Wall clock time and date at job start Tue Mar 31 2020 06:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46720 * 2 1 4 4 C 1.53006 * 109.46935 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47162 * 55.00119 * 4 3 2 6 6 C 1.53005 * 109.46821 * 294.99950 * 4 3 2 7 7 C 1.53000 * 109.47014 * 175.00198 * 4 3 2 8 8 C 1.50704 * 109.46931 * 184.99849 * 7 4 3 9 9 O 1.21277 * 120.00010 * 359.97438 * 8 7 4 10 10 N 1.34777 * 119.99698 * 179.97438 * 8 7 4 11 11 C 1.46503 * 119.99800 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.64205 * 31.85296 * 11 10 8 13 13 C 1.54322 * 110.72059 * 268.52376 * 11 10 8 14 14 N 1.47022 * 107.27271 * 219.44368 * 13 11 10 15 15 C 1.36940 * 125.64885 * 178.89396 * 14 13 11 16 16 H 1.08000 * 119.99447 * 174.87892 * 15 14 13 17 17 C 1.38805 * 119.99928 * 354.88369 * 15 14 13 18 18 N 1.31613 * 120.00339 * 7.05872 * 17 15 14 19 19 Si 1.86802 * 119.99653 * 187.06713 * 17 15 14 20 20 H 1.48501 * 109.47520 * 94.98432 * 19 17 15 21 21 H 1.48501 * 109.46920 * 214.98541 * 19 17 15 22 22 H 1.48501 * 109.47223 * 334.98395 * 19 17 15 23 23 C 1.47428 * 108.69920 * 358.93806 * 14 13 11 24 24 C 1.54902 * 104.83150 * 24.12756 * 23 14 13 25 25 H 1.09004 * 111.00137 * 81.06801 * 24 23 14 26 26 C 1.53006 * 111.03818 * 204.89781 * 24 23 14 27 27 H 1.09002 * 109.47245 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47441 * 299.99970 * 1 2 3 29 29 H 1.09003 * 109.47564 * 59.99991 * 1 2 3 30 30 H 1.08999 * 109.47004 * 240.00133 * 2 1 3 31 31 H 1.08992 * 109.47109 * 119.99889 * 2 1 3 32 32 H 1.08999 * 109.47273 * 60.00297 * 3 2 1 33 33 H 1.09001 * 109.47770 * 299.99934 * 3 2 1 34 34 H 1.09002 * 109.47068 * 300.00045 * 6 4 3 35 35 H 1.08994 * 109.47257 * 59.99771 * 6 4 3 36 36 H 1.09003 * 109.46880 * 180.02562 * 6 4 3 37 37 H 1.08995 * 109.47445 * 64.99957 * 7 4 3 38 38 H 1.08998 * 109.47145 * 304.99675 * 7 4 3 39 39 H 0.96997 * 120.00309 * 0.02562 * 10 8 7 40 40 H 1.08998 * 109.88119 * 338.85941 * 13 11 10 41 41 H 1.09003 * 109.88801 * 100.02221 * 13 11 10 42 42 H 0.97002 * 120.00203 * 179.97438 * 18 17 15 43 43 H 1.09002 * 110.36388 * 265.29170 * 23 14 13 44 44 H 1.09000 * 110.36480 * 142.97182 * 23 14 13 45 45 H 1.08992 * 109.47287 * 175.39790 * 26 24 23 46 46 H 1.09001 * 109.47181 * 295.40032 * 26 24 23 47 47 H 1.09004 * 109.46699 * 55.39777 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 6 4.0805 0.8327 1.3065 7 6 4.0798 2.8796 -0.1263 8 6 5.5817 2.8707 -0.2504 9 8 6.1849 1.8186 -0.2390 10 7 6.2545 4.0319 -0.3742 11 6 7.7146 4.0233 -0.4943 12 1 8.0524 3.1247 -1.0105 13 6 8.3774 4.1414 0.8944 14 7 9.5430 5.0254 0.7479 15 6 10.3896 5.4035 1.7558 16 1 11.2675 5.9911 1.5315 17 6 10.1193 5.0314 3.0654 18 7 9.1306 4.2018 3.3232 19 14 11.1587 5.7083 4.4621 20 1 10.4944 6.9047 5.0389 21 1 11.3105 4.6710 5.5139 22 1 12.4978 6.0874 3.9439 23 6 9.6489 5.4382 -0.6634 24 6 8.2128 5.2971 -1.2266 25 1 7.6035 6.1621 -0.9642 26 6 8.2353 5.0852 -2.7417 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.7174 1.4221 2.1485 35 1 3.7172 -0.1910 1.3961 36 1 5.1705 0.8332 1.3062 37 1 3.7918 3.4461 0.7592 38 1 3.6448 3.3433 -1.0116 39 1 5.7722 4.8734 -0.3829 40 1 7.6728 4.5719 1.6060 41 1 8.6988 3.1578 1.2368 42 1 8.9419 3.9415 4.2384 43 1 10.3332 4.7813 -1.2004 44 1 9.9833 6.4733 -0.7318 45 1 7.2209 4.9080 -3.0989 46 1 8.6413 5.9729 -3.2267 47 1 8.8597 4.2239 -2.9788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206503088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:05 Heat of formation + Delta-G solvation = -44.666738 kcal Electronic energy + Delta-G solvation = -22976.605084 eV Core-core repulsion = 19772.834074 eV Total energy + Delta-G solvation = -3203.771010 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.67648 -37.79941 -36.49974 -33.83227 -32.73671 -32.52767 -30.36038 -28.66583 -26.92840 -26.58516 -25.58173 -23.61946 -22.15927 -20.65509 -20.08052 -19.79158 -19.30443 -16.87972 -16.63508 -15.89994 -15.50905 -15.00230 -14.84568 -14.28516 -13.97416 -13.63159 -13.53747 -13.41772 -13.02562 -12.75848 -12.65573 -12.28756 -12.15452 -11.85563 -11.72047 -11.60041 -11.51461 -11.31327 -11.01891 -10.94351 -10.77915 -10.71432 -10.58100 -10.54817 -10.44955 -10.32692 -9.96855 -9.90503 -9.66925 -9.23934 -8.58595 -8.37497 -6.81009 -5.68567 -3.02590 3.08124 3.41446 3.46370 3.49098 3.61496 4.51801 4.68237 4.79796 4.84391 5.07277 5.09936 5.14578 5.28505 5.32572 5.44862 5.48958 5.54633 5.57062 5.63667 5.68637 5.72659 5.79488 5.84936 5.89737 5.92680 6.01523 6.02774 6.12128 6.13583 6.18046 6.22154 6.27751 6.38165 6.47433 6.52197 6.65009 6.68308 6.86577 6.99708 7.58055 7.64375 7.87155 8.00451 8.27757 8.70686 9.23402 9.84337 10.49984 11.42336 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018635 B = 0.003845 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.185775 B = 7281.075931 C = 8493.524620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.074 4.074 5 H 0.076 0.924 6 C -0.155 4.155 7 C -0.137 4.137 8 C 0.511 3.489 9 O -0.538 6.538 10 N -0.715 5.715 11 C 0.120 3.880 12 H 0.087 0.913 13 C 0.173 3.827 14 N -0.606 5.606 15 C -0.231 4.231 16 H 0.079 0.921 17 C -0.007 4.007 18 N -0.916 5.916 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.141 3.859 24 C -0.114 4.114 25 H 0.076 0.924 26 C -0.136 4.136 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.395 0.605 40 H 0.051 0.949 41 H 0.044 0.956 42 H 0.252 0.748 43 H 0.021 0.979 44 H 0.042 0.958 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.995 -2.180 -9.812 18.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.093 4.093 5 H 0.094 0.906 6 C -0.212 4.212 7 C -0.177 4.177 8 C 0.297 3.703 9 O -0.415 6.415 10 N -0.365 5.365 11 C 0.015 3.985 12 H 0.105 0.895 13 C 0.047 3.953 14 N -0.333 5.333 15 C -0.359 4.359 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.563 5.563 19 Si 0.740 3.260 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.014 3.986 24 C -0.134 4.134 25 H 0.094 0.906 26 C -0.194 4.194 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.228 0.772 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.039 0.961 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.519 -2.986 -9.563 17.640 hybrid contribution 0.267 0.839 0.883 1.247 sum -14.252 -2.147 -8.680 16.825 Atomic orbital electron populations 1.21782 0.96222 1.01349 1.01605 1.21573 0.95358 0.97151 1.02318 1.21685 0.95026 0.96787 1.01764 1.20877 0.94034 0.94421 0.99936 0.90588 1.22000 1.03680 0.99777 0.95735 1.21758 0.92712 0.99513 1.03761 1.20574 0.89783 0.83913 0.76012 1.90660 1.70377 1.30897 1.49572 1.45976 1.07905 1.08371 1.74284 1.22460 0.78692 0.97869 0.99457 0.89471 1.21475 0.88736 0.95132 0.89964 1.44429 1.30988 1.55130 1.02773 1.19051 1.02964 1.28364 0.85524 0.90343 1.24842 0.98619 0.99632 0.97273 1.69995 1.31831 1.35949 1.18566 0.86127 0.79379 0.78160 0.82284 1.21671 1.21773 1.20628 1.21587 0.92673 0.97727 0.86613 1.22611 0.99070 0.97467 0.94263 0.90555 1.21688 1.01106 1.01412 0.95205 0.93006 0.92857 0.92949 0.92111 0.91609 0.91983 0.92226 0.93445 0.93069 0.90257 0.89102 0.89490 0.77203 0.93072 0.93753 0.93777 0.96137 0.93994 0.93186 0.92837 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.13 -1.12 5.69 -26.73 -0.15 -1.27 16 3 C -0.12 -1.07 4.68 -26.73 -0.13 -1.19 16 4 C -0.07 -0.87 2.04 -90.61 -0.18 -1.06 16 5 H 0.08 0.99 7.95 -51.93 -0.41 0.58 16 6 C -0.15 -2.10 8.69 37.16 0.32 -1.78 16 7 C -0.14 -1.61 5.17 -27.88 -0.14 -1.76 16 8 C 0.51 8.33 7.55 -10.98 -0.08 8.25 16 9 O -0.54 -10.91 13.61 5.56 0.08 -10.84 16 10 N -0.72 -11.44 5.10 -52.03 -0.27 -11.70 16 11 C 0.12 2.32 2.79 -66.10 -0.18 2.13 16 12 H 0.09 1.81 7.44 -51.93 -0.39 1.42 16 13 C 0.17 4.32 5.13 -3.07 -0.02 4.31 16 14 N -0.61 -15.72 3.39 -170.08 -0.58 -16.30 16 15 C -0.23 -6.53 10.27 -15.06 -0.15 -6.68 16 16 H 0.08 2.13 7.84 -52.49 -0.41 1.72 16 17 C -0.01 -0.20 5.48 -17.44 -0.10 -0.30 16 18 N -0.92 -27.58 10.36 55.49 0.57 -27.00 16 19 Si 0.91 22.39 29.56 -169.99 -5.02 17.36 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.14 2.89 6.70 -2.53 -0.02 2.88 16 24 C -0.11 -1.92 3.26 -88.48 -0.29 -2.21 16 25 H 0.08 1.23 8.01 -51.93 -0.42 0.82 16 26 C -0.14 -1.84 9.29 37.16 0.35 -1.50 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.61 6.57 -51.93 -0.34 0.27 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.62 6.57 -51.93 -0.34 0.28 16 36 H 0.08 1.36 5.95 -51.93 -0.31 1.05 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.39 5.15 8.56 -40.82 -0.35 4.80 16 40 H 0.05 1.40 7.18 -51.93 -0.37 1.03 16 41 H 0.04 1.30 7.61 -51.93 -0.40 0.90 16 42 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.02 0.43 8.03 -51.93 -0.42 0.01 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 LS Contribution 365.86 15.07 5.51 5.51 Total: -1.00 -32.44 365.86 -8.89 -41.34 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -8.78 Total: 2.59 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -0.41 Total: -0.97 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.27 Total: -55.00 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.84 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.44 -8.89 -41.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206503088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.327 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds