Wall clock time and date at job start Tue Mar 31 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46638 * 2 1 4 4 C 1.53000 * 109.46842 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.47180 * 55.00153 * 4 3 2 6 6 C 1.52993 * 109.47629 * 295.00192 * 4 3 2 7 7 C 1.50700 * 109.47406 * 174.99775 * 4 3 2 8 8 O 1.21287 * 119.99706 * 23.03559 * 7 4 3 9 9 N 1.34780 * 120.00486 * 203.03079 * 7 4 3 10 10 C 1.46921 * 120.62739 * 4.66156 * 9 7 4 11 11 C 1.52758 * 109.00983 * 233.58239 * 10 9 7 12 12 C 1.53040 * 109.38178 * 305.58986 * 11 10 9 13 13 C 1.53002 * 109.44912 * 181.24844 * 12 11 10 14 14 N 1.46500 * 109.46773 * 64.94266 * 13 12 11 15 15 C 1.36936 * 120.00348 * 180.02562 * 14 13 12 16 16 H 1.08008 * 119.99501 * 359.97438 * 15 14 13 17 17 C 1.38806 * 120.00522 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99983 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00188 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47083 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47144 * 120.00252 * 19 17 15 22 22 H 1.48501 * 109.47320 * 240.00378 * 19 17 15 23 23 C 1.53048 * 109.53949 * 61.24083 * 12 11 10 24 24 C 1.46919 * 120.62969 * 184.93815 * 9 7 4 25 25 H 1.09001 * 109.47318 * 60.00331 * 1 2 3 26 26 H 1.09004 * 109.46946 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47471 * 299.99880 * 1 2 3 28 28 H 1.08998 * 109.47081 * 239.99746 * 2 1 3 29 29 H 1.09004 * 109.46888 * 119.99969 * 2 1 3 30 30 H 1.09004 * 109.47455 * 299.99621 * 3 2 1 31 31 H 1.08998 * 109.47592 * 60.00058 * 3 2 1 32 32 H 1.09002 * 109.47787 * 185.75245 * 6 4 3 33 33 H 1.09002 * 109.46803 * 305.75274 * 6 4 3 34 34 H 1.09005 * 109.47365 * 65.74825 * 6 4 3 35 35 H 1.08999 * 109.58619 * 353.42179 * 10 9 7 36 36 H 1.09003 * 109.58571 * 113.84055 * 10 9 7 37 37 H 1.09000 * 109.56658 * 185.55519 * 11 10 9 38 38 H 1.09001 * 109.35650 * 65.49784 * 11 10 9 39 39 H 1.08995 * 109.46381 * 301.21858 * 12 11 10 40 40 H 1.08999 * 109.47187 * 184.93817 * 13 12 11 41 41 H 1.08997 * 109.47046 * 304.94395 * 13 12 11 42 42 H 0.97005 * 120.00273 * 359.97438 * 14 13 12 43 43 H 0.96997 * 120.00232 * 180.02562 * 18 17 15 44 44 H 1.08991 * 109.49925 * 178.68129 * 23 12 11 45 45 H 1.08997 * 109.52525 * 58.59906 * 23 12 11 46 46 H 1.08997 * 109.59048 * 246.15863 * 24 9 7 47 47 H 1.09005 * 109.58940 * 6.44290 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9336 0.8530 -0.8410 6 6 4.0795 0.8332 1.3082 7 6 4.0723 2.8579 -0.1232 8 8 3.3629 3.7844 0.2078 9 7 5.3099 3.0944 -0.6018 10 6 6.1424 1.9918 -1.1017 11 6 7.4921 2.0239 -0.3872 12 6 8.1202 3.4100 -0.5500 13 6 9.4862 3.4344 0.1386 14 7 10.3952 2.5125 -0.5470 15 6 11.6828 2.3651 -0.1049 16 1 12.0283 2.9289 0.7491 17 6 12.5439 1.4912 -0.7541 18 7 12.1229 0.8045 -1.7952 19 14 14.3006 1.2907 -0.1514 20 1 14.5232 2.1682 1.0258 21 1 14.5327 -0.1241 0.2355 22 1 15.2422 1.6682 -1.2358 23 6 7.2095 4.4625 0.0866 24 6 5.8543 4.4587 -0.6279 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 5.1646 0.9258 1.3537 33 1 3.6341 1.3598 2.1523 34 1 3.8027 -0.2203 1.3502 35 1 5.6476 1.0412 -0.9028 36 1 6.2971 2.1081 -2.1745 37 1 8.1523 1.2723 -0.8201 38 1 7.3452 1.8132 0.6721 39 1 8.2440 3.6304 -1.6102 40 1 9.8950 4.4441 0.0992 41 1 9.3743 3.1280 1.1786 42 1 10.0847 2.0059 -1.3138 43 1 12.7245 0.1936 -2.2487 44 1 7.6685 5.4465 -0.0091 45 1 7.0653 4.2294 1.1415 46 1 5.9851 4.7804 -1.6611 47 1 5.1685 5.1357 -0.1185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204825504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:14 Heat of formation + Delta-G solvation = -56.775581 kcal Electronic energy + Delta-G solvation = -22903.537537 eV Core-core repulsion = 19699.241447 eV Total energy + Delta-G solvation = -3204.296089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.44009 -37.93053 -36.11365 -34.93359 -33.01358 -32.18613 -30.85589 -30.30603 -26.86682 -26.81269 -24.54393 -23.36890 -23.10130 -21.77624 -20.91386 -20.00739 -18.60435 -17.42125 -16.94366 -15.95735 -15.63273 -15.20975 -14.79279 -14.38550 -14.26226 -13.99552 -13.78237 -13.74381 -13.56802 -12.96286 -12.83216 -12.59072 -12.46969 -12.41529 -12.15746 -12.11145 -11.81181 -11.41712 -11.23331 -11.13740 -11.01860 -10.92667 -10.86528 -10.75389 -10.41059 -10.31038 -10.26223 -9.97620 -9.66252 -9.57245 -8.88920 -8.58706 -6.92646 -5.78483 -3.06425 2.61713 2.99565 3.41951 3.48005 3.49939 4.34282 4.53050 4.57694 4.69707 4.81729 4.93172 4.97972 5.04805 5.08458 5.10701 5.19778 5.29118 5.37906 5.46215 5.52622 5.54950 5.57844 5.62324 5.64050 5.67192 5.73608 5.81643 5.88643 5.91586 5.96870 5.99284 6.08580 6.12168 6.16264 6.19491 6.27963 6.45301 6.47501 6.64386 6.80337 6.91341 7.42343 7.69563 8.17606 8.41015 9.52263 10.10358 10.45108 11.44605 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026781 B = 0.003173 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.275290 B = 8822.863716 C = 9486.424246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.112 4.112 5 H 0.093 0.907 6 C -0.143 4.143 7 C 0.519 3.481 8 O -0.550 6.550 9 N -0.608 5.608 10 C 0.103 3.897 11 C -0.125 4.125 12 C -0.094 4.094 13 C 0.158 3.842 14 N -0.732 5.732 15 C -0.237 4.237 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.125 4.125 24 C 0.112 3.888 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.260 0.028 2.311 20.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.138 4.138 4 C -0.134 4.134 5 H 0.111 0.889 6 C -0.201 4.201 7 C 0.308 3.692 8 O -0.428 6.428 9 N -0.341 5.341 10 C -0.020 4.020 11 C -0.163 4.163 12 C -0.113 4.113 13 C 0.031 3.969 14 N -0.376 5.376 15 C -0.368 4.368 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.164 4.164 24 C -0.010 4.010 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.476 0.554 2.584 20.646 hybrid contribution 1.147 -0.358 -0.050 1.203 sum -19.329 0.196 2.533 19.495 Atomic orbital electron populations 1.21762 0.95835 1.01463 1.01894 1.21595 0.95927 0.96633 1.02209 1.21454 0.92367 0.96726 1.03270 1.21370 0.97554 0.93630 1.00812 0.88874 1.21792 1.01717 1.01068 0.95503 1.20678 0.80928 0.91379 0.76245 1.90655 1.55923 1.46023 1.50172 1.48184 1.14980 1.08797 1.62115 1.21852 0.92037 0.89408 0.98690 1.21856 0.94838 0.98656 1.00982 1.21302 0.95335 0.94057 1.00557 1.20669 0.87968 0.93641 0.94670 1.42384 1.09562 1.49478 1.36212 1.19281 0.87818 1.19397 1.10324 0.91226 1.24725 0.98403 0.99725 0.98227 1.69659 1.35326 1.30740 1.22607 0.86128 0.84962 0.77386 0.77795 1.20598 1.21887 1.21886 1.21909 0.94465 0.99947 1.00095 1.21604 0.95268 0.83245 1.00890 0.92793 0.92814 0.92715 0.91984 0.91621 0.91763 0.90977 0.91779 0.92004 0.91202 0.89703 0.91186 0.89306 0.91812 0.90994 0.96385 0.96446 0.78284 0.93598 0.90695 0.91666 0.91660 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.13 -0.95 5.69 -26.73 -0.15 -1.10 16 3 C -0.10 -0.96 4.10 -26.73 -0.11 -1.07 16 4 C -0.11 -1.13 1.87 -91.78 -0.17 -1.30 16 5 H 0.09 0.81 6.39 -51.92 -0.33 0.48 16 6 C -0.14 -1.32 8.60 37.15 0.32 -1.00 16 7 C 0.52 6.87 6.82 -10.98 -0.07 6.80 16 8 O -0.55 -9.04 15.60 5.55 0.09 -8.95 16 9 N -0.61 -7.65 2.98 -173.03 -0.52 -8.16 16 10 C 0.10 1.19 6.04 -3.94 -0.02 1.16 16 11 C -0.13 -1.77 5.23 -26.83 -0.14 -1.92 16 12 C -0.09 -1.43 2.19 -90.57 -0.20 -1.63 16 13 C 0.16 3.10 5.65 -4.04 -0.02 3.08 16 14 N -0.73 -18.06 5.32 -59.91 -0.32 -18.38 16 15 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 16 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 17 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 18 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 19 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 C -0.13 -1.64 5.36 -26.60 -0.14 -1.78 16 24 C 0.11 1.41 6.42 -3.71 -0.02 1.39 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.47 6.70 -51.93 -0.35 0.12 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.77 8.04 -51.93 -0.42 0.35 16 32 H 0.06 0.64 7.74 -51.93 -0.40 0.23 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.53 6.85 -51.93 -0.36 0.17 16 35 H 0.08 0.82 5.18 -51.93 -0.27 0.56 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.09 1.45 7.15 -51.93 -0.37 1.07 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.38 9.79 6.84 -40.82 -0.28 9.51 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.09 1.17 7.03 -51.93 -0.37 0.80 16 LS Contribution 363.25 15.07 5.47 5.47 Total: -1.00 -31.49 363.25 -8.79 -40.29 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -8.60 Total: 4.86 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -0.62 Total: -5.32 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.11 Total: -53.60 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.49 -8.79 -40.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204825504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.488 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds