Wall clock time and date at job start Tue Mar 31 2020 06:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47041 * 2 1 4 4 C 1.52996 * 109.47041 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47462 * 304.99281 * 4 3 2 6 6 C 1.52996 * 109.47643 * 64.99974 * 4 3 2 7 7 C 1.50708 * 109.47029 * 185.00260 * 4 3 2 8 8 O 1.21286 * 119.99553 * 344.67219 * 7 4 3 9 9 N 1.34779 * 120.00297 * 164.68098 * 7 4 3 10 10 C 1.46923 * 120.62849 * 354.71717 * 9 7 4 11 11 C 1.53188 * 108.89417 * 233.51709 * 10 9 7 12 12 C 1.53073 * 109.29356 * 305.57806 * 11 10 9 13 13 C 1.53002 * 109.45360 * 181.24220 * 12 11 10 14 14 N 1.46491 * 109.46972 * 64.79193 * 13 12 11 15 15 C 1.36943 * 119.99763 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00108 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99863 * 179.97438 * 15 14 13 18 18 N 1.31627 * 120.00008 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00164 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46900 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47135 * 119.99656 * 19 17 15 22 22 H 1.48500 * 109.47394 * 240.00153 * 19 17 15 23 23 C 1.53047 * 109.65894 * 61.15237 * 12 11 10 24 24 C 1.46925 * 120.63086 * 174.69411 * 9 7 4 25 25 H 1.08993 * 109.47418 * 299.99810 * 1 2 3 26 26 H 1.09004 * 109.46996 * 60.00506 * 1 2 3 27 27 H 1.09003 * 109.47191 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47198 * 239.99785 * 2 1 3 29 29 H 1.08999 * 109.47249 * 119.99896 * 2 1 3 30 30 H 1.09004 * 109.47301 * 59.99848 * 3 2 1 31 31 H 1.08999 * 109.47014 * 300.00040 * 3 2 1 32 32 H 1.08996 * 109.47047 * 53.59210 * 6 4 3 33 33 H 1.08997 * 109.47301 * 173.59441 * 6 4 3 34 34 H 1.08998 * 109.46778 * 293.59578 * 6 4 3 35 35 H 1.09002 * 109.58859 * 353.37733 * 10 9 7 36 36 H 1.09000 * 109.58788 * 113.65760 * 10 9 7 37 37 H 1.09002 * 109.49722 * 65.38679 * 11 10 9 38 38 H 1.09002 * 109.50226 * 185.48510 * 11 10 9 39 39 H 1.09000 * 109.34938 * 301.12720 * 12 11 10 40 40 H 1.09008 * 109.47105 * 184.79174 * 13 12 11 41 41 H 1.08997 * 109.46951 * 304.78463 * 13 12 11 42 42 H 0.97002 * 120.00751 * 359.97438 * 14 13 12 43 43 H 0.97008 * 119.99834 * 180.02562 * 18 17 15 44 44 H 1.08994 * 109.50020 * 178.74609 * 23 12 11 45 45 H 1.09002 * 109.52194 * 58.66571 * 23 12 11 46 46 H 1.08996 * 109.58346 * 246.20228 * 24 9 7 47 47 H 1.08994 * 109.58489 * 6.48279 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9329 0.8533 0.8428 6 6 4.0806 0.8327 -1.3063 7 6 4.0722 2.8580 0.1245 8 8 3.3192 3.7881 -0.0732 9 7 5.3580 3.0904 0.4549 10 6 6.2521 1.9798 0.8098 11 6 6.8916 2.2733 2.1706 12 6 7.5735 3.6429 2.1241 13 6 8.2401 3.9262 3.4718 14 7 9.3174 2.9593 3.6966 15 6 10.0602 3.0168 4.8456 16 1 9.8521 3.7752 5.5859 17 6 11.0807 2.1003 5.0589 18 7 11.3340 1.1757 4.1569 19 14 12.0945 2.1790 6.6259 20 1 11.6129 3.3010 7.4711 21 1 11.9534 0.9024 7.3714 22 1 13.5226 2.3958 6.2812 23 6 6.5329 4.7265 1.8321 24 6 5.8924 4.4590 0.4666 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.6270 1.3515 -2.1508 33 1 5.1645 0.9357 -1.3562 34 1 3.8139 -0.2235 -1.3430 35 1 5.6798 1.0539 0.8671 36 1 7.0309 1.8818 0.0536 37 1 6.1208 2.2787 2.9412 38 1 7.6297 1.5044 2.3991 39 1 8.3290 3.6438 1.3383 40 1 8.6524 4.9353 3.4683 41 1 7.5011 3.8386 4.2682 42 1 9.5041 2.2779 3.0320 43 1 12.0469 0.5349 4.3062 44 1 7.0174 5.7028 1.8217 45 1 5.7637 4.7104 2.6043 46 1 6.6433 4.5646 -0.3164 47 1 5.0831 5.1686 0.2948 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204825503.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:10 Heat of formation + Delta-G solvation = -56.991024 kcal Electronic energy + Delta-G solvation = -22854.591418 eV Core-core repulsion = 19650.285987 eV Total energy + Delta-G solvation = -3204.305431 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.43341 -37.91912 -36.10552 -34.93886 -33.05142 -32.15433 -30.84059 -30.28944 -26.88327 -26.79056 -24.55173 -23.32879 -23.14448 -21.76472 -20.91203 -19.93595 -18.74618 -17.37135 -16.88868 -15.95462 -15.74188 -15.13307 -14.76321 -14.43460 -14.16701 -14.03883 -13.83016 -13.70555 -13.52708 -13.12728 -12.69990 -12.61758 -12.44794 -12.38188 -12.26677 -12.09956 -11.77389 -11.44184 -11.23793 -11.13534 -11.00424 -10.93091 -10.86314 -10.74145 -10.39927 -10.31265 -10.26453 -9.97075 -9.65710 -9.58578 -8.88534 -8.58190 -6.92250 -5.78227 -3.06121 2.62308 2.99090 3.42217 3.48262 3.50204 4.34243 4.52353 4.58066 4.68472 4.81829 4.92942 4.98066 5.04900 5.07057 5.11473 5.19944 5.28015 5.38282 5.43929 5.51222 5.55399 5.56957 5.61204 5.64406 5.66377 5.73241 5.82663 5.86735 5.92129 5.96711 5.99545 6.08440 6.11599 6.17679 6.19783 6.28672 6.45710 6.48347 6.64604 6.80760 6.91979 7.42412 7.69954 8.17642 8.41319 9.52554 10.10687 10.45451 11.44852 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024429 B = 0.003168 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.905926 B = 8836.509039 C = 9410.225002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.113 4.113 5 H 0.096 0.904 6 C -0.143 4.143 7 C 0.519 3.481 8 O -0.549 6.549 9 N -0.608 5.608 10 C 0.104 3.896 11 C -0.125 4.125 12 C -0.093 4.093 13 C 0.158 3.842 14 N -0.732 5.732 15 C -0.237 4.237 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.125 4.125 24 C 0.112 3.888 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.199 -1.236 -11.432 20.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.137 4.137 4 C -0.134 4.134 5 H 0.114 0.886 6 C -0.201 4.201 7 C 0.307 3.693 8 O -0.427 6.427 9 N -0.341 5.341 10 C -0.019 4.019 11 C -0.164 4.164 12 C -0.112 4.112 13 C 0.030 3.970 14 N -0.376 5.376 15 C -0.368 4.368 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.164 4.164 24 C -0.010 4.010 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.531 -0.675 -11.371 20.907 hybrid contribution 0.895 -0.263 0.781 1.217 sum -16.636 -0.938 -10.591 19.743 Atomic orbital electron populations 1.21759 0.95827 1.01454 1.01917 1.21596 0.95960 0.96658 1.02159 1.21440 0.92305 0.96648 1.03354 1.21367 0.97662 0.93702 1.00692 0.88648 1.21802 1.01491 1.01156 0.95622 1.20675 0.81271 0.91442 0.75872 1.90656 1.55221 1.45802 1.51060 1.48171 1.10316 1.08238 1.67362 1.21927 0.93355 0.88923 0.97647 1.21938 1.00331 0.98675 0.95423 1.21304 0.96533 0.93952 0.99453 1.20670 0.90382 0.93194 0.92715 1.42384 1.36958 1.35695 1.22605 1.19285 1.09811 1.11433 0.96281 0.91222 1.24728 0.99630 0.98279 0.98456 1.69666 1.33933 1.19868 1.34877 0.86125 0.80089 0.77184 0.82857 1.20596 1.21888 1.21885 1.21897 0.98577 0.99368 0.96549 1.21607 0.98605 0.83223 0.97609 0.92722 0.92762 0.92826 0.91726 0.91935 0.91546 0.91133 0.92084 0.91940 0.91216 0.89796 0.91188 0.91830 0.89297 0.91025 0.96377 0.96446 0.78285 0.93606 0.90726 0.91636 0.91656 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.13 -0.97 5.69 -26.73 -0.15 -1.12 16 3 C -0.10 -0.96 4.01 -26.73 -0.11 -1.07 16 4 C -0.11 -1.12 1.87 -91.77 -0.17 -1.29 16 5 H 0.10 0.87 6.58 -51.93 -0.34 0.52 16 6 C -0.14 -1.18 8.54 37.16 0.32 -0.87 16 7 C 0.52 6.85 6.89 -10.98 -0.08 6.78 16 8 O -0.55 -9.04 15.51 5.55 0.09 -8.95 16 9 N -0.61 -7.63 2.97 -172.77 -0.51 -8.14 16 10 C 0.10 1.20 5.37 -3.71 -0.02 1.18 16 11 C -0.13 -1.81 5.25 -26.60 -0.14 -1.95 16 12 C -0.09 -1.44 2.18 -90.56 -0.20 -1.64 16 13 C 0.16 3.13 5.65 -4.05 -0.02 3.10 16 14 N -0.73 -18.15 5.32 -59.91 -0.32 -18.47 16 15 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 18 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 19 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 C -0.13 -1.66 5.37 -26.61 -0.14 -1.80 16 24 C 0.11 1.40 6.44 -3.71 -0.02 1.38 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.45 6.71 -51.93 -0.35 0.10 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.52 7.06 -51.93 -0.37 0.15 16 34 H 0.07 0.47 6.89 -51.93 -0.36 0.11 16 35 H 0.08 0.82 5.32 -51.93 -0.28 0.54 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.09 1.46 7.15 -51.93 -0.37 1.09 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.38 9.82 6.84 -40.82 -0.28 9.54 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.98 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.09 1.18 7.00 -51.93 -0.36 0.81 16 LS Contribution 362.16 15.07 5.46 5.46 Total: -1.00 -31.61 362.16 -8.79 -40.40 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -8.59 Total: 4.81 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -0.61 Total: -5.30 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.11 Total: -53.71 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.61 -8.79 -40.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204825503.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.589 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds