * 23.03559 * 8 5 4 10 10 N 1.34780 * 120.00486 * 203.03079 * 8 5 4 11 11 C 1.46921 * 120.62739 * 4.66156 * 10 8 5 12 12 C 1.52758 * 109.00983 * 233.58239 * 11 10 8 13 13 C 1.53040 * 109.38178 * 305.58986 * 12 11 10 14 14 N 1.46497 * 109.44850 * 181.24877 * 13 12 11 15 15 C 1.36940 * 119.99621 * 84.94011 * 14 13 12 16 16 H 1.07997 * 120.00201 * 0.02562 * 15 14 13 17 17 C 1.38816 * 120.00014 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99905 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00035 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47282 * 60.00336 * 19 17 15 21 21 H 1.48499 * 109.47097 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47286 * 299.99641 * 19 17 15 23 23 C 1.53048 * 109.53949 * 61.24083 * 13 12 11 24 24 C 1.46919 * 120.62969 * 184.93815 * 10 8 5 25 25 H 1.09005 * 109.46889 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46809 * 299.99608 * 1 2 3 27 27 H 1.08992 * 109.47000 * 60.00216 * 1 2 3 28 28 H 1.08998 * 109.46968 * 239.99865 * 2 1 3 29 29 H 1.09001 * 109.46959 * 119.99943 * 2 1 3 30 30 H 1.08998 * 109.47081 * 59.99799 * 3 2 1 31 31 H 1.09004 * 109.46888 * 300.00022 * 3 2 1 32 32 H 1.09004 * 109.47455 * 299.99621 * 4 3 2 33 33 H 1.08998 * 109.47592 * 60.00058 * 4 3 2 34 34 H 1.09002 * 109.47787 * 185.75245 * 7 5 4 35 35 H 1.09002 * 109.46803 * 305.75274 * 7 5 4 36 36 H 1.09005 * 109.47365 * 65.74825 * 7 5 4 37 37 H 1.08999 * 109.58619 * 353.42179 * 11 10 8 38 38 H 1.09003 * 109.58571 * 113.84055 * 11 10 8 39 39 H 1.09000 * 109.56658 * 185.55519 * 12 11 10 40 40 H 1.09001 * 109.35650 * 65.49784 * 12 11 10 41 41 H 1.08995 * 109.46381 * 301.21858 * 13 12 11 42 42 H 0.97005 * 120.00619 * 264.93923 * 14 13 12 43 43 H 0.96995 * 119.99675 * 180.02562 * 18 17 15 44 44 H 1.08991 * 109.49925 * 178.68129 * 23 13 12 45 45 H 1.09005 * 109.49641 * 58.58132 * 23 13 12 46 46 H 1.08997 * 109.59048 * 246.15863 * 24 10 8 47 47 H 1.09005 * 109.58940 * 6.44290 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8850 -0.0013 6 1 3.6457 3.4243 0.8406 7 6 3.6746 3.5688 -1.3086 8 6 5.5819 2.8870 0.1220 9 8 6.2188 1.9095 -0.2095 10 7 6.2175 3.9749 0.6004 11 6 5.4556 5.1272 1.1009 12 6 5.9354 6.3892 0.3863 13 6 7.4516 6.5193 0.5485 14 7 7.9093 7.7449 -0.1109 15 6 7.8658 8.9392 0.5577 16 1 7.4945 8.9776 1.5711 17 6 8.2990 10.1006 -0.0672 18 7 8.7520 10.0538 -1.3022 19 14 8.2403 11.7296 0.8449 20 1 9.0816 11.6440 2.0657 21 1 8.7552 12.8088 -0.0356 22 1 6.8383 12.0311 1.2301 23 6 8.1402 5.3101 -0.0886 24 6 7.6853 4.0335 0.6259 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9337 0.9286 0.8892 33 1 3.9330 0.9288 -0.8908 34 1 4.1236 4.5610 -1.3542 35 1 4.0224 2.9735 -2.1529 36 1 2.5891 3.6589 -1.3501 37 1 4.3943 4.9776 0.9024 38 1 5.6172 5.2341 2.1735 39 1 5.4470 7.2621 0.8195 40 1 5.6874 6.3211 -0.6729 41 1 7.7011 6.5625 1.6086 42 1 8.2432 7.7104 -1.0210 43 1 9.0550 10.8652 -1.7387 44 1 9.2209 5.4149 0.0066 45 1 7.8713 5.2522 -1.1434 46 1 8.0325 4.0495 1.6590 47 1 8.0948 3.1613 0.1162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200349561.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:24 Heat of formation + Delta-G solvation = -74.637041 kcal Electronic energy + Delta-G solvation = -22843.564916 eV Core-core repulsion = 19638.494295 eV Total energy + Delta-G solvation = -3205.070620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.42493 -38.92353 -37.24287 -36.14180 -34.45980 -33.65799 -32.02972 -30.99254 -29.45694 -26.90129 -25.94711 -24.48403 -24.30372 -22.86020 -21.81231 -21.22821 -19.67829 -19.00911 -18.32519 -16.93087 -16.70808 -16.55855 -16.20324 -15.50912 -15.46418 -15.19697 -15.09603 -14.82886 -14.43522 -14.22267 -14.04820 -13.76765 -13.48273 -13.30636 -13.11044 -13.02017 -12.79577 -12.64246 -12.57962 -12.23103 -12.21790 -12.16788 -12.00086 -11.85792 -11.79548 -11.67079 -11.47924 -11.31282 -11.30511 -10.90113 -10.57797 -9.66232 -9.00090 -7.92325 -5.21185 1.48827 1.51413 1.57325 1.61132 2.03410 2.57693 3.40448 3.46956 3.75849 3.82099 3.89933 3.95959 4.07622 4.17053 4.23337 4.27067 4.31121 4.35681 4.40018 4.52711 4.63411 4.64279 4.77144 4.81496 4.82926 4.83535 4.87086 4.94438 4.99868 5.03048 5.05622 5.07087 5.13553 5.24559 5.28707 5.31287 5.40432 5.48867 5.51309 5.55278 5.56198 5.64848 6.29057 6.44824 7.17012 7.35069 8.10913 8.33902 9.31162 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029587 B = 0.003100 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.144630 B = 9031.395202 C = 9541.028309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.095 4.095 5 C -0.105 4.105 6 H 0.117 0.883 7 C -0.140 4.140 8 C 0.513 3.487 9 O -0.588 6.588 10 N -0.608 5.608 11 C 0.112 3.888 12 C -0.140 4.140 13 C 0.173 3.827 14 N -0.739 5.739 15 C -0.235 4.235 16 H 0.080 0.920 17 C -0.079 4.079 18 N -0.973 5.973 19 Si 0.972 3.028 20 H -0.279 1.279 21 H -0.300 1.300 22 H -0.276 1.276 23 C -0.127 4.127 24 C 0.121 3.879 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.370 0.630 43 H 0.249 0.751 44 H 0.070 0.930 45 H 0.048 0.952 46 H 0.081 0.919 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.703 -17.188 5.334 23.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.152 4.152 4 C -0.133 4.133 5 C -0.126 4.126 6 H 0.135 0.865 7 C -0.198 4.198 8 C 0.303 3.697 9 O -0.469 6.469 10 N -0.340 5.340 11 C -0.010 4.010 12 C -0.181 4.181 13 C 0.065 3.935 14 N -0.378 5.378 15 C -0.367 4.367 16 H 0.097 0.903 17 C -0.271 4.271 18 N -0.624 5.624 19 Si 0.801 3.199 20 H -0.205 1.205 21 H -0.227 1.227 22 H -0.202 1.202 23 C -0.166 4.166 24 C -0.002 4.002 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.128 0.872 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.201 0.799 43 H 0.058 0.942 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.100 0.900 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.381 -17.559 5.321 23.941 hybrid contribution 0.763 1.189 -0.347 1.455 sum -14.617 -16.370 4.974 22.503 Atomic orbital electron populations 1.21767 0.95119 1.01851 1.02122 1.21536 0.96413 0.96768 1.01762 1.21645 0.93198 0.97248 1.03096 1.21383 0.96392 0.93556 1.02001 1.21412 0.89431 0.99836 1.01933 0.86509 1.21788 1.03474 0.99798 0.94709 1.21350 0.91656 0.81475 0.75240 1.90637 1.69533 1.35024 1.51699 1.48283 1.06964 1.16953 1.61751 1.21878 0.96874 0.83433 0.98817 1.22370 0.98265 0.97245 1.00197 1.20414 0.92428 0.85017 0.95653 1.42665 1.76289 1.03436 1.15386 1.19594 1.33666 0.86246 0.97149 0.90260 1.25566 1.02789 1.01399 0.97354 1.69823 1.50765 1.27997 1.13766 0.85234 0.77970 0.79400 0.77304 1.20481 1.22662 1.20153 1.22050 1.00644 0.94442 0.99451 1.21478 0.79975 0.97422 1.01296 0.92606 0.92328 0.92509 0.92589 0.92311 0.90796 0.90929 0.92608 0.92799 0.92702 0.93221 0.88704 0.87181 0.89712 0.91373 0.93459 0.93329 0.79908 0.94203 0.91152 0.93295 0.90042 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 71.98 0.71 -0.93 16 2 C -0.13 -1.66 5.93 30.60 0.18 -1.48 16 3 C -0.11 -1.50 4.97 30.59 0.15 -1.35 16 4 C -0.10 -1.76 4.10 30.59 0.13 -1.63 16 5 C -0.11 -2.01 1.87 -11.54 -0.02 -2.03 16 6 H 0.12 1.67 6.39 -2.38 -0.02 1.65 16 7 C -0.14 -2.54 8.60 71.98 0.62 -1.92 16 8 C 0.51 13.99 6.82 87.66 0.60 14.59 16 9 O -0.59 -20.50 15.60 -3.05 -0.05 -20.55 16 10 N -0.61 -15.94 2.98 -819.74 -2.44 -18.38 16 11 C 0.11 2.53 6.04 86.22 0.52 3.05 16 12 C -0.14 -4.35 5.64 30.53 0.17 -4.18 16 13 C 0.17 6.42 2.73 45.02 0.12 6.54 16 14 N -0.74 -36.22 5.12 -322.81 -1.65 -37.88 16 15 C -0.23 -12.59 9.93 84.03 0.83 -11.75 16 16 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 17 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 18 N -0.97 -59.28 13.06 21.65 0.28 -58.99 16 19 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 23 C -0.13 -4.19 5.55 30.68 0.17 -4.02 16 24 C 0.12 3.43 6.42 86.37 0.55 3.98 16 25 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.87 6.69 -2.39 -0.02 0.86 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.19 8.04 -2.39 -0.02 1.17 16 34 H 0.05 1.11 7.74 -2.39 -0.02 1.09 16 35 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 1.22 6.85 -2.38 -0.02 1.21 16 37 H 0.11 1.86 5.18 -2.39 -0.01 1.84 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 42 H 0.37 19.94 7.80 -92.70 -0.72 19.22 16 43 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 44 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 46 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.08 2.40 7.03 -2.38 -0.02 2.39 16 Total: -1.00 -67.18 365.58 3.58 -63.60 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.20 Total: 30.03 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 5.21 Total: -5.13 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -3.81 Total: -115.25 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.05 Total: -20.55 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -67.18 3.58 -63.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200349561.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.038 kcal (2) G-P(sol) polarization free energy of solvation -67.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds