Wall clock time and date at job start Tue Mar 31 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46638 * 2 1 4 4 C 1.53000 * 109.46842 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.47180 * 55.00153 * 4 3 2 6 6 C 1.52993 * 109.47629 * 295.00192 * 4 3 2 7 7 C 1.50700 * 109.47406 * 174.99775 * 4 3 2 8 8 O 1.21287 * 119.99706 * 23.03559 * 7 4 3 9 9 N 1.34780 * 120.00486 * 203.03079 * 7 4 3 10 10 C 1.46921 * 120.62739 * 4.66156 * 9 7 4 11 11 C 1.52758 * 109.00983 * 233.58239 * 10 9 7 12 12 C 1.53040 * 109.38178 * 305.58986 * 11 10 9 13 13 C 1.53002 * 109.44912 * 181.24844 * 12 11 10 14 14 N 1.46500 * 109.46773 * 64.94266 * 13 12 11 15 15 C 1.36936 * 120.00348 * 180.02562 * 14 13 12 16 16 H 1.08008 * 119.99501 * 359.97438 * 15 14 13 17 17 C 1.38806 * 120.00522 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99983 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00188 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47083 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47144 * 120.00252 * 19 17 15 22 22 H 1.48501 * 109.47320 * 240.00378 * 19 17 15 23 23 C 1.53048 * 109.53949 * 61.24083 * 12 11 10 24 24 C 1.46919 * 120.62969 * 184.93815 * 9 7 4 25 25 H 1.09001 * 109.47318 * 60.00331 * 1 2 3 26 26 H 1.09004 * 109.46946 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47471 * 299.99880 * 1 2 3 28 28 H 1.08998 * 109.47081 * 239.99746 * 2 1 3 29 29 H 1.09004 * 109.46888 * 119.99969 * 2 1 3 30 30 H 1.09004 * 109.47455 * 299.99621 * 3 2 1 31 31 H 1.08998 * 109.47592 * 60.00058 * 3 2 1 32 32 H 1.09002 * 109.47787 * 185.75245 * 6 4 3 33 33 H 1.09002 * 109.46803 * 305.75274 * 6 4 3 34 34 H 1.09005 * 109.47365 * 65.74825 * 6 4 3 35 35 H 1.08999 * 109.58619 * 353.42179 * 10 9 7 36 36 H 1.09003 * 109.58571 * 113.84055 * 10 9 7 37 37 H 1.09000 * 109.56658 * 185.55519 * 11 10 9 38 38 H 1.09001 * 109.35650 * 65.49784 * 11 10 9 39 39 H 1.08995 * 109.46381 * 301.21858 * 12 11 10 40 40 H 1.08999 * 109.47187 * 184.93817 * 13 12 11 41 41 H 1.08997 * 109.47046 * 304.94395 * 13 12 11 42 42 H 0.97005 * 120.00273 * 359.97438 * 14 13 12 43 43 H 0.96997 * 120.00232 * 180.02562 * 18 17 15 44 44 H 1.08991 * 109.49925 * 178.68129 * 23 12 11 45 45 H 1.08997 * 109.52525 * 58.59906 * 23 12 11 46 46 H 1.08997 * 109.59048 * 246.15863 * 24 9 7 47 47 H 1.09005 * 109.58940 * 6.44290 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9336 0.8530 -0.8410 6 6 4.0795 0.8332 1.3082 7 6 4.0723 2.8579 -0.1232 8 8 3.3629 3.7844 0.2078 9 7 5.3099 3.0944 -0.6018 10 6 6.1424 1.9918 -1.1017 11 6 7.4921 2.0239 -0.3872 12 6 8.1202 3.4100 -0.5500 13 6 9.4862 3.4344 0.1386 14 7 10.3952 2.5125 -0.5470 15 6 11.6828 2.3651 -0.1049 16 1 12.0283 2.9289 0.7491 17 6 12.5439 1.4912 -0.7541 18 7 12.1229 0.8045 -1.7952 19 14 14.3006 1.2907 -0.1514 20 1 14.5232 2.1682 1.0258 21 1 14.5327 -0.1241 0.2355 22 1 15.2422 1.6682 -1.2358 23 6 7.2095 4.4625 0.0866 24 6 5.8543 4.4587 -0.6279 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 5.1646 0.9258 1.3537 33 1 3.6341 1.3598 2.1523 34 1 3.8027 -0.2203 1.3502 35 1 5.6476 1.0412 -0.9028 36 1 6.2971 2.1081 -2.1745 37 1 8.1523 1.2723 -0.8201 38 1 7.3452 1.8132 0.6721 39 1 8.2440 3.6304 -1.6102 40 1 9.8950 4.4441 0.0992 41 1 9.3743 3.1280 1.1786 42 1 10.0847 2.0059 -1.3138 43 1 12.7245 0.1936 -2.2487 44 1 7.6685 5.4465 -0.0091 45 1 7.0653 4.2294 1.1415 46 1 5.9851 4.7804 -1.6611 47 1 5.1685 5.1357 -0.1185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204825504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:14 Heat of formation + Delta-G solvation = -74.687465 kcal Electronic energy + Delta-G solvation = -22904.314254 eV Core-core repulsion = 19699.241447 eV Total energy + Delta-G solvation = -3205.072807 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.47326 -39.10296 -36.94747 -36.54018 -34.51132 -33.16566 -32.08414 -31.81168 -28.29686 -27.56501 -25.91431 -24.68096 -24.24826 -23.00552 -21.88132 -21.12093 -19.66055 -19.13130 -18.22281 -16.95695 -16.69239 -16.46540 -16.10932 -15.67263 -15.47562 -15.31668 -15.07011 -14.85516 -14.62493 -14.13664 -13.94553 -13.93903 -13.49245 -13.34546 -13.17717 -13.09636 -12.90245 -12.79565 -12.76827 -12.22320 -12.15107 -12.09872 -11.95962 -11.84078 -11.73463 -11.67155 -11.49603 -11.34493 -11.31846 -10.92609 -10.59296 -9.65805 -8.97280 -7.94445 -5.22133 1.48152 1.48392 1.58347 1.59511 2.01340 2.56596 3.39209 3.44966 3.74956 3.78896 3.79043 3.91882 3.98023 4.11500 4.25143 4.27848 4.34030 4.38088 4.39505 4.48530 4.58990 4.64307 4.73135 4.77176 4.82417 4.84689 4.90318 4.91245 4.97404 5.01868 5.04581 5.07134 5.13408 5.17713 5.22137 5.29992 5.32782 5.43497 5.48670 5.51283 5.54721 5.60298 6.28783 6.41301 7.15137 7.35573 8.11484 8.36029 9.29052 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026781 B = 0.003173 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.275290 B = 8822.863716 C = 9486.424246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.096 4.096 4 C -0.108 4.108 5 H 0.113 0.887 6 C -0.140 4.140 7 C 0.514 3.486 8 O -0.587 6.587 9 N -0.608 5.608 10 C 0.109 3.891 11 C -0.119 4.119 12 C -0.084 4.084 13 C 0.157 3.843 14 N -0.741 5.741 15 C -0.244 4.244 16 H 0.071 0.929 17 C -0.073 4.073 18 N -0.966 5.966 19 Si 0.970 3.030 20 H -0.269 1.269 21 H -0.292 1.292 22 H -0.293 1.293 23 C -0.114 4.114 24 C 0.113 3.887 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.016 0.984 41 H 0.015 0.985 42 H 0.377 0.623 43 H 0.251 0.749 44 H 0.085 0.915 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.733 -0.584 2.491 20.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.134 4.134 4 C -0.129 4.129 5 H 0.131 0.869 6 C -0.197 4.197 7 C 0.304 3.696 8 O -0.467 6.467 9 N -0.340 5.340 10 C -0.013 4.013 11 C -0.157 4.157 12 C -0.103 4.103 13 C 0.031 3.969 14 N -0.385 5.385 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.265 4.265 18 N -0.617 5.617 19 Si 0.799 3.201 20 H -0.194 1.194 21 H -0.219 1.219 22 H -0.220 1.220 23 C -0.153 4.153 24 C -0.009 4.009 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.127 0.873 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.209 0.791 43 H 0.060 0.940 44 H 0.104 0.896 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.956 -0.040 2.784 21.140 hybrid contribution 1.272 -0.106 -0.073 1.279 sum -19.683 -0.146 2.710 19.870 Atomic orbital electron populations 1.21775 0.95579 1.02091 1.01650 1.21576 0.96162 0.95126 1.03043 1.21405 0.92046 0.97943 1.01995 1.21431 0.97797 0.91725 1.01986 0.86900 1.21788 1.01122 1.02225 0.94608 1.21283 0.80660 0.92356 0.75289 1.90638 1.56903 1.47438 1.51743 1.48271 1.15001 1.08975 1.61747 1.21859 0.90512 0.90191 0.98702 1.21738 0.95836 0.97139 1.00977 1.21187 0.93481 0.95683 0.99940 1.20807 0.89402 0.92230 0.94479 1.42551 1.09462 1.50185 1.36267 1.19634 0.89157 1.18814 1.10023 0.91108 1.25498 1.02236 1.00024 0.98775 1.69796 1.36473 1.31581 1.23849 0.85125 0.80297 0.77193 0.77453 1.19388 1.21920 1.22049 1.21803 0.94289 0.99633 0.99587 1.21580 0.94515 0.83448 1.01364 0.93018 0.91727 0.93072 0.91004 0.90832 0.92782 0.92595 0.92411 0.92933 0.88967 0.87348 0.90264 0.91443 0.92114 0.91319 0.96557 0.96748 0.79069 0.93967 0.89629 0.92097 0.90531 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.20 16 2 C -0.12 -1.57 5.69 30.59 0.17 -1.40 16 3 C -0.10 -1.71 4.10 30.59 0.13 -1.59 16 4 C -0.11 -1.97 1.87 -11.54 -0.02 -2.00 16 5 H 0.11 1.62 6.39 -2.38 -0.02 1.60 16 6 C -0.14 -2.32 8.60 71.98 0.62 -1.70 16 7 C 0.51 13.04 6.82 87.66 0.60 13.63 16 8 O -0.59 -19.16 15.60 -3.05 -0.05 -19.21 16 9 N -0.61 -14.39 2.98 -819.74 -2.44 -16.83 16 10 C 0.11 2.32 6.04 86.22 0.52 2.84 16 11 C -0.12 -3.25 5.23 30.53 0.16 -3.09 16 12 C -0.08 -2.50 2.19 -10.76 -0.02 -2.53 16 13 C 0.16 6.12 5.65 86.38 0.49 6.61 16 14 N -0.74 -36.68 5.32 -343.45 -1.83 -38.51 16 15 C -0.24 -13.53 9.99 84.03 0.84 -12.69 16 16 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 17 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 18 N -0.97 -57.78 13.06 21.65 0.28 -57.50 16 19 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 23 C -0.11 -2.85 5.36 30.68 0.16 -2.68 16 24 C 0.11 2.71 6.42 86.37 0.55 3.26 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.85 6.70 -2.39 -0.02 0.83 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.18 8.04 -2.39 -0.02 1.16 16 32 H 0.06 1.04 7.74 -2.39 -0.02 1.02 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.12 6.85 -2.38 -0.02 1.10 16 35 H 0.11 1.80 5.18 -2.39 -0.01 1.79 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 2.18 7.15 -2.39 -0.02 2.16 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.38 19.44 6.84 -92.70 -0.63 18.80 16 43 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 44 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.08 2.10 7.03 -2.38 -0.02 2.08 16 Total: -1.00 -67.04 363.25 3.66 -63.38 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.29 Total: 27.15 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 5.38 Total: -6.18 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -3.98 Total: -112.83 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.05 Total: -19.21 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -67.04 3.66 -63.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204825504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.308 kcal (2) G-P(sol) polarization free energy of solvation -67.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds