Wall clock time and date at job start Tue Mar 31 2020 06:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47196 * 304.99671 * 4 3 2 6 6 C 1.53000 * 109.47341 * 64.99479 * 4 3 2 7 7 C 1.53001 * 109.47328 * 184.99912 * 4 3 2 8 8 C 1.50699 * 109.47335 * 174.99815 * 7 4 3 9 9 O 1.21277 * 119.99910 * 0.02562 * 8 7 4 10 10 N 1.34773 * 119.99651 * 179.97438 * 8 7 4 11 11 C 1.46503 * 119.99730 * 179.97438 * 10 8 7 12 12 H 1.09005 * 110.88735 * 31.12403 * 11 10 8 13 13 C 1.54904 * 111.00818 * 267.19649 * 11 10 8 14 14 N 1.47426 * 104.83781 * 204.91659 * 13 11 10 15 15 C 1.36936 * 125.64886 * 204.08426 * 14 13 11 16 16 H 1.07994 * 119.99732 * 180.02562 * 15 14 13 17 17 C 1.38813 * 120.00193 * 0.05171 * 15 14 13 18 18 N 1.31618 * 119.99860 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00089 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46806 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47034 * 119.99829 * 19 17 15 22 22 H 1.48495 * 109.46965 * 240.00240 * 19 17 15 23 23 C 1.47022 * 108.69881 * 24.12549 * 14 13 11 24 24 C 1.54325 * 107.27339 * 358.94678 * 23 14 13 25 25 H 1.08991 * 110.72343 * 96.16752 * 24 23 14 26 26 C 1.53001 * 110.87075 * 219.37129 * 24 23 14 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 34 34 H 1.09004 * 109.47031 * 179.97438 * 6 4 3 35 35 H 1.08994 * 109.47725 * 300.00215 * 6 4 3 36 36 H 1.09006 * 109.46596 * 60.00412 * 6 4 3 37 37 H 1.09003 * 109.46781 * 295.00031 * 7 4 3 38 38 H 1.09006 * 109.46980 * 54.99682 * 7 4 3 39 39 H 0.97001 * 120.00413 * 0.02562 * 10 8 7 40 40 H 1.09005 * 110.36600 * 323.76132 * 13 11 10 41 41 H 1.09007 * 110.36639 * 86.07430 * 13 11 10 42 42 H 0.97001 * 120.00059 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.88095 * 239.52177 * 23 14 13 44 44 H 1.09003 * 109.87662 * 118.35997 * 23 14 13 45 45 H 1.08999 * 109.47251 * 173.60890 * 26 24 23 46 46 H 1.09000 * 109.47004 * 293.60848 * 26 24 23 47 47 H 1.09007 * 109.46862 * 53.60527 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8533 0.8427 6 6 4.0806 0.8326 -1.3063 7 6 4.0800 2.8796 0.1263 8 6 5.5818 2.8706 0.2505 9 8 6.1849 1.8185 0.2391 10 7 6.2547 4.0319 0.3732 11 6 7.7147 4.0231 0.4946 12 1 8.1446 3.1804 -0.0470 13 6 8.1483 4.0080 1.9816 14 7 9.4979 4.6013 1.9873 15 6 10.4578 4.3916 2.9412 16 1 11.4196 4.8751 2.8547 17 6 10.1949 3.5572 4.0189 18 7 9.0230 2.9671 4.1236 19 14 11.5040 3.2717 5.3203 20 1 12.7239 4.0439 4.9729 21 1 10.9943 3.7186 6.6415 22 1 11.8349 1.8253 5.3807 23 6 9.6421 5.4561 0.7999 24 6 8.3213 5.3654 0.0068 25 1 7.6641 6.1985 0.2555 26 6 8.5913 5.3221 -1.4986 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 5.1706 0.8331 -1.3060 35 1 3.7173 -0.1911 -1.3959 36 1 3.7176 1.4220 -2.1484 37 1 3.7920 3.4461 -0.7593 38 1 3.6449 3.3434 1.0117 39 1 5.7724 4.8734 0.3820 40 1 7.4664 4.6106 2.5817 41 1 8.1820 2.9851 2.3566 42 1 8.8391 2.3842 4.8769 43 1 10.4689 5.1003 0.1852 44 1 9.8212 6.4871 1.1050 45 1 7.6566 5.1444 -2.0304 46 1 9.0164 6.2733 -1.8189 47 1 9.2933 4.5178 -1.7188 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206503087.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:01 Heat of formation + Delta-G solvation = -43.533921 kcal Electronic energy + Delta-G solvation = -22955.008968 eV Core-core repulsion = 19751.287080 eV Total energy + Delta-G solvation = -3203.721888 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.65480 -37.79925 -36.50294 -33.84376 -32.73643 -32.54894 -30.33868 -28.66417 -26.95749 -26.61224 -25.57866 -23.60326 -22.16033 -20.61346 -20.03240 -19.91402 -19.23991 -16.89682 -16.65856 -15.81066 -15.55034 -15.13575 -14.77295 -14.27322 -13.92703 -13.71438 -13.50829 -13.36352 -12.94801 -12.82383 -12.51580 -12.34571 -12.26700 -11.93523 -11.73565 -11.65621 -11.53839 -11.20050 -11.07192 -10.99661 -10.78304 -10.73602 -10.58186 -10.51827 -10.46142 -10.29710 -9.93917 -9.75492 -9.72070 -9.23329 -8.62780 -8.34755 -6.80837 -5.60572 -3.04294 3.09890 3.42538 3.47320 3.50560 3.61118 4.51859 4.68139 4.79911 4.84119 5.07795 5.10905 5.17399 5.28045 5.33730 5.46757 5.48438 5.51452 5.56749 5.63177 5.64070 5.72452 5.78419 5.81297 5.87517 5.92761 5.99429 6.06838 6.09994 6.11708 6.18514 6.22339 6.29705 6.40511 6.46763 6.52256 6.57756 6.68957 6.88126 7.01769 7.50766 7.65493 7.89887 8.02013 8.40974 8.72774 9.24478 9.85757 10.49199 11.42159 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018161 B = 0.003827 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.375796 B = 7315.312482 C = 8495.501269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.076 4.076 5 H 0.080 0.920 6 C -0.153 4.153 7 C -0.136 4.136 8 C 0.510 3.490 9 O -0.534 6.534 10 N -0.717 5.717 11 C 0.119 3.881 12 H 0.091 0.909 13 C 0.149 3.851 14 N -0.604 5.604 15 C -0.225 4.225 16 H 0.079 0.921 17 C -0.011 4.011 18 N -0.917 5.917 19 Si 0.914 3.086 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.141 3.859 24 C -0.112 4.112 25 H 0.072 0.928 26 C -0.136 4.136 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.043 0.957 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.393 0.607 40 H 0.012 0.988 41 H 0.111 0.889 42 H 0.252 0.748 43 H 0.027 0.973 44 H 0.023 0.977 45 H 0.049 0.951 46 H 0.051 0.949 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.600 0.906 -11.388 18.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.152 4.152 4 C -0.095 4.095 5 H 0.098 0.902 6 C -0.210 4.210 7 C -0.177 4.177 8 C 0.296 3.704 9 O -0.410 6.410 10 N -0.367 5.367 11 C 0.014 3.986 12 H 0.109 0.891 13 C 0.023 3.977 14 N -0.330 5.330 15 C -0.353 4.353 16 H 0.097 0.903 17 C -0.207 4.207 18 N -0.566 5.566 19 Si 0.745 3.255 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.217 1.217 23 C 0.015 3.985 24 C -0.131 4.131 25 H 0.090 0.910 26 C -0.194 4.194 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.226 0.774 40 H 0.030 0.970 41 H 0.129 0.871 42 H 0.062 0.938 43 H 0.045 0.955 44 H 0.040 0.960 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.104 0.027 -11.200 18.010 hybrid contribution 0.352 0.487 0.791 0.994 sum -13.753 0.514 -10.408 17.255 Atomic orbital electron populations 1.21782 0.96218 1.01361 1.01586 1.21578 0.95366 0.97142 1.02355 1.21678 0.94979 0.96813 1.01743 1.20893 0.94097 0.94566 0.99966 0.90205 1.21986 1.03353 0.99891 0.95749 1.21750 0.92814 0.99419 1.03681 1.20566 0.89749 0.83940 0.76179 1.90681 1.70245 1.30697 1.49418 1.45924 1.08071 1.08312 1.74366 1.22663 0.78084 0.97048 1.00802 0.89074 1.22221 0.84705 1.02192 0.88608 1.44412 1.12575 1.52410 1.23608 1.19109 0.93430 1.23241 0.99568 0.90317 1.24825 0.97217 0.99811 0.98799 1.69821 1.20938 1.34611 1.31198 0.85998 0.80467 0.77654 0.81372 1.20524 1.21780 1.21693 1.21337 0.93825 0.94444 0.88917 1.22425 0.98359 0.97421 0.94945 0.90959 1.21729 1.01080 1.01457 0.95122 0.92996 0.92952 0.92865 0.91937 0.91737 0.92159 0.92056 0.90529 0.92975 0.93743 0.89491 0.89194 0.77398 0.97031 0.87145 0.93759 0.95524 0.95953 0.93155 0.92961 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.13 -1.14 5.69 -26.73 -0.15 -1.29 16 3 C -0.11 -1.06 4.68 -26.73 -0.13 -1.19 16 4 C -0.08 -0.90 2.04 -90.62 -0.18 -1.09 16 5 H 0.08 1.13 7.96 -51.93 -0.41 0.72 16 6 C -0.15 -1.86 8.69 37.16 0.32 -1.53 16 7 C -0.14 -1.58 5.17 -27.88 -0.14 -1.73 16 8 C 0.51 8.33 7.55 -10.99 -0.08 8.25 16 9 O -0.53 -11.04 13.60 5.56 0.08 -10.96 16 10 N -0.72 -11.36 5.20 -51.73 -0.27 -11.63 16 11 C 0.12 2.34 2.87 -65.78 -0.19 2.15 16 12 H 0.09 2.00 7.45 -51.93 -0.39 1.61 16 13 C 0.15 3.73 5.58 -2.53 -0.01 3.72 16 14 N -0.60 -15.83 3.39 -170.07 -0.58 -16.41 16 15 C -0.23 -6.42 10.27 -15.06 -0.15 -6.57 16 16 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 17 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 18 N -0.92 -27.71 10.09 55.49 0.56 -27.15 16 19 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 23 C 0.14 2.96 6.84 -3.06 -0.02 2.94 16 24 C -0.11 -1.90 3.19 -88.78 -0.28 -2.18 16 25 H 0.07 1.12 8.00 -51.93 -0.42 0.70 16 26 C -0.14 -1.90 9.17 37.16 0.34 -1.56 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.58 6.57 -51.93 -0.34 0.24 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 1.16 5.95 -51.93 -0.31 0.85 16 35 H 0.05 0.58 6.57 -51.93 -0.34 0.24 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.39 4.93 8.57 -40.82 -0.35 4.58 16 40 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.11 3.27 5.87 -51.93 -0.30 2.96 16 42 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.03 0.56 7.78 -51.93 -0.40 0.15 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.83 8.07 -51.93 -0.42 0.41 16 LS Contribution 365.06 15.07 5.50 5.50 Total: -1.00 -32.58 365.06 -8.87 -41.45 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -8.73 Total: 2.94 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -0.41 Total: -1.30 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.29 Total: -55.18 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.58 -8.87 -41.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206503087.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.083 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds