Wall clock time and date at job start Tue Mar 31 2020 06:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47145 * 2 1 4 4 C 1.53003 * 109.47005 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47249 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00255 * 270.00343 * 5 4 3 7 7 C 1.50692 * 109.47086 * 269.99726 * 6 5 4 8 8 H 1.08003 * 120.00120 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99920 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00171 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 120.00156 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47288 * 89.99986 * 11 9 7 13 13 H 1.48500 * 109.47629 * 210.00017 * 11 9 7 14 14 H 1.48504 * 109.47399 * 330.00115 * 11 9 7 15 15 C 1.34774 * 119.99551 * 90.00367 * 5 4 3 16 16 O 1.21585 * 120.00115 * 179.97438 * 15 5 4 17 17 N 1.34777 * 120.00134 * 359.97438 * 15 5 4 18 18 C 1.46506 * 120.00033 * 179.97438 * 17 15 5 19 19 C 1.52997 * 109.47289 * 275.00400 * 18 17 15 20 20 C 1.52996 * 109.47131 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47518 * 59.99828 * 20 19 18 22 22 C 1.53005 * 109.46632 * 300.00318 * 21 20 19 23 23 C 1.52996 * 109.47571 * 60.00168 * 22 21 20 24 24 H 1.08999 * 109.47427 * 300.00326 * 1 2 3 25 25 H 1.09000 * 109.46721 * 60.00054 * 1 2 3 26 26 H 1.09001 * 109.47508 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46986 * 239.99505 * 2 1 3 28 28 H 1.09000 * 109.46721 * 119.99946 * 2 1 3 29 29 H 1.09003 * 109.47702 * 60.00105 * 3 2 1 30 30 H 1.09000 * 109.47267 * 299.99611 * 3 2 1 31 31 H 1.09007 * 109.46829 * 59.99980 * 4 3 2 32 32 H 1.09000 * 109.47208 * 300.00159 * 4 3 2 33 33 H 1.08994 * 109.46832 * 30.00329 * 6 5 4 34 34 H 1.09003 * 109.46516 * 149.99888 * 6 5 4 35 35 H 0.96996 * 120.00410 * 179.97438 * 10 9 7 36 36 H 0.97000 * 120.00155 * 0.02562 * 17 15 5 37 37 H 1.09001 * 109.47060 * 35.00669 * 18 17 15 38 38 H 1.09001 * 109.46832 * 299.99854 * 19 18 17 39 39 H 1.08996 * 109.46952 * 59.99873 * 19 18 17 40 40 H 1.09001 * 109.46997 * 299.99574 * 20 19 18 41 41 H 1.09004 * 109.47552 * 179.97438 * 20 19 18 42 42 H 1.08992 * 109.47399 * 180.02562 * 21 20 19 43 43 H 1.09001 * 109.47194 * 59.99866 * 21 20 19 44 44 H 1.09001 * 109.47420 * 299.99415 * 22 21 20 45 45 H 1.09004 * 109.46832 * 179.97438 * 22 21 20 46 46 H 1.08992 * 109.47346 * 180.02562 * 23 22 21 47 47 H 1.09001 * 109.47364 * 59.99212 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.3031 3.5135 -1.2690 7 6 5.7265 3.2765 -1.7033 8 1 6.3831 2.6720 -1.0951 9 6 6.1905 3.8313 -2.8771 10 7 7.4327 3.6241 -3.2564 11 14 5.0551 4.8774 -3.9286 12 1 5.1588 6.2976 -3.5071 13 1 5.4487 4.7546 -5.3552 14 1 3.6551 4.4119 -3.7595 15 6 4.2826 3.4595 1.1670 16 8 4.6884 4.6057 1.1666 17 7 4.0570 2.8250 2.3344 18 6 4.3013 3.5161 3.6029 19 6 5.7771 3.3792 3.9824 20 6 6.0320 4.1004 5.3074 21 6 5.1640 3.4773 6.4025 22 6 3.6881 3.6142 6.0230 23 6 3.4332 2.8929 4.6980 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9284 -0.8892 32 1 3.9330 0.9287 0.8908 33 1 3.6225 3.1291 -2.0286 34 1 4.1361 4.5828 -1.1392 35 1 7.7591 4.0141 -4.0824 36 1 3.7336 1.9105 2.3348 37 1 4.0499 4.5713 3.4961 38 1 6.0284 2.3240 4.0893 39 1 6.3955 3.8228 3.2020 40 1 5.7806 5.1557 5.2009 41 1 7.0834 4.0026 5.5780 42 1 5.3453 3.9914 7.3463 43 1 5.4154 2.4220 6.5090 44 1 3.4367 4.6694 5.9165 45 1 3.0697 3.1699 6.8029 46 1 2.3819 2.9908 4.4274 47 1 3.6846 1.8377 4.8044 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202611746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:38 Heat of formation + Delta-G solvation = -61.780549 kcal Electronic energy + Delta-G solvation = -23355.196052 eV Core-core repulsion = 20150.682931 eV Total energy + Delta-G solvation = -3204.513121 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.81866 -38.10198 -35.99301 -34.09076 -33.63031 -32.33779 -30.75960 -29.47103 -28.91237 -27.03536 -23.49299 -22.94209 -22.60921 -21.52062 -21.03446 -19.97842 -18.98627 -17.31715 -16.82843 -16.19400 -15.43767 -14.94140 -14.76892 -14.35916 -14.18512 -14.14931 -13.73188 -13.54331 -13.34667 -12.88118 -12.73709 -12.45692 -12.40766 -12.23261 -12.18115 -11.63759 -11.35219 -11.19749 -11.15521 -11.11468 -11.03734 -10.76842 -10.67211 -10.48393 -10.44297 -10.38180 -10.14995 -10.07927 -9.47596 -9.20008 -8.56872 -8.52040 -7.55689 -6.02308 -3.99854 3.31296 3.35886 3.40766 3.42829 3.99912 4.43862 4.46106 4.67854 4.74209 4.91297 4.99307 5.08988 5.14920 5.17470 5.27325 5.30775 5.38144 5.44047 5.50091 5.53131 5.60292 5.71424 5.73486 5.77337 5.83521 5.88164 5.96431 6.02798 6.04962 6.08155 6.11228 6.18330 6.24163 6.33382 6.41651 6.48034 6.52091 6.70258 6.97778 7.04908 7.40729 7.65031 7.76704 8.56032 8.72317 9.01986 9.40310 9.59853 11.11393 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012312 B = 0.005425 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.683163 B = 5160.148420 C = 6919.987223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.115 3.885 5 N -0.609 5.609 6 C 0.232 3.768 7 C -0.524 4.524 8 H 0.073 0.927 9 C 0.071 3.929 10 N -0.900 5.900 11 Si 0.876 3.124 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.266 1.266 15 C 0.704 3.296 16 O -0.587 6.587 17 N -0.753 5.753 18 C 0.166 3.834 19 C -0.132 4.132 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.114 4.114 23 C -0.125 4.125 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.028 0.972 34 H 0.035 0.965 35 H 0.263 0.737 36 H 0.389 0.611 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.686 -6.443 15.882 20.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.179 4.179 4 C -0.009 4.009 5 N -0.343 5.343 6 C 0.111 3.889 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.131 4.131 10 N -0.539 5.539 11 Si 0.703 3.297 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.191 1.191 15 C 0.405 3.595 16 O -0.464 6.464 17 N -0.410 5.410 18 C 0.060 3.940 19 C -0.170 4.170 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.152 4.152 23 C -0.163 4.163 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.224 0.776 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.248 -5.524 15.677 20.070 hybrid contribution -0.503 0.007 -0.715 0.875 sum -11.751 -5.517 14.961 19.809 Atomic orbital electron populations 1.21757 0.96095 1.01200 1.01751 1.21464 0.95651 0.96803 1.02087 1.22118 0.96586 0.96560 1.02617 1.21385 0.92668 0.84262 1.02616 1.47158 1.68128 1.13214 1.05837 1.19516 0.96994 0.93152 0.79216 1.21384 0.95513 1.32524 1.06877 0.90867 1.24848 0.94974 0.95869 0.97388 1.69904 1.15153 1.45260 1.23582 0.86858 0.81496 0.81672 0.79681 1.19959 1.21185 1.19091 1.15888 0.78632 0.84685 0.80257 1.90874 1.52357 1.17109 1.86054 1.45376 1.73826 1.17187 1.04631 1.20679 0.94075 0.97569 0.81636 1.21961 0.97145 1.00592 0.97350 1.21496 0.99430 1.00035 0.94509 1.21569 0.94981 1.00989 0.98235 1.21470 0.96560 1.00893 0.96325 1.21800 0.99754 1.00035 0.94711 0.92975 0.92782 0.93020 0.91694 0.92141 0.92202 0.91430 0.89756 0.92176 0.95416 0.94659 0.92685 0.77625 0.89793 0.92246 0.90880 0.91795 0.91983 0.92176 0.92075 0.91714 0.91889 0.91580 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.12 -1.26 5.93 -26.73 -0.16 -1.42 16 3 C -0.14 -1.83 5.54 -26.73 -0.15 -1.98 16 4 C 0.12 1.84 5.17 -4.04 -0.02 1.81 16 5 N -0.61 -12.84 2.46 -180.80 -0.44 -13.29 16 6 C 0.23 5.82 4.23 -5.20 -0.02 5.80 16 7 C -0.52 -15.37 9.94 -34.44 -0.34 -15.71 16 8 H 0.07 2.36 8.06 -52.48 -0.42 1.94 16 9 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 10 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 11 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 12 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 14 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 15 C 0.70 15.04 8.24 -86.92 -0.72 14.32 16 16 O -0.59 -15.20 15.58 5.29 0.08 -15.12 16 17 N -0.75 -11.96 4.94 -58.67 -0.29 -12.25 16 18 C 0.17 2.33 2.45 -67.93 -0.17 2.16 16 19 C -0.13 -1.84 5.49 -26.73 -0.15 -1.99 16 20 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 21 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 22 C -0.11 -1.02 5.92 -26.73 -0.16 -1.18 16 23 C -0.12 -1.27 5.39 -26.73 -0.14 -1.41 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.42 8.07 -51.92 -0.42 1.00 16 32 H 0.06 0.82 6.37 -51.93 -0.33 0.49 16 33 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 34 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 35 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 36 H 0.39 5.13 6.33 -40.82 -0.26 4.87 16 37 H 0.08 1.37 7.58 -51.93 -0.39 0.97 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -34.12 367.82 -9.98 -44.09 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.90 Total: 2.49 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -2.07 Total: -1.34 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.04 Total: -52.98 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.08 Total: -15.12 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.12 -9.98 -44.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202611746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.686 kcal (2) G-P(sol) polarization free energy of solvation -34.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds