Wall clock time and date at job start Tue Mar 31 2020 05:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53002 * 109.47628 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47066 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47701 * 55.00137 * 5 4 3 7 7 C 1.52997 * 109.47392 * 294.99910 * 5 4 3 8 8 C 1.50700 * 109.46987 * 174.99845 * 5 4 3 9 9 O 1.21281 * 120.00075 * 0.02562 * 8 5 4 10 10 N 1.34775 * 120.00291 * 179.97438 * 8 5 4 11 11 C 1.46503 * 120.00100 * 180.02562 * 10 8 5 12 12 H 1.09000 * 110.64214 * 34.30284 * 11 10 8 13 13 C 1.54322 * 110.72034 * 271.15527 * 11 10 8 14 14 N 1.47021 * 107.27163 * 219.44620 * 13 11 10 15 15 C 1.36934 * 125.64973 * 178.97675 * 14 13 11 16 16 H 1.07998 * 120.00162 * 179.97438 * 15 14 13 17 17 C 1.38816 * 120.00016 * 359.97438 * 15 14 13 18 18 N 1.31619 * 119.99742 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00131 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47126 * 60.00140 * 19 17 15 21 21 H 1.48502 * 109.47059 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47348 * 299.99735 * 19 17 15 23 23 C 1.47426 * 108.70191 * 358.94000 * 14 13 11 24 24 C 1.55119 * 104.94433 * 24.00551 * 23 14 13 25 25 H 1.09002 * 110.93517 * 81.21531 * 24 23 14 26 26 C 1.53001 * 111.16305 * 205.12878 * 24 23 14 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 34 34 H 1.08996 * 109.46698 * 300.00222 * 4 3 2 35 35 H 1.09002 * 109.46838 * 59.99718 * 4 3 2 36 36 H 1.09007 * 109.47199 * 300.00288 * 7 5 4 37 37 H 1.08995 * 109.47248 * 60.00475 * 7 5 4 38 38 H 1.08998 * 109.47714 * 180.02562 * 7 5 4 39 39 H 0.97000 * 119.99788 * 359.97438 * 10 8 5 40 40 H 1.08996 * 109.88106 * 338.86235 * 13 11 10 41 41 H 1.08992 * 109.88033 * 100.02601 * 13 11 10 42 42 H 0.96998 * 120.00016 * 180.02562 * 18 17 15 43 43 H 1.08998 * 110.36709 * 142.97284 * 23 14 13 44 44 H 1.09007 * 110.36458 * 265.17954 * 23 14 13 45 45 H 1.08996 * 109.47140 * 172.16749 * 26 24 23 46 46 H 1.09001 * 109.47222 * 292.17081 * 26 24 23 47 47 H 1.09010 * 109.46890 * 52.17115 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6457 3.4236 0.8423 7 6 3.6746 3.5698 -1.3067 8 6 5.5819 2.8868 0.1232 9 8 6.1851 1.8376 0.2023 10 7 6.2549 4.0543 0.1446 11 6 7.7151 4.0559 0.2639 12 1 8.1439 3.1976 -0.2534 13 6 8.1418 4.0689 1.7469 14 7 9.3040 4.9624 1.8589 15 6 9.9714 5.2623 3.0163 16 1 10.8177 5.9328 2.9935 17 6 9.5602 4.7045 4.2192 18 7 8.5285 3.8878 4.2471 19 14 10.4711 5.1131 5.7980 20 1 10.4082 6.5767 6.0412 21 1 9.8390 4.3954 6.9341 22 1 11.8898 4.6924 5.6740 23 6 9.6323 5.4812 0.5186 24 6 8.3091 5.3803 -0.2846 25 1 7.6542 6.2232 -0.0640 26 6 8.5812 5.2787 -1.7868 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.9337 0.9286 0.8891 35 1 3.9330 0.9288 -0.8909 36 1 4.1089 3.0313 -2.1491 37 1 2.5883 3.5686 -1.3958 38 1 4.0383 4.5974 -1.3065 39 1 5.7726 4.8934 0.0803 40 1 7.3254 4.4435 2.3642 41 1 8.4162 3.0624 2.0624 42 1 8.2409 3.4983 5.0876 43 1 9.9597 6.5189 0.5832 44 1 10.4048 4.8688 0.0535 45 1 7.6490 5.0700 -2.3116 46 1 8.9971 6.2203 -2.1453 47 1 9.2915 4.4731 -1.9737 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206926757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:21 Heat of formation + Delta-G solvation = -46.333147 kcal Electronic energy + Delta-G solvation = -22980.506988 eV Core-core repulsion = 19776.663717 eV Total energy + Delta-G solvation = -3203.843271 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.73066 -37.70933 -36.20605 -33.89066 -33.38185 -32.44467 -30.34884 -28.87284 -27.54096 -25.63778 -25.21505 -23.72821 -22.29610 -21.00780 -20.20334 -19.87727 -19.14367 -16.90899 -16.58780 -15.87288 -15.78550 -15.01032 -14.69302 -14.31925 -13.80396 -13.78843 -13.43597 -13.27196 -13.12603 -12.76932 -12.72067 -12.57152 -12.28519 -11.96814 -11.73235 -11.67020 -11.38504 -11.31910 -11.02372 -10.99231 -10.95796 -10.74355 -10.70800 -10.53816 -10.49164 -10.37590 -9.94651 -9.90661 -9.67276 -9.25366 -8.58663 -8.38340 -6.80406 -5.66008 -3.01394 3.09173 3.42765 3.46729 3.48667 3.59543 4.52632 4.64733 4.78335 4.83177 5.02863 5.06219 5.08096 5.14902 5.33614 5.35904 5.46663 5.48896 5.55041 5.57595 5.62502 5.68107 5.78297 5.79491 5.85106 5.88656 5.97934 6.01831 6.02201 6.07098 6.13301 6.17720 6.24243 6.32041 6.38836 6.42047 6.53057 6.65364 6.85253 6.99033 7.60323 7.63439 7.88577 8.01022 8.29149 8.70435 9.24817 9.85532 10.50824 11.44429 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017470 B = 0.003933 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.386345 B = 7118.112115 C = 8407.161120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.100 4.100 5 C -0.112 4.112 6 H 0.095 0.905 7 C -0.143 4.143 8 C 0.515 3.485 9 O -0.540 6.540 10 N -0.713 5.713 11 C 0.120 3.880 12 H 0.086 0.914 13 C 0.174 3.826 14 N -0.606 5.606 15 C -0.231 4.231 16 H 0.078 0.922 17 C -0.008 4.008 18 N -0.919 5.919 19 Si 0.912 3.088 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.141 3.859 24 C -0.114 4.114 25 H 0.076 0.924 26 C -0.136 4.136 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.394 0.606 40 H 0.049 0.951 41 H 0.047 0.953 42 H 0.253 0.747 43 H 0.041 0.959 44 H 0.021 0.979 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.573 -0.579 -12.650 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.138 4.138 5 C -0.133 4.133 6 H 0.113 0.887 7 C -0.200 4.200 8 C 0.301 3.699 9 O -0.417 6.417 10 N -0.363 5.363 11 C 0.015 3.985 12 H 0.104 0.896 13 C 0.048 3.952 14 N -0.333 5.333 15 C -0.359 4.359 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.566 5.566 19 Si 0.743 3.257 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.014 3.986 24 C -0.134 4.134 25 H 0.094 0.906 26 C -0.194 4.194 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.228 0.772 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.039 0.961 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.136 -1.410 -12.348 18.084 hybrid contribution 0.243 0.646 0.974 1.193 sum -12.893 -0.764 -11.375 17.210 Atomic orbital electron populations 1.21779 0.96138 1.01387 1.01641 1.21529 0.95495 0.97124 1.02214 1.21690 0.95433 0.96720 1.01963 1.21396 0.94365 0.94437 1.03603 1.21324 0.92664 0.99129 1.00185 0.88684 1.21807 1.01886 1.00200 0.96132 1.20527 0.89554 0.83896 0.75957 1.90694 1.70200 1.31437 1.49334 1.45945 1.07912 1.08133 1.74328 1.22467 0.78517 0.97449 1.00034 0.89639 1.21465 0.90146 0.95211 0.88364 1.44407 1.33984 1.52995 1.01906 1.19000 1.09542 1.23476 0.83923 0.90413 1.24833 0.98361 0.99480 0.97769 1.69971 1.27139 1.34288 1.25178 0.86198 0.78959 0.77594 0.82977 1.21217 1.21613 1.21158 1.21615 0.93176 0.97241 0.86536 1.22640 0.99081 0.97149 0.94518 0.90560 1.21687 1.01081 1.01449 0.95194 0.92803 0.92978 0.92926 0.91901 0.92075 0.91895 0.92010 0.90939 0.91464 0.92234 0.91532 0.92291 0.77222 0.93237 0.93530 0.93710 0.94063 0.96130 0.93137 0.92841 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.80 16 2 C -0.13 -1.13 5.93 -26.73 -0.16 -1.29 16 3 C -0.12 -1.13 4.97 -26.73 -0.13 -1.26 16 4 C -0.10 -1.21 4.03 -26.73 -0.11 -1.32 16 5 C -0.11 -1.36 2.72 -91.78 -0.25 -1.61 16 6 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 7 C -0.14 -1.33 8.84 37.16 0.33 -1.00 16 8 C 0.51 8.70 7.15 -10.99 -0.08 8.62 16 9 O -0.54 -11.52 15.60 5.56 0.09 -11.44 16 10 N -0.71 -11.61 5.01 -52.03 -0.26 -11.87 16 11 C 0.12 2.35 2.74 -66.09 -0.18 2.17 16 12 H 0.09 1.79 7.52 -51.93 -0.39 1.40 16 13 C 0.17 4.41 5.13 -3.07 -0.02 4.39 16 14 N -0.61 -15.82 3.40 -169.94 -0.58 -16.40 16 15 C -0.23 -6.57 10.28 -15.06 -0.15 -6.72 16 16 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 17 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 18 N -0.92 -27.88 10.31 55.49 0.57 -27.30 16 19 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 C 0.14 2.92 6.72 -2.41 -0.02 2.90 16 24 C -0.11 -1.93 3.27 -88.35 -0.29 -2.21 16 25 H 0.08 1.23 8.00 -51.93 -0.42 0.82 16 26 C -0.14 -1.84 9.32 37.16 0.35 -1.49 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.52 6.57 -51.93 -0.34 0.18 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 1.03 7.95 -51.93 -0.41 0.62 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.51 6.57 -51.93 -0.34 0.17 16 38 H 0.06 0.50 7.56 -51.93 -0.39 0.10 16 39 H 0.39 5.25 7.95 -40.82 -0.32 4.93 16 40 H 0.05 1.38 7.27 -51.93 -0.38 1.00 16 41 H 0.05 1.38 7.51 -51.93 -0.39 0.99 16 42 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.02 0.43 7.99 -51.93 -0.41 0.02 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.77 8.08 -51.92 -0.42 0.35 16 LS Contribution 368.50 15.07 5.55 5.55 Total: -1.00 -33.07 368.50 -8.92 -41.99 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -8.84 Total: 1.91 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -0.44 Total: 0.05 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.27 Total: -55.57 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.07 -8.92 -41.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206926757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.343 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds