Wall clock time and date at job start Tue Mar 31 2020 06:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47128 * 2 1 4 4 C 1.53005 * 109.46768 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47219 * 304.99635 * 4 3 2 6 6 C 1.52999 * 109.46777 * 65.00476 * 4 3 2 7 7 C 1.52999 * 109.46982 * 185.06981 * 6 4 3 8 8 C 1.50704 * 109.46585 * 184.99800 * 4 3 2 9 9 O 1.21283 * 120.00061 * 266.16034 * 8 4 3 10 10 N 1.34777 * 119.99659 * 86.16772 * 8 4 3 11 11 C 1.46919 * 120.63167 * 354.62800 * 10 8 4 12 12 C 1.53626 * 108.54463 * 126.36907 * 11 10 8 13 13 C 1.53040 * 109.24201 * 54.85685 * 12 11 10 14 14 N 1.46493 * 109.46551 * 178.49229 * 13 12 11 15 15 C 1.36943 * 120.00043 * 275.06845 * 14 13 12 16 16 H 1.08001 * 119.99479 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00236 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99994 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99959 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47149 * 89.99419 * 19 17 15 21 21 H 1.48494 * 109.47127 * 209.99884 * 19 17 15 22 22 H 1.48502 * 109.46756 * 329.99712 * 19 17 15 23 23 C 1.53043 * 109.53723 * 298.51444 * 13 12 11 24 24 C 1.46926 * 120.62936 * 174.91065 * 10 8 4 25 25 H 1.09006 * 109.46735 * 299.99932 * 1 2 3 26 26 H 1.08994 * 109.47199 * 59.99773 * 1 2 3 27 27 H 1.08995 * 109.47023 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46697 * 239.99838 * 2 1 3 29 29 H 1.09007 * 109.47017 * 120.00409 * 2 1 3 30 30 H 1.09000 * 109.47308 * 59.99958 * 3 2 1 31 31 H 1.09003 * 109.47035 * 300.00099 * 3 2 1 32 32 H 1.09005 * 109.47104 * 305.06009 * 6 4 3 33 33 H 1.08996 * 109.47799 * 65.06785 * 6 4 3 34 34 H 1.08991 * 109.47703 * 174.41858 * 7 6 4 35 35 H 1.09002 * 109.46919 * 294.41764 * 7 6 4 36 36 H 1.09007 * 109.47602 * 54.41362 * 7 6 4 37 37 H 1.09003 * 109.59053 * 246.20486 * 11 10 8 38 38 H 1.09004 * 109.59045 * 6.63123 * 11 10 8 39 39 H 1.08995 * 109.63763 * 294.86824 * 12 11 10 40 40 H 1.09001 * 109.43565 * 174.71979 * 12 11 10 41 41 H 1.09004 * 109.44889 * 58.52003 * 13 12 11 42 42 H 0.96994 * 120.00650 * 95.06153 * 14 13 12 43 43 H 0.97003 * 119.99799 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.49486 * 301.41500 * 23 13 12 45 45 H 1.09004 * 109.49935 * 181.31524 * 23 13 12 46 46 H 1.09010 * 109.58573 * 353.36847 * 24 10 8 47 47 H 1.08995 * 109.58797 * 113.65449 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9331 0.8531 0.8427 6 6 4.0805 0.8326 -1.3065 7 6 5.6052 0.7162 -1.2537 8 6 4.0724 2.8579 0.1244 9 8 4.3412 3.4952 -0.8718 10 7 4.2229 3.4153 1.3422 11 6 3.7920 2.7004 2.5512 12 6 4.9740 2.6402 3.5307 13 6 5.4875 4.0585 3.7891 14 7 6.5918 4.0102 4.7505 15 6 6.3296 3.9999 6.0946 16 1 5.3086 4.0278 6.4457 17 6 7.3759 3.9536 7.0056 18 7 7.1239 3.9442 8.2973 19 14 9.1418 3.9061 6.3981 20 1 9.6542 5.2927 6.2570 21 1 9.9810 3.1651 7.3736 22 1 9.1938 3.2227 5.0807 23 6 5.9809 4.6714 2.4764 24 6 4.8154 4.7522 1.4855 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.6450 -0.1577 -1.4399 33 1 3.7937 1.4713 -2.1418 34 1 5.9606 0.1923 -2.1409 35 1 6.0447 1.7131 -1.2200 36 1 5.8966 0.1604 -0.3624 37 1 2.9586 3.2309 3.0120 38 1 3.4827 1.6891 2.2871 39 1 5.7739 2.0361 3.1028 40 1 4.6444 2.1960 4.4699 41 1 4.6801 4.6688 4.1938 42 1 7.5087 3.9855 4.4352 43 1 7.8550 3.9115 8.9339 44 1 6.7712 4.0480 2.0583 45 1 6.3680 5.6727 2.6651 46 1 5.1817 5.0951 0.5177 47 1 4.0632 5.4472 1.8587 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203100250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:59 Heat of formation + Delta-G solvation = -50.997916 kcal Electronic energy + Delta-G solvation = -23399.703548 eV Core-core repulsion = 20195.657998 eV Total energy + Delta-G solvation = -3204.045551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.43157 -37.77209 -36.31061 -34.63586 -33.17044 -32.09859 -30.99154 -29.90442 -29.11001 -25.52248 -24.34639 -23.25246 -22.78153 -22.00062 -21.07181 -19.98751 -18.72714 -17.66719 -17.23544 -15.79722 -15.50780 -15.23781 -14.88713 -14.43200 -14.25453 -14.02450 -13.78129 -13.46132 -13.42006 -13.32372 -12.96899 -12.75597 -12.39747 -12.23367 -12.09920 -11.90508 -11.84768 -11.49539 -11.32494 -11.11003 -11.03582 -10.92951 -10.91829 -10.82627 -10.59106 -10.55841 -10.27003 -9.91039 -9.62477 -9.52033 -8.95855 -8.52069 -7.31880 -5.81147 -3.16999 2.68769 3.07995 3.34947 3.38323 3.43070 4.36207 4.52309 4.55707 4.65918 4.84719 4.91177 4.95965 5.06871 5.14671 5.17918 5.26490 5.31200 5.34465 5.43879 5.47389 5.52791 5.56055 5.58235 5.62085 5.65319 5.68928 5.83650 5.86662 5.90692 5.93801 5.98151 6.05665 6.09187 6.14699 6.15937 6.21794 6.27603 6.36728 6.54364 6.78552 6.91432 7.51167 7.94518 8.25916 8.38028 9.16271 9.89151 10.08912 11.37078 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.003940 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.611365 B = 7104.831526 C = 7500.783117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.109 4.109 4 C -0.110 4.110 5 H 0.094 0.906 6 C -0.107 4.107 7 C -0.155 4.155 8 C 0.521 3.479 9 O -0.549 6.549 10 N -0.607 5.607 11 C 0.105 3.895 12 C -0.151 4.151 13 C 0.184 3.816 14 N -0.749 5.749 15 C -0.245 4.245 16 H 0.090 0.910 17 C 0.006 3.994 18 N -0.933 5.933 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.278 1.278 23 C -0.142 4.142 24 C 0.116 3.884 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.361 0.639 43 H 0.260 0.740 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.351 -7.048 -18.235 22.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.147 4.147 4 C -0.131 4.131 5 H 0.112 0.888 6 C -0.144 4.144 7 C -0.213 4.213 8 C 0.310 3.690 9 O -0.427 6.427 10 N -0.340 5.340 11 C -0.019 4.019 12 C -0.192 4.192 13 C 0.074 3.926 14 N -0.390 5.390 15 C -0.374 4.374 16 H 0.108 0.892 17 C -0.190 4.190 18 N -0.581 5.581 19 Si 0.714 3.286 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.181 4.181 24 C -0.006 4.006 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.193 0.807 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.105 0.895 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.303 -6.681 -18.498 22.203 hybrid contribution 1.403 -0.109 -0.029 1.407 sum -8.900 -6.790 -18.527 21.646 Atomic orbital electron populations 1.21772 0.95730 1.01620 1.01913 1.21588 0.95926 0.96248 1.02430 1.21565 0.92464 0.97744 1.02958 1.21485 0.97092 0.93785 1.00779 0.88802 1.21441 0.96141 1.00534 0.96322 1.21808 0.95816 1.02264 1.01386 1.20586 0.77246 0.88573 0.82642 1.90644 1.51549 1.64069 1.36458 1.48203 1.61046 1.18433 1.06313 1.22014 0.97885 0.96786 0.85180 1.22716 0.96681 1.01268 0.98557 1.20135 0.91401 0.93016 0.88042 1.42804 1.02960 1.90134 1.03138 1.19066 0.94940 1.43096 0.80344 0.89176 1.24668 0.97365 1.01945 0.95059 1.69699 1.31045 1.57377 0.99978 0.86563 0.86461 0.77801 0.77761 1.21069 1.21749 1.20381 1.22244 0.97617 1.02112 0.96137 1.21567 0.95377 0.83239 1.00465 0.92621 0.92791 0.92724 0.91541 0.91695 0.91365 0.91263 0.91208 0.90852 0.92724 0.92242 0.92933 0.91263 0.90083 0.92301 0.90228 0.92531 0.80661 0.93034 0.92025 0.90524 0.89460 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.12 -0.91 5.69 -26.73 -0.15 -1.06 16 3 C -0.11 -0.97 4.46 -26.73 -0.12 -1.09 16 4 C -0.11 -1.15 1.34 -91.77 -0.12 -1.27 16 5 H 0.09 0.92 6.43 -51.93 -0.33 0.59 16 6 C -0.11 -1.07 4.96 -26.73 -0.13 -1.20 16 7 C -0.16 -1.67 9.62 37.16 0.36 -1.31 16 8 C 0.52 7.12 6.09 -10.98 -0.07 7.05 16 9 O -0.55 -9.17 14.78 5.55 0.08 -9.08 16 10 N -0.61 -8.12 2.97 -172.50 -0.51 -8.63 16 11 C 0.10 1.29 5.91 -3.49 -0.02 1.27 16 12 C -0.15 -2.38 5.67 -26.39 -0.15 -2.53 16 13 C 0.18 3.32 2.73 -67.89 -0.19 3.13 16 14 N -0.75 -17.09 4.93 -53.39 -0.26 -17.35 16 15 C -0.24 -6.68 10.41 -15.06 -0.16 -6.83 16 16 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 17 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 18 N -0.93 -28.84 13.97 55.49 0.78 -28.07 16 19 Si 0.88 21.87 27.74 -169.99 -4.71 17.16 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.28 -6.50 6.52 56.52 0.37 -6.14 16 23 C -0.14 -2.19 5.55 -26.61 -0.15 -2.34 16 24 C 0.12 1.61 6.42 -3.71 -0.02 1.58 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.46 6.46 -51.93 -0.34 0.12 16 29 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.07 0.61 7.53 -51.93 -0.39 0.22 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.56 6.34 -51.93 -0.33 0.24 16 33 H 0.07 0.83 7.68 -51.93 -0.40 0.43 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.77 7.07 -51.93 -0.37 0.41 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.83 5.18 -51.93 -0.27 0.56 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 41 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 42 H 0.36 8.24 5.66 -40.82 -0.23 8.01 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 46 H 0.09 1.25 7.04 -51.92 -0.37 0.89 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 359.05 15.07 5.41 5.41 Total: -1.00 -31.55 359.05 -8.40 -39.95 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -8.53 Total: 5.82 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -0.65 Total: -5.21 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.00 Total: -54.05 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.08 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.16 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.55 -8.40 -39.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203100250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.047 kcal (2) G-P(sol) polarization free energy of solvation -31.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds